Guide to the Human Genome
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Name: GRWD1 Sequence: fasta or formatted (446aa) NCBI GI: 237820620
Description:

glutamate-rich WD repeat containing 1

Referenced in:

RB1 and Related Functions
Ribosomes
WD Repeat Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         38           2
 C cysteine            1.6          7           1
 D aspartate           6.3         28           2
 E glutamate           9.6         43           6
 F phenylalanine       3.4         15           1
 G glycine             8.3         37           2
 H histidine           3.6         16           1
 I isoleucine          2.7         12           1
 K lysine              2.5         11           1
 L leucine             9.2         41           2
 M methionine          2.2         10           2
 N asparagine          1.6          7           1
 P proline             6.5         29           3
 Q glutamine           4.9         22           2
 R arginine            6.3         28           3
 S serine              6.7         30           2
 T threonine           5.6         25           2
 V valine              6.7         30           2
 W tryptophan          2.7         12           1
 Y tyrosine            1.1          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   glutamate-rich WD repeat containing 1 
RBBP4                 0.110   retinoblastoma binding protein 4 isoform c 
RBBP4                 0.110   retinoblastoma binding protein 4 isoform b 
RBBP4                 0.110   retinoblastoma binding protein 4 isoform a 
RBBP7                 0.109   retinoblastoma binding protein 7 
PEX7                  0.060   peroxisomal biogenesis factor 7 
WDR17                 0.057   WD repeat domain 17 isoform 2 
WDR17                 0.057   WD repeat domain 17 isoform 1 
WDR59                 0.054   WD repeat domain 59 
WDR33                 0.051   WD repeat domain 33 isoform 1 
PRPF19                0.048   PRP19/PSO4 pre-mRNA processing factor 19 homolog [Hom...
WDR5                  0.047   WD repeat domain 5 
WDR5                  0.047   WD repeat domain 5 
NLE1                  0.047   Notchless gene homolog isoform b 
NLE1                  0.047   Notchless gene homolog isoform a 
KATNB1                0.047   katanin p80 subunit B 1 
WDR24                 0.046   WD repeat domain 24 
TAF5L                 0.046   PCAF associated factor 65 beta isoform a 
WDR51A                0.045   WD repeat domain 51A isoform 3 
WDR51A                0.045   WD repeat domain 51A isoform 2 
WDR51A                0.045   WD repeat domain 51A isoform 1 
CIAO1                 0.045   WD repeat domain 39 
TBL1X                 0.043   transducin beta-like 1X isoform b 
TBL1X                 0.043   transducin beta-like 1X isoform b 
TBL1X                 0.043   transducin beta-like 1X isoform a 
TBL1X                 0.043   transducin beta-like 1X isoform a 
COPB2                 0.043   coatomer protein complex, subunit beta 2 (beta prime)...
WDR12                 0.042   WD repeat domain 12 protein 
TAF5                  0.042   TBP-associated factor 5 
TBL1XR1               0.042   transducin (beta)-like 1 X-linked receptor 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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