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Search of human proteins with 89213247
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|89213247 intermediate filament family orphan isoform 3 [Homo
sapiens]
(200 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|89213250 intermediate filament family orphan isoform 4 [Homo ... 402 e-112
gi|89213247 intermediate filament family orphan isoform 3 [Homo ... 402 e-112
gi|18490978 intermediate filament family orphan isoform 2 [Homo ... 395 e-111
gi|210147457 intermediate filament family orphan 2 [Homo sapiens] 210 6e-55
gi|14249342 internexin neuronal intermediate filament protein, a... 57 1e-08
gi|62414289 vimentin [Homo sapiens] 57 1e-08
gi|169168829 PREDICTED: similar to hCG1643231 [Homo sapiens] 54 7e-08
gi|169169468 PREDICTED: similar to hCG1643231 [Homo sapiens] 54 7e-08
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ... 54 9e-08
gi|55749932 desmin [Homo sapiens] 54 1e-07
gi|105990539 neurofilament, light polypeptide 68kDa [Homo sapiens] 52 4e-07
gi|4504919 keratin 8 [Homo sapiens] 50 1e-06
gi|196115290 glial fibrillary acidic protein isoform 2 [Homo sap... 50 1e-06
gi|4503979 glial fibrillary acidic protein isoform 1 [Homo sapiens] 50 1e-06
gi|89357932 keratin 5b [Homo sapiens] 50 1e-06
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens] 50 2e-06
gi|148612803 keratin 6 irs4 [Homo sapiens] 49 2e-06
gi|15618995 keratin 71 [Homo sapiens] 49 3e-06
gi|27436951 lamin B2 [Homo sapiens] 49 3e-06
gi|21264345 peripherin [Homo sapiens] 49 4e-06
gi|226246665 keratin 72 isoform 2 [Homo sapiens] 48 6e-06
gi|125628636 keratin 80 isoform a [Homo sapiens] 47 8e-06
gi|28173564 keratin 73 [Homo sapiens] 47 8e-06
gi|125628632 keratin 80 isoform b [Homo sapiens] 47 8e-06
gi|153791158 keratin 75 [Homo sapiens] 45 3e-05
gi|28372503 keratin 72 isoform 1 [Homo sapiens] 45 4e-05
gi|67782365 keratin 7 [Homo sapiens] 45 4e-05
gi|32567786 keratin 6L [Homo sapiens] 45 4e-05
gi|226246663 keratin 72 isoform 1 [Homo sapiens] 45 4e-05
gi|148277620 type I hair keratin KA35 [Homo sapiens] 45 5e-05
>gi|89213250 intermediate filament family orphan isoform 4 [Homo
sapiens]
Length = 563
Score = 402 bits (1033), Expect = e-112
Identities = 200/200 (100%), Positives = 200/200 (100%)
Query: 1 MGGRKRERKAAVEEDTSLSESEGPRQPDGDEEESTALSINEEMQRMLNQLREYDFEDDCD 60
MGGRKRERKAAVEEDTSLSESEGPRQPDGDEEESTALSINEEMQRMLNQLREYDFEDDCD
Sbjct: 364 MGGRKRERKAAVEEDTSLSESEGPRQPDGDEEESTALSINEEMQRMLNQLREYDFEDDCD 423
Query: 61 SLTWEETEETLLLWEDFSGYAMAAAEAQGEQQEDSLEKVIKDTESLFKTREKEYQETIDQ 120
SLTWEETEETLLLWEDFSGYAMAAAEAQGEQQEDSLEKVIKDTESLFKTREKEYQETIDQ
Sbjct: 424 SLTWEETEETLLLWEDFSGYAMAAAEAQGEQQEDSLEKVIKDTESLFKTREKEYQETIDQ 483
Query: 121 IELELATAKNDMNRHLHEYMEMCSMKRGLDVQMETCRRLITQSGDRKSPAFTAVPLSDPP 180
IELELATAKNDMNRHLHEYMEMCSMKRGLDVQMETCRRLITQSGDRKSPAFTAVPLSDPP
Sbjct: 484 IELELATAKNDMNRHLHEYMEMCSMKRGLDVQMETCRRLITQSGDRKSPAFTAVPLSDPP 543
Query: 181 PPPSEAEDSDRDVSSDSSMR 200
PPPSEAEDSDRDVSSDSSMR
Sbjct: 544 PPPSEAEDSDRDVSSDSSMR 563
>gi|89213247 intermediate filament family orphan isoform 3 [Homo
sapiens]
Length = 200
Score = 402 bits (1033), Expect = e-112
Identities = 200/200 (100%), Positives = 200/200 (100%)
Query: 1 MGGRKRERKAAVEEDTSLSESEGPRQPDGDEEESTALSINEEMQRMLNQLREYDFEDDCD 60
MGGRKRERKAAVEEDTSLSESEGPRQPDGDEEESTALSINEEMQRMLNQLREYDFEDDCD
Sbjct: 1 MGGRKRERKAAVEEDTSLSESEGPRQPDGDEEESTALSINEEMQRMLNQLREYDFEDDCD 60
Query: 61 SLTWEETEETLLLWEDFSGYAMAAAEAQGEQQEDSLEKVIKDTESLFKTREKEYQETIDQ 120
SLTWEETEETLLLWEDFSGYAMAAAEAQGEQQEDSLEKVIKDTESLFKTREKEYQETIDQ
Sbjct: 61 SLTWEETEETLLLWEDFSGYAMAAAEAQGEQQEDSLEKVIKDTESLFKTREKEYQETIDQ 120
Query: 121 IELELATAKNDMNRHLHEYMEMCSMKRGLDVQMETCRRLITQSGDRKSPAFTAVPLSDPP 180
IELELATAKNDMNRHLHEYMEMCSMKRGLDVQMETCRRLITQSGDRKSPAFTAVPLSDPP
Sbjct: 121 IELELATAKNDMNRHLHEYMEMCSMKRGLDVQMETCRRLITQSGDRKSPAFTAVPLSDPP 180
Query: 181 PPPSEAEDSDRDVSSDSSMR 200
PPPSEAEDSDRDVSSDSSMR
Sbjct: 181 PPPSEAEDSDRDVSSDSSMR 200
>gi|18490978 intermediate filament family orphan isoform 2 [Homo
sapiens]
Length = 559
Score = 395 bits (1016), Expect = e-111
Identities = 199/200 (99%), Positives = 199/200 (99%), Gaps = 1/200 (0%)
Query: 1 MGGRKRERKAAVEEDTSLSESEGPRQPDGDEEESTALSINEEMQRMLNQLREYDFEDDCD 60
MGGRKRERKAAVEEDTSLSESEGPRQPDGDEEESTALSINEEMQRMLNQLREYDFEDDCD
Sbjct: 361 MGGRKRERKAAVEEDTSLSESEGPRQPDGDEEESTALSINEEMQRMLNQLREYDFEDDCD 420
Query: 61 SLTWEETEETLLLWEDFSGYAMAAAEAQGEQQEDSLEKVIKDTESLFKTREKEYQETIDQ 120
SLTWEETEETLLLWEDFSGYAMAAAEAQGEQ EDSLEKVIKDTESLFKTREKEYQETIDQ
Sbjct: 421 SLTWEETEETLLLWEDFSGYAMAAAEAQGEQ-EDSLEKVIKDTESLFKTREKEYQETIDQ 479
Query: 121 IELELATAKNDMNRHLHEYMEMCSMKRGLDVQMETCRRLITQSGDRKSPAFTAVPLSDPP 180
IELELATAKNDMNRHLHEYMEMCSMKRGLDVQMETCRRLITQSGDRKSPAFTAVPLSDPP
Sbjct: 480 IELELATAKNDMNRHLHEYMEMCSMKRGLDVQMETCRRLITQSGDRKSPAFTAVPLSDPP 539
Query: 181 PPPSEAEDSDRDVSSDSSMR 200
PPPSEAEDSDRDVSSDSSMR
Sbjct: 540 PPPSEAEDSDRDVSSDSSMR 559
>gi|210147457 intermediate filament family orphan 2 [Homo sapiens]
Length = 517
Score = 210 bits (535), Expect = 6e-55
Identities = 112/190 (58%), Positives = 141/190 (74%), Gaps = 6/190 (3%)
Query: 4 RKRERKAAVEEDTSLSESEGPRQPDGDEEESTALSINEEMQRMLNQLRE-YDFEDDCDSL 62
+K+ERK A ++D S + E R D +E +++I +EM+RM NQLRE +DF+DDCDSL
Sbjct: 325 KKKERKVASDDDISEQDGEVNRFSD---DEVGSMNITDEMKRMFNQLRETFDFDDDCDSL 381
Query: 63 TWEETEETLLLWEDFSGYAMAAAEAQGEQQEDSLEKVIKDTESLFKTREKEYQETIDQIE 122
TWEE E+TLLLWEDF+ + QGEQ+E+ L +I +TES FKTR+KEYQETI QIE
Sbjct: 382 TWEENEDTLLLWEDFTN-CNPTIDLQGEQEEN-LGNLIHETESFFKTRDKEYQETIGQIE 439
Query: 123 LELATAKNDMNRHLHEYMEMCSMKRGLDVQMETCRRLITQSGDRKSPAFTAVPLSDPPPP 182
LELATAK+DMNRHLHEYMEMCSMKRGLDVQMETCRRLI S DR SP+ ++V SD
Sbjct: 440 LELATAKSDMNRHLHEYMEMCSMKRGLDVQMETCRRLIKGSADRNSPSPSSVASSDSGST 499
Query: 183 PSEAEDSDRD 192
++ +R+
Sbjct: 500 DEIQDEFERE 509
>gi|14249342 internexin neuronal intermediate filament protein,
alpha [Homo sapiens]
Length = 499
Score = 57.0 bits (136), Expect = 1e-08
Identities = 29/91 (31%), Positives = 51/91 (56%)
Query: 94 DSLEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEMCSMKRGLDVQM 153
+SLE+ I + E YQ++I Q+E +L K++M RHL EY ++ ++K LD+++
Sbjct: 334 ESLERQILELEERHSAEVAGYQDSIGQLENDLRNTKSEMARHLREYQDLLNVKMALDIEI 393
Query: 154 ETCRRLITQSGDRKSPAFTAVPLSDPPPPPS 184
R+L+ R S + ++ +P P PS
Sbjct: 394 AAYRKLLEGEETRFSTSGLSISGLNPLPNPS 424
>gi|62414289 vimentin [Homo sapiens]
Length = 466
Score = 56.6 bits (135), Expect = 1e-08
Identities = 28/88 (31%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 94 DSLEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEMCSMKRGLDVQM 153
+SLE+ +++ E F YQ+TI +++ E+ K +M RHL EY ++ ++K LD+++
Sbjct: 338 ESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEI 397
Query: 154 ETCRRLITQSGDRKS---PAFTAVPLSD 178
T R+L+ R S P F+++ L +
Sbjct: 398 ATYRKLLEGEESRISLPLPNFSSLNLRE 425
>gi|169168829 PREDICTED: similar to hCG1643231 [Homo sapiens]
Length = 313
Score = 54.3 bits (129), Expect = 7e-08
Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 6/138 (4%)
Query: 26 QPDGDEEESTALSINEEMQRMLNQLREYD--FEDDCDSLTWEETEETLLLWEDFSGYAMA 83
QPD +E L + E+ M + ++ ++D+ + T E E +L+ +D +
Sbjct: 91 QPDTLVQEK--LKLKAELGNMQGLVEDFKNKYKDEINKCT-EMENEFILIRKDMDDAYVN 147
Query: 84 AAEAQG-EQQEDSLEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEM 142
AE +G + Q SLE I D + + K+ + ++E L A DM LHEY ++
Sbjct: 148 KAETEGLKSQRASLEATIADVKQRGELAIKDANTKLSKLEAALQQAMQDMAWQLHEYQKL 207
Query: 143 CSMKRGLDVQMETCRRLI 160
+MK LD+++ T R+L+
Sbjct: 208 KNMKLALDIEIATYRKLL 225
>gi|169169468 PREDICTED: similar to hCG1643231 [Homo sapiens]
Length = 315
Score = 54.3 bits (129), Expect = 7e-08
Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 6/138 (4%)
Query: 26 QPDGDEEESTALSINEEMQRMLNQLREYD--FEDDCDSLTWEETEETLLLWEDFSGYAMA 83
QPD +E L + E+ M + ++ ++D+ + T E E +L+ +D +
Sbjct: 93 QPDTLVQEK--LKLEAELGNMQGLVEDFKNKYKDEINKCT-EMENEFILIRKDMDDAYVN 149
Query: 84 AAEAQG-EQQEDSLEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEM 142
AE +G + Q SLE I D + + K+ + ++E L A DM LHEY ++
Sbjct: 150 KAETEGLKSQRASLEATIADVKQRGELAIKDANTKLSKLEAALQQAMQDMAWQLHEYQKL 209
Query: 143 CSMKRGLDVQMETCRRLI 160
+MK LD+++ T R+L+
Sbjct: 210 KNMKLALDIEIATYRKLL 227
>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1
[Homo sapiens]
Length = 916
Score = 53.9 bits (128), Expect = 9e-08
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 93 EDSLEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEMCSMKRGLDVQ 152
++SLE+ + D E YQ+TI Q+E EL K +M RHL EY ++ ++K LD++
Sbjct: 338 KESLERQLSDIEERHNHDLSSYQDTIQQLENELRGTKWEMARHLREYQDLLNVKMALDIE 397
Query: 153 METCRRLI--------TQSGDRKSPAFTAVP 175
+ R+L+ T +G P +T P
Sbjct: 398 IAAYRKLLEGEETRFSTFAGSITGPLYTHRP 428
>gi|55749932 desmin [Homo sapiens]
Length = 470
Score = 53.5 bits (127), Expect = 1e-07
Identities = 24/67 (35%), Positives = 43/67 (64%)
Query: 94 DSLEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEMCSMKRGLDVQM 153
DSL + +++ E F + YQ+ I ++E E+ K++M RHL EY ++ ++K LDV++
Sbjct: 343 DSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMARHLREYQDLLNVKMALDVEI 402
Query: 154 ETCRRLI 160
T R+L+
Sbjct: 403 ATYRKLL 409
>gi|105990539 neurofilament, light polypeptide 68kDa [Homo sapiens]
Length = 543
Score = 51.6 bits (122), Expect = 4e-07
Identities = 26/81 (32%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 94 DSLEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEMCSMKRGLDVQM 153
++LEK +++ E Q+TI+++E EL T K++M R+L EY ++ ++K LD+++
Sbjct: 327 EALEKQLQELEDKQNADISAMQDTINKLENELRTTKSEMARYLKEYQDLLNVKMALDIEI 386
Query: 154 ETCRRLITQSGDRKSPAFTAV 174
R+L+ G+ +FT+V
Sbjct: 387 AAYRKLL--EGEETRLSFTSV 405
>gi|4504919 keratin 8 [Homo sapiens]
Length = 483
Score = 50.1 bits (118), Expect = 1e-06
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 85 AEAQG-EQQEDSLEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEMC 143
AE +G + Q SLE I D E + K+ + ++E L AK DM R L EY E+
Sbjct: 319 AEIEGLKGQRASLEAAIADAEQRGELAIKDANAKLSELEAALQRAKQDMARQLREYQELM 378
Query: 144 SMKRGLDVQMETCRRLI 160
++K LD+++ T R+L+
Sbjct: 379 NVKLALDIEIATYRKLL 395
>gi|196115290 glial fibrillary acidic protein isoform 2 [Homo
sapiens]
Length = 431
Score = 50.1 bits (118), Expect = 1e-06
Identities = 23/73 (31%), Positives = 44/73 (60%)
Query: 94 DSLEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEMCSMKRGLDVQM 153
+SLE+ +++ E YQE + ++E E + K++M RHL EY ++ ++K LD+++
Sbjct: 304 ESLERQMREQEERHVREAASYQEALARLEEEGQSLKDEMARHLQEYQDLLNVKLALDIEI 363
Query: 154 ETCRRLITQSGDR 166
T R+L+ +R
Sbjct: 364 ATYRKLLEGEENR 376
>gi|4503979 glial fibrillary acidic protein isoform 1 [Homo sapiens]
Length = 432
Score = 50.1 bits (118), Expect = 1e-06
Identities = 23/73 (31%), Positives = 44/73 (60%)
Query: 94 DSLEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEMCSMKRGLDVQM 153
+SLE+ +++ E YQE + ++E E + K++M RHL EY ++ ++K LD+++
Sbjct: 304 ESLERQMREQEERHVREAASYQEALARLEEEGQSLKDEMARHLQEYQDLLNVKLALDIEI 363
Query: 154 ETCRRLITQSGDR 166
T R+L+ +R
Sbjct: 364 ATYRKLLEGEENR 376
>gi|89357932 keratin 5b [Homo sapiens]
Length = 520
Score = 50.1 bits (118), Expect = 1e-06
Identities = 30/84 (35%), Positives = 45/84 (53%)
Query: 90 EQQEDSLEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEMCSMKRGL 149
++Q SL+ I D E + K+ Q +D++E L AK ++ R L EY E+ S K L
Sbjct: 347 KKQNASLQAAITDAEQRGELALKDAQAKVDELEAALRMAKQNLARLLCEYQELTSTKLSL 406
Query: 150 DVQMETCRRLITQSGDRKSPAFTA 173
DV++ T RRL+ R S T+
Sbjct: 407 DVEIATYRRLLEGEECRMSGECTS 430
>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
Length = 1020
Score = 49.7 bits (117), Expect = 2e-06
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 93 EDSLEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEMCSMKRGLDVQ 152
+DSLE+ + E + YQE I Q++ EL K +M L EY ++ ++K LD++
Sbjct: 339 KDSLERQRSELEDRHQADIASYQEAIQQLDAELRNTKWEMAAQLREYQDLLNVKMALDIE 398
Query: 153 METCRRLITQSGDRKSPAFTAVPLSDPPPPP 183
+ R+L+ G+ F +P S P P
Sbjct: 399 IAAYRKLL--EGEECRIGFGPIPFSLPEGLP 427
>gi|148612803 keratin 6 irs4 [Homo sapiens]
Length = 529
Score = 49.3 bits (116), Expect = 2e-06
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 90 EQQEDSLEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEMCSMKRGL 149
++Q SLE I D E K+ Q +D++E L AK ++ R L EY E+ S+K L
Sbjct: 376 KKQRASLETAIADAEQRGDNALKDAQAKLDELEGALHQAKEELARMLREYQELMSLKLAL 435
Query: 150 DVQMETCRRLI 160
D+++ T R+L+
Sbjct: 436 DMEIATYRKLL 446
>gi|15618995 keratin 71 [Homo sapiens]
Length = 523
Score = 48.9 bits (115), Expect = 3e-06
Identities = 27/82 (32%), Positives = 44/82 (53%)
Query: 90 EQQEDSLEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEMCSMKRGL 149
++Q +LE I D E K+ + +D++E L AK ++ R L EY E+ S+K L
Sbjct: 366 KKQASNLETAIADAEQRGDNALKDARAKLDELEGALHQAKEELARMLREYQELMSLKLAL 425
Query: 150 DVQMETCRRLITQSGDRKSPAF 171
D+++ T R+L+ R S F
Sbjct: 426 DMEIATYRKLLESEECRMSGEF 447
>gi|27436951 lamin B2 [Homo sapiens]
Length = 600
Score = 48.9 bits (115), Expect = 3e-06
Identities = 47/206 (22%), Positives = 82/206 (39%), Gaps = 24/206 (11%)
Query: 4 RKRERKAAVEEDTSLSES---------EGPRQPDGDEEESTALSINEEMQRMLNQLR-EY 53
R+R + VE D+S + E R ++ L + + Q L+ +
Sbjct: 214 RRRHERRLVEVDSSRQQEYDFKMAQALEELRSQHDEQVRLYKLELEQTYQAKLDSAKLSS 273
Query: 54 DFEDDCDSLTWEETEETLLLWEDFSGYAMAAAEAQGEQQEDSLEKVIKDTESLFKTREKE 113
D D S EE +E + E S Y ++ + Q ED I++ E +
Sbjct: 274 DQNDKAASAAREELKEARMRLESLS-YQLSGLQKQASAAEDR----IRELEEAMAGERDK 328
Query: 114 YQETIDQIELELATAKNDMNRHLHEYMEMCSMKRGLDVQMETCRRLITQSGDRKSPAFTA 173
+++ +D E E+ ++ M + L EY E+ +K LD+++ R+L+ +R
Sbjct: 329 FRKMLDAKEQEMTEMRDVMQQQLAEYQELLDVKLALDMEINAYRKLLEGEEER------- 381
Query: 174 VPLSDPPPPPSEAEDSDRDVSSDSSM 199
L P P S S SS S+
Sbjct: 382 --LKLSPSPSSRVTVSRATSSSSGSL 405
>gi|21264345 peripherin [Homo sapiens]
Length = 470
Score = 48.5 bits (114), Expect = 4e-06
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 94 DSLEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEMCSMKRGLDVQM 153
++L + +++ E F YQ ++E EL K +M RHL EY E+ ++K LD+++
Sbjct: 334 EALLRQLRELEEQFALEAGGYQAGAARLEEELRQLKEEMARHLREYQELLNVKMALDIEI 393
Query: 154 ETCRRLITQSGDRKSPAF---------TAVPLSDPP 180
T R+L+ R S T VP +PP
Sbjct: 394 ATYRKLLEGEESRISVPVHSFASLNIKTTVPEVEPP 429
>gi|226246665 keratin 72 isoform 2 [Homo sapiens]
Length = 469
Score = 47.8 bits (112), Expect = 6e-06
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 4/111 (3%)
Query: 58 DCDSLTWEETEETLLLWEDFSGYAMAAAEAQGEQQEDSLEKVIKDTESLFKTREKEYQET 117
D DS+ E + +E+ + + A AE + + LE I D E K+ +
Sbjct: 291 DLDSIIAEVRAQ----YEEIALKSKAEAETLYQTKCADLETAIADAEQRGDCALKDARAK 346
Query: 118 IDQIELELATAKNDMNRHLHEYMEMCSMKRGLDVQMETCRRLITQSGDRKS 168
+D++E L AK ++ R L EY E+ S+K LD+++ T R+L+ R S
Sbjct: 347 LDELEGALHQAKEELARMLREYQELVSLKLALDMEIATYRKLLESEECRMS 397
>gi|125628636 keratin 80 isoform a [Homo sapiens]
Length = 452
Score = 47.4 bits (111), Expect = 8e-06
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 96 LEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEMCSMKRGLDVQMET 155
LE+ IK E + ++ + + Q+E L AK DM R L +Y E+ ++K LD+++ T
Sbjct: 323 LEENIKTAEEQGELAFQDAKTKLAQLEAALQQAKQDMARQLRKYQELMNVKLALDIEIAT 382
Query: 156 CRRLIT-QSGDRKSPAFTAV 174
R+L+ + G SP+ T V
Sbjct: 383 YRKLVEGEEGRMDSPSATVV 402
>gi|28173564 keratin 73 [Homo sapiens]
Length = 540
Score = 47.4 bits (111), Expect = 8e-06
Identities = 27/83 (32%), Positives = 45/83 (54%)
Query: 90 EQQEDSLEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEMCSMKRGL 149
++Q +LE I D E K+ + +D++E L AK ++ R L EY E+ S+K L
Sbjct: 368 KKQCANLETAIADAEQRGDCALKDARAKLDELEGALQQAKEELARMLREYQELLSVKLSL 427
Query: 150 DVQMETCRRLITQSGDRKSPAFT 172
D+++ T R+L+ R S +T
Sbjct: 428 DIEIATYRKLLEGEECRMSGEYT 450
>gi|125628632 keratin 80 isoform b [Homo sapiens]
Length = 422
Score = 47.4 bits (111), Expect = 8e-06
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 96 LEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEMCSMKRGLDVQMET 155
LE+ IK E + ++ + + Q+E L AK DM R L +Y E+ ++K LD+++ T
Sbjct: 323 LEENIKTAEEQGELAFQDAKTKLAQLEAALQQAKQDMARQLRKYQELMNVKLALDIEIAT 382
Query: 156 CRRLIT-QSGDRKSPAFTAV 174
R+L+ + G SP+ T V
Sbjct: 383 YRKLVEGEEGRMDSPSATVV 402
>gi|153791158 keratin 75 [Homo sapiens]
Length = 551
Score = 45.4 bits (106), Expect = 3e-05
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 90 EQQEDSLEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEMCSMKRGL 149
++Q SL+ I D E + K+ + + +E L AK DM R L EY E+ ++K L
Sbjct: 385 KKQCSSLQTAIADAEQRGELALKDARAKLVDLEEALQKAKQDMARLLREYQELMNIKLAL 444
Query: 150 DVQMETCRRLI-----TQSGDRKSPAFTAVPLS 177
DV++ T R+L+ SG+ SP +V S
Sbjct: 445 DVEIATYRKLLEGEECRLSGEGVSPVNISVVTS 477
>gi|28372503 keratin 72 isoform 1 [Homo sapiens]
Length = 511
Score = 45.1 bits (105), Expect = 4e-05
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 90 EQQEDSLEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEMCSMKRGL 149
++Q LE I D E K+ + +D++E L AK ++ R L EY E+ S+K L
Sbjct: 361 KKQCADLETAIADAEQRGDCALKDARAKLDELEGALHQAKEELARMLREYQELVSLKLAL 420
Query: 150 DVQMETCRRLITQSGDRKS 168
D+++ T R+L+ R S
Sbjct: 421 DMEIATYRKLLESEECRMS 439
>gi|67782365 keratin 7 [Homo sapiens]
Length = 469
Score = 45.1 bits (105), Expect = 4e-05
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 90 EQQEDSLEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEMCSMKRGL 149
+ Q LE I + E + K+ + +++E L K DM R L EY E+ S+K L
Sbjct: 326 KNQRAKLEAAIAEAEERGELALKDARAKQEELEAALQRGKQDMARQLREYQELMSVKLAL 385
Query: 150 DVQMETCRRLI 160
D+++ T R+L+
Sbjct: 386 DIEIATYRKLL 396
>gi|32567786 keratin 6L [Homo sapiens]
Length = 535
Score = 45.1 bits (105), Expect = 4e-05
Identities = 23/79 (29%), Positives = 43/79 (54%)
Query: 90 EQQEDSLEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEMCSMKRGL 149
++Q L+ I + E + K+ Q+ + +++ L AK D+ R L +Y E+ ++K L
Sbjct: 380 KKQCQQLQTAIAEAEQRGELALKDAQKKLGDLDVALHQAKEDLTRLLRDYQELMNVKLAL 439
Query: 150 DVQMETCRRLITQSGDRKS 168
DV++ T R+L+ R S
Sbjct: 440 DVEIATYRKLLESEESRMS 458
>gi|226246663 keratin 72 isoform 1 [Homo sapiens]
Length = 511
Score = 45.1 bits (105), Expect = 4e-05
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 90 EQQEDSLEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEMCSMKRGL 149
++Q LE I D E K+ + +D++E L AK ++ R L EY E+ S+K L
Sbjct: 361 KKQCADLETAIADAEQRGDCALKDARAKLDELEGALHQAKEELARMLREYQELVSLKLAL 420
Query: 150 DVQMETCRRLITQSGDRKS 168
D+++ T R+L+ R S
Sbjct: 421 DMEIATYRKLLESEECRMS 439
>gi|148277620 type I hair keratin KA35 [Homo sapiens]
Length = 491
Score = 44.7 bits (104), Expect = 5e-05
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 91 QQEDSLEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEMCSMKRGLD 150
+ DS E ++ +TE+ + + Q ID +E +LA + + R EY + +K L+
Sbjct: 331 RMRDSQECILTETEARYTALLTQIQSLIDNLEAQLAEIRCALERQNQEYEILLDVKSRLE 390
Query: 151 VQMETCRRLITQSGDRKSPAFTAVPLSDPPP 181
++ T R L+ +S D K P + +P P
Sbjct: 391 CEITTYRSLL-ESSDGKRPCYPRATKCEPSP 420
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.307 0.125 0.344
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,522,510
Number of Sequences: 37866
Number of extensions: 387607
Number of successful extensions: 3612
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 153
Number of HSP's that attempted gapping in prelim test: 3274
Number of HSP's gapped (non-prelim): 461
length of query: 200
length of database: 18,247,518
effective HSP length: 97
effective length of query: 103
effective length of database: 14,574,516
effective search space: 1501175148
effective search space used: 1501175148
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.