Guide to the Human Genome
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Name: LOC100129958 Sequence: fasta or formatted (315aa) NCBI GI: 169169468
Description:

PREDICTED: similar to hCG1643231

Not currently referenced in the text

Other entries for this name:
alt prot {313aa} PREDICTED: similar to hCG1643231
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         21           2
 C cysteine            1.0          3           1
 D aspartate           4.8         15           2
 E glutamate           8.6         27           2
 F phenylalanine       2.5          8           1
 G glycine             5.4         17           2
 H histidine           1.0          3           1
 I isoleucine          4.4         14           1
 K lysine             10.2         32           2
 L leucine            11.4         36           2
 M methionine          4.8         15           1
 N asparagine          5.7         18           2
 P proline             1.6          5           1
 Q glutamine           6.7         21           3
 R arginine            3.2         10           1
 S serine              9.5         30           3
 T threonine           5.1         16           2
 V valine              3.8         12           2
 W tryptophan          1.0          3           1
 Y tyrosine            2.9          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1643231 
LOC100129958          0.983   PREDICTED: similar to hCG1643231 
KRT8                  0.397   keratin 8 
KRT72                 0.286   keratin 72 isoform 2 
KRT5                  0.246   keratin 5 
KRT6A                 0.239   keratin 6A 
KRT6C                 0.236   keratin 6C 
KRT6B                 0.236   keratin 6B 
KRT79                 0.224   keratin 6L 
KRT84                 0.220   keratin, hair, basic, 4 
KRT75                 0.220   keratin 75 
KRT3                  0.220   keratin 3 
KRT7                  0.219   keratin 7 
KRT1                  0.215   keratin 1 
KRT71                 0.214   keratin 71 
KRT4                  0.212   keratin 4 
KRT76                 0.212   keratin 76 
KRT72                 0.210   keratin 72 isoform 1 
KRT72                 0.210   keratin 72 isoform 1 
KRT2                  0.207   keratin 2 
KRT73                 0.205   keratin 73 
KRT77                 0.203   keratin 77 
KRT74                 0.202   keratin 6 irs4 
KRT82                 0.183   keratin 82 
KRT85                 0.183   keratin 85 
LOC100293351          0.176   PREDICTED: hypothetical protein isoform 2 
LOC100293351          0.176   PREDICTED: hypothetical protein isoform 1 
LOC100293351          0.176   PREDICTED: hypothetical protein isoform 3 
KRT86                 0.176   keratin 86 
KRT81                 0.176   keratin, hair, basic, 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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