Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100129958 Sequence: fasta or formatted (313aa) NCBI GI: 169168829
Description:

PREDICTED: similar to hCG1643231

Not currently referenced in the text

Other entries for this name:
alt prot {315aa} PREDICTED: similar to hCG1643231
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         21           2
 C cysteine            1.0          3           1
 D aspartate           4.8         15           2
 E glutamate           8.0         25           2
 F phenylalanine       2.6          8           1
 G glycine             5.4         17           2
 H histidine           1.0          3           1
 I isoleucine          4.5         14           1
 K lysine             10.2         32           2
 L leucine            11.5         36           2
 M methionine          4.8         15           1
 N asparagine          5.8         18           2
 P proline             1.6          5           1
 Q glutamine           6.7         21           3
 R arginine            3.2         10           1
 S serine              9.6         30           3
 T threonine           5.1         16           2
 V valine              3.8         12           2
 W tryptophan          1.0          3           1
 Y tyrosine            2.9          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1643231 
LOC100129958          0.988   PREDICTED: similar to hCG1643231 
KRT8                  0.399   keratin 8 
KRT72                 0.295   keratin 72 isoform 2 
KRT5                  0.254   keratin 5 
KRT6A                 0.247   keratin 6A 
KRT6C                 0.244   keratin 6C 
KRT6B                 0.244   keratin 6B 
KRT79                 0.230   keratin 6L 
KRT84                 0.230   keratin, hair, basic, 4 
KRT3                  0.228   keratin 3 
KRT75                 0.228   keratin 75 
KRT7                  0.225   keratin 7 
KRT1                  0.221   keratin 1 
KRT4                  0.221   keratin 4 
KRT71                 0.221   keratin 71 
KRT76                 0.218   keratin 76 
KRT72                 0.216   keratin 72 isoform 1 
KRT72                 0.216   keratin 72 isoform 1 
KRT2                  0.216   keratin 2 
KRT73                 0.213   keratin 73 
KRT77                 0.213   keratin 77 
KRT74                 0.208   keratin 6 irs4 
KRT85                 0.193   keratin 85 
KRT82                 0.191   keratin 82 
LOC100293351          0.186   PREDICTED: hypothetical protein isoform 2 
LOC100293351          0.186   PREDICTED: hypothetical protein isoform 1 
LOC100293351          0.186   PREDICTED: hypothetical protein isoform 3 
KRT86                 0.186   keratin 86 
KRT81                 0.186   keratin, hair, basic, 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press