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Search of human proteins with 89057843
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|89057843 PREDICTED: hypothetical protein LOC284801 [Homo
sapiens]
(228 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169214778 PREDICTED: hypothetical protein LOC284801 [Homo sap... 471 e-133
gi|89058023 PREDICTED: hypothetical protein LOC284801 [Homo sapi... 471 e-133
gi|89057843 PREDICTED: hypothetical protein LOC284801 [Homo sapi... 471 e-133
gi|22547159 tetratricopeptide repeat domain 19 [Homo sapiens] 40 0.001
gi|122937321 UNC homeobox [Homo sapiens] 40 0.002
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 39 0.005
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 39 0.005
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 39 0.005
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 38 0.006
gi|48762934 alpha 2 type I collagen [Homo sapiens] 38 0.008
gi|239756597 PREDICTED: hypothetical protein [Homo sapiens] 37 0.011
gi|239744051 PREDICTED: hypothetical protein XP_002343025 [Homo ... 37 0.011
gi|237757312 synaptojanin 1 isoform c [Homo sapiens] 37 0.018
gi|239750121 PREDICTED: hypothetical protein XP_002347280 [Homo ... 37 0.018
gi|188219577 ring finger protein 19B isoform a [Homo sapiens] 37 0.018
gi|188219579 ring finger protein 19B isoform b [Homo sapiens] 37 0.018
gi|239749631 PREDICTED: hypothetical protein [Homo sapiens] 36 0.031
gi|239743906 PREDICTED: hypothetical protein XP_002342988 [Homo ... 36 0.031
gi|237757310 synaptojanin 1 isoform a [Homo sapiens] 35 0.041
gi|237757308 synaptojanin 1 isoform b [Homo sapiens] 35 0.041
gi|148539870 histone deacetylase 7 isoform d [Homo sapiens] 35 0.041
gi|169234807 histone deacetylase 7 isoform a [Homo sapiens] 35 0.041
gi|239757414 PREDICTED: hypothetical protein XP_002345432 [Homo ... 35 0.069
gi|224465238 hypothetical protein LOC283999 [Homo sapiens] 34 0.090
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 34 0.090
gi|239755634 PREDICTED: hypothetical protein [Homo sapiens] 34 0.090
gi|239744429 PREDICTED: hypothetical protein XP_002343157 [Homo ... 34 0.090
gi|114431216 tumor protein p53 inducible protein 13 [Homo sapiens] 34 0.090
gi|13994287 BTE-binding protein 4 [Homo sapiens] 34 0.12
gi|239752764 PREDICTED: hypothetical protein [Homo sapiens] 34 0.12
>gi|169214778 PREDICTED: hypothetical protein LOC284801 [Homo
sapiens]
Length = 228
Score = 471 bits (1213), Expect = e-133
Identities = 228/228 (100%), Positives = 228/228 (100%)
Query: 1 MVALHKGRIPPAGPSVLAGWDAADSERWLRAAFRPASDPPPPRVSSPPAPLPSRDRCGRR 60
MVALHKGRIPPAGPSVLAGWDAADSERWLRAAFRPASDPPPPRVSSPPAPLPSRDRCGRR
Sbjct: 1 MVALHKGRIPPAGPSVLAGWDAADSERWLRAAFRPASDPPPPRVSSPPAPLPSRDRCGRR 60
Query: 61 RLRGTWSGRLALGKRPTVGARRSPGAGPGRRMDENHERCGPGVEFVAVVASGPRWRDQGL 120
RLRGTWSGRLALGKRPTVGARRSPGAGPGRRMDENHERCGPGVEFVAVVASGPRWRDQGL
Sbjct: 61 RLRGTWSGRLALGKRPTVGARRSPGAGPGRRMDENHERCGPGVEFVAVVASGPRWRDQGL 120
Query: 121 VRQVLVGAEGLPASQAGRRGTALVSVAVGSRGRVFLVARPCLRFLPQPPLCGLPGALALA 180
VRQVLVGAEGLPASQAGRRGTALVSVAVGSRGRVFLVARPCLRFLPQPPLCGLPGALALA
Sbjct: 121 VRQVLVGAEGLPASQAGRRGTALVSVAVGSRGRVFLVARPCLRFLPQPPLCGLPGALALA 180
Query: 181 VPGPCLSAPPSPPAARRSSLLPERLTGFTSVGGRVWDRTGHRLVEKKE 228
VPGPCLSAPPSPPAARRSSLLPERLTGFTSVGGRVWDRTGHRLVEKKE
Sbjct: 181 VPGPCLSAPPSPPAARRSSLLPERLTGFTSVGGRVWDRTGHRLVEKKE 228
>gi|89058023 PREDICTED: hypothetical protein LOC284801 [Homo
sapiens]
Length = 228
Score = 471 bits (1213), Expect = e-133
Identities = 228/228 (100%), Positives = 228/228 (100%)
Query: 1 MVALHKGRIPPAGPSVLAGWDAADSERWLRAAFRPASDPPPPRVSSPPAPLPSRDRCGRR 60
MVALHKGRIPPAGPSVLAGWDAADSERWLRAAFRPASDPPPPRVSSPPAPLPSRDRCGRR
Sbjct: 1 MVALHKGRIPPAGPSVLAGWDAADSERWLRAAFRPASDPPPPRVSSPPAPLPSRDRCGRR 60
Query: 61 RLRGTWSGRLALGKRPTVGARRSPGAGPGRRMDENHERCGPGVEFVAVVASGPRWRDQGL 120
RLRGTWSGRLALGKRPTVGARRSPGAGPGRRMDENHERCGPGVEFVAVVASGPRWRDQGL
Sbjct: 61 RLRGTWSGRLALGKRPTVGARRSPGAGPGRRMDENHERCGPGVEFVAVVASGPRWRDQGL 120
Query: 121 VRQVLVGAEGLPASQAGRRGTALVSVAVGSRGRVFLVARPCLRFLPQPPLCGLPGALALA 180
VRQVLVGAEGLPASQAGRRGTALVSVAVGSRGRVFLVARPCLRFLPQPPLCGLPGALALA
Sbjct: 121 VRQVLVGAEGLPASQAGRRGTALVSVAVGSRGRVFLVARPCLRFLPQPPLCGLPGALALA 180
Query: 181 VPGPCLSAPPSPPAARRSSLLPERLTGFTSVGGRVWDRTGHRLVEKKE 228
VPGPCLSAPPSPPAARRSSLLPERLTGFTSVGGRVWDRTGHRLVEKKE
Sbjct: 181 VPGPCLSAPPSPPAARRSSLLPERLTGFTSVGGRVWDRTGHRLVEKKE 228
>gi|89057843 PREDICTED: hypothetical protein LOC284801 [Homo
sapiens]
Length = 228
Score = 471 bits (1213), Expect = e-133
Identities = 228/228 (100%), Positives = 228/228 (100%)
Query: 1 MVALHKGRIPPAGPSVLAGWDAADSERWLRAAFRPASDPPPPRVSSPPAPLPSRDRCGRR 60
MVALHKGRIPPAGPSVLAGWDAADSERWLRAAFRPASDPPPPRVSSPPAPLPSRDRCGRR
Sbjct: 1 MVALHKGRIPPAGPSVLAGWDAADSERWLRAAFRPASDPPPPRVSSPPAPLPSRDRCGRR 60
Query: 61 RLRGTWSGRLALGKRPTVGARRSPGAGPGRRMDENHERCGPGVEFVAVVASGPRWRDQGL 120
RLRGTWSGRLALGKRPTVGARRSPGAGPGRRMDENHERCGPGVEFVAVVASGPRWRDQGL
Sbjct: 61 RLRGTWSGRLALGKRPTVGARRSPGAGPGRRMDENHERCGPGVEFVAVVASGPRWRDQGL 120
Query: 121 VRQVLVGAEGLPASQAGRRGTALVSVAVGSRGRVFLVARPCLRFLPQPPLCGLPGALALA 180
VRQVLVGAEGLPASQAGRRGTALVSVAVGSRGRVFLVARPCLRFLPQPPLCGLPGALALA
Sbjct: 121 VRQVLVGAEGLPASQAGRRGTALVSVAVGSRGRVFLVARPCLRFLPQPPLCGLPGALALA 180
Query: 181 VPGPCLSAPPSPPAARRSSLLPERLTGFTSVGGRVWDRTGHRLVEKKE 228
VPGPCLSAPPSPPAARRSSLLPERLTGFTSVGGRVWDRTGHRLVEKKE
Sbjct: 181 VPGPCLSAPPSPPAARRSSLLPERLTGFTSVGGRVWDRTGHRLVEKKE 228
>gi|22547159 tetratricopeptide repeat domain 19 [Homo sapiens]
Length = 501
Score = 40.4 bits (93), Expect = 0.001
Identities = 58/181 (32%), Positives = 74/181 (40%), Gaps = 24/181 (13%)
Query: 33 FRPASDPPPPRVSSPPAPLPSRDRCGRRRLRGTWSG--RLALGKRPTVGARRSPGAGPGR 90
F + PPPP S P P+ R RRR R R A + +P G R
Sbjct: 12 FARSPAPPPPSRSGAPPQPPATLRPSRRRTRPPRPADRRDAPADCAYLWRILTPRRGRAR 71
Query: 91 RMDENHERCGPGVEFVAVVASGPRWRDQGLVRQVLVGAEGL-PASQAGRRGT--ALVSVA 147
R D G V + GP +G R+V+ G E + PA + GR G+ L+S +
Sbjct: 72 RSDVGARHRACGRRDVLLSRQGPA-NPEG-ARRVVGGQERVWPAVRRGRGGSMFRLLSWS 129
Query: 148 VGSRGRVFLVARPC----LRFLPQPPLCGLPGALALAVPGPCLSAPPS--PPAARRSSLL 201
+G RG + R C R LP GL G PGP + PPS P R LL
Sbjct: 130 LG-RGFLRAAGRRCRGCSARLLP-----GLAGG-----PGPEVQVPPSRVAPHGRGPGLL 178
Query: 202 P 202
P
Sbjct: 179 P 179
>gi|122937321 UNC homeobox [Homo sapiens]
Length = 531
Score = 40.0 bits (92), Expect = 0.002
Identities = 53/189 (28%), Positives = 63/189 (33%), Gaps = 47/189 (24%)
Query: 38 DPPPPRVSSP---------PAPLPSRDRCGRRRLRGTWSGRLALGKRPTVGARRSPGAGP 88
+PPPP P AP P G GT +R G P P
Sbjct: 248 EPPPPAAKGPGAHASGAAGTAPAPP----GEPPAPGTCDPAFYPSQRSGAG----PQPRP 299
Query: 89 GRRMDENHERCGPGVEFVAVVASGPRWRDQGLVRQVLVGAEGLPASQAGRRGTALVSVAV 148
GR D++ CGPG AV GL + E L + RR A + A
Sbjct: 300 GRPADKDAASCGPGAAVAAVERGA-----AGLPKASPFSVESLLSDSPPRRKAASNAAAA 354
Query: 149 GSRGRVFLVARPC-------------------LRFL-PQPPL---CGLPGALALAVPGPC 185
+ G F PC L FL PQ L GL A A P P
Sbjct: 355 AAAGLDFAPGLPCAPRTLIGKGHFLLYPITQPLGFLVPQAALKGGAGLEPAPKDAPPAP- 413
Query: 186 LSAPPSPPA 194
+ PP+PPA
Sbjct: 414 -AVPPAPPA 421
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 38.5 bits (88), Expect = 0.005
Identities = 58/214 (27%), Positives = 70/214 (32%), Gaps = 21/214 (9%)
Query: 11 PAGPSVLAGWDAADSERWLRAAFRPASDPPPPRVSSPPAPLPSRDRCGRRRLRGTWSGRL 70
P G G D A +R P P + PP PL R G G G+
Sbjct: 1191 PPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKG 1250
Query: 71 ALGKRPTVGARRSPG----AGPGRRMDENHERCGPGVEFVAVVASGPRWRDQGLVRQVLV 126
A G +GA G AGP + + R PG +V G V
Sbjct: 1251 AKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPG----SVGQQGRPGATGQAGPPGPV 1306
Query: 127 GAEGLPASQAGRRGTALVSVAVGSRGRVFLVARPCL------RFLPQPPLCGLPGALA-L 179
G GLP G RG A G G + L+ P R LP P G PG +
Sbjct: 1307 GPPGLP----GLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQ--GSPGQKGEM 1360
Query: 180 AVPGPCLSAPPSPPAARRSSLLPERLTGFTSVGG 213
+PG P P P+ G T GG
Sbjct: 1361 GIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGG 1394
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 38.5 bits (88), Expect = 0.005
Identities = 58/214 (27%), Positives = 70/214 (32%), Gaps = 21/214 (9%)
Query: 11 PAGPSVLAGWDAADSERWLRAAFRPASDPPPPRVSSPPAPLPSRDRCGRRRLRGTWSGRL 70
P G G D A +R P P + PP PL R G G G+
Sbjct: 1170 PPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKG 1229
Query: 71 ALGKRPTVGARRSPG----AGPGRRMDENHERCGPGVEFVAVVASGPRWRDQGLVRQVLV 126
A G +GA G AGP + + R PG +V G V
Sbjct: 1230 AKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPG----SVGQQGRPGATGQAGPPGPV 1285
Query: 127 GAEGLPASQAGRRGTALVSVAVGSRGRVFLVARPCL------RFLPQPPLCGLPGALA-L 179
G GLP G RG A G G + L+ P R LP P G PG +
Sbjct: 1286 GPPGLP----GLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQ--GSPGQKGEM 1339
Query: 180 AVPGPCLSAPPSPPAARRSSLLPERLTGFTSVGG 213
+PG P P P+ G T GG
Sbjct: 1340 GIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGG 1373
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 38.5 bits (88), Expect = 0.005
Identities = 58/214 (27%), Positives = 70/214 (32%), Gaps = 21/214 (9%)
Query: 11 PAGPSVLAGWDAADSERWLRAAFRPASDPPPPRVSSPPAPLPSRDRCGRRRLRGTWSGRL 70
P G G D A +R P P + PP PL R G G G+
Sbjct: 1277 PPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKG 1336
Query: 71 ALGKRPTVGARRSPG----AGPGRRMDENHERCGPGVEFVAVVASGPRWRDQGLVRQVLV 126
A G +GA G AGP + + R PG +V G V
Sbjct: 1337 AKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPG----SVGQQGRPGATGQAGPPGPV 1392
Query: 127 GAEGLPASQAGRRGTALVSVAVGSRGRVFLVARPCL------RFLPQPPLCGLPGALA-L 179
G GLP G RG A G G + L+ P R LP P G PG +
Sbjct: 1393 GPPGLP----GLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQ--GSPGQKGEM 1446
Query: 180 AVPGPCLSAPPSPPAARRSSLLPERLTGFTSVGG 213
+PG P P P+ G T GG
Sbjct: 1447 GIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGG 1480
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 38.1 bits (87), Expect = 0.006
Identities = 65/223 (29%), Positives = 80/223 (35%), Gaps = 57/223 (25%)
Query: 5 HKGRIPPAGP--SV----LAGWDAADSERWLRAA---------FRPASDPPPPRVSSPPA 49
H G P+GP SV L G D ER + A P DP P + PP
Sbjct: 923 HVGAPGPSGPPGSVGAPGLRGTPGKDGERGEKGAAGEEGSPGPVGPRGDPGAPGLPGPPG 982
Query: 50 -----------------PLPSRDRCGRRRLRGTWSGRLALGKRPTVGARRSPG--AGPGR 90
PL ++ CG+ +RG S ALG + G R +PG PG
Sbjct: 983 KGKDGEPGLRGSPGLPGPLGTKAACGK--VRG--SENCALGGQCVKGDRGAPGIPGSPGS 1038
Query: 91 RMDENHERCGPGVEFVAVVASGPRWRDQGLVRQVLVGAEGLPASQAGRRGTALVSVAVGS 150
R D GP SGP D+G G+ GLP G +G A A G+
Sbjct: 1039 RGDPGIGVAGPPGP------SGPPG-DKGSP-----GSRGLPGFP-GPQGPAGRDGAPGN 1085
Query: 151 RGRVFLVARPCLRFLPQPPLCGLPGALALAVPGPCLSAPPSPP 193
G +P L L P G + L C PP PP
Sbjct: 1086 PGERGPPGKPGLSSLLSP------GDINLLAKDVCNDCPPGPP 1122
Score = 27.7 bits (60), Expect = 8.5
Identities = 56/207 (27%), Positives = 67/207 (32%), Gaps = 38/207 (18%)
Query: 7 GRIPPAGPSVLAGWDAADSERWLRAAFRPASDPPPPRVSSPPAPLPSRDRCGRRRLRGTW 66
G + P GP+ G A + A A +P P P P G LRGT
Sbjct: 889 GELGPQGPT---GPPGAKGQEGAHGAPGAAGNPGAPGHVGAPGPSGPPGSVGAPGLRGTP 945
Query: 67 SGRLALGKRPTVGARRSPG-AGPGRRMDENHERCGPGVEFVAVVASGPRWRDQGLVRQVL 125
G++ G SPG GP R PG A GP + + L
Sbjct: 946 GKDGERGEKGAAGEEGSPGPVGP---------RGDPG----APGLPGPPGKGKD-GEPGL 991
Query: 126 VGAEGLP---------ASQAGRRGTALVSVAV-GSRGRVFLVARPCLRFLPQPPLCGLPG 175
G+ GLP G AL V G RG + P R G PG
Sbjct: 992 RGSPGLPGPLGTKAACGKVRGSENCALGGQCVKGDRGAPGIPGSPGSR--------GDPG 1043
Query: 176 ALALAVPGPCLSAPPSPPAARRSSLLP 202
PGP S PP + S LP
Sbjct: 1044 IGVAGPPGP--SGPPGDKGSPGSRGLP 1068
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 37.7 bits (86), Expect = 0.008
Identities = 51/170 (30%), Positives = 63/170 (37%), Gaps = 22/170 (12%)
Query: 11 PAGPSVLAGWDAADSERWLRAAFRPASDPPPPRVSSPPAPLPSRDRCGRRRLRGTWSGRL 70
P GP+ G A P P +S PP P G+ LRG +
Sbjct: 770 PPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGP---PGPAGKEGLRGPRGDQG 826
Query: 71 ALGKRPTVGARRSPG-AGPGRRMDENHERCGPGVEFVAVVASGPRWRDQGLVRQVLVGAE 129
+G+ VGA PG AG E PG GP QGL+ G
Sbjct: 827 PVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPG-------TPGP----QGLLG--APGIL 873
Query: 130 GLPASQAGRRGTALVSVAVGSRGRVFLVARPCLRFLP----QPPLCGLPG 175
GLP S+ G RG V+ AVG G + + P R P P + G PG
Sbjct: 874 GLPGSR-GERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSPGVNGAPG 922
Score = 28.9 bits (63), Expect = 3.8
Identities = 56/214 (26%), Positives = 70/214 (32%), Gaps = 29/214 (13%)
Query: 7 GRIPPAGPSVLAGWDAADSERWLRAAFRPASDPPPPRVSSPPAPLPSRDRCGRRRLRGTW 66
G I GPS G D E + A A P S P + G + +G
Sbjct: 604 GPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGP---SGLPGERGAAGIPGGKGEKGEP 660
Query: 67 SGRLALGKRPTVGARRSPGA----GPGRRMDENHERCGPGVEFVAVVASGPRWR--DQGL 120
R +G GAR +PGA GP + E G A GPR ++G
Sbjct: 661 GLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPA----GPRGSPGERGE 716
Query: 121 VRQVLVGAEGLPASQAGRRGTALVSVAVGSRGRVFLVARPCLRFLPQPPLCGLPGALALA 180
V PA AG+ G A G +G +V P P+
Sbjct: 717 VGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVG-------PTGPV---------G 760
Query: 181 VPGPCLSAPPSPPAARRSSLLPERLTGFTSVGGR 214
GP P PA R P +TGF GR
Sbjct: 761 AAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGR 794
>gi|239756597 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 37.4 bits (85), Expect = 0.011
Identities = 47/162 (29%), Positives = 64/162 (39%), Gaps = 27/162 (16%)
Query: 17 LAGWDAADSERWLRAAFRPASDPPPPRV---------------SSPPAPLPS----RDRC 57
LAGWD R L A + DP PP + + PAP+PS R R
Sbjct: 64 LAGWDEKSPVRDLVWAGQVLEDPTPPLIGRRNTAGFVYFTLTLEARPAPVPSLSLRRGRG 123
Query: 58 GRRRLRGTWSGRLALGKRPTVGARRSPGAGPGRRMDEN-HERCGPGV----EFVAVVASG 112
G R A+ P+ R P G GR + ++ HER PG+ E + A
Sbjct: 124 AAESAEGWRQERGAVCPGPSGWGRLRP-RGRGREVAQSRHERRPPGMRLARELEGIGAQA 182
Query: 113 PRWRDQGLVRQVLVGAEGLPASQ--AGRRGTALVSVAVGSRG 152
R +G+ +V AE + +Q A RR V +G G
Sbjct: 183 RAVRAEGVQHRVAHHAETMHLAQGRAARRQLLQRGVQLGRSG 224
>gi|239744051 PREDICTED: hypothetical protein XP_002343025 [Homo
sapiens]
Length = 306
Score = 37.4 bits (85), Expect = 0.011
Identities = 24/52 (46%), Positives = 28/52 (53%), Gaps = 8/52 (15%)
Query: 148 VGSRGRVFLVARPCLRFLPQPPLCGLP-------GALALAVPGPCLSAPPSP 192
VG R R L A C R LPQPPLC LP G++A ++ GP L P P
Sbjct: 18 VGVR-RAPLWASLCDRRLPQPPLCVLPSTASSEVGSVAASIQGPALGTRPCP 68
>gi|237757312 synaptojanin 1 isoform c [Homo sapiens]
Length = 1295
Score = 36.6 bits (83), Expect = 0.018
Identities = 47/180 (26%), Positives = 66/180 (36%), Gaps = 35/180 (19%)
Query: 34 RPASDPPPPRVSSPPAPLPSRDRCGRRRLRGTWSGRLALGKRPTVG-ARRSPGAGPGRRM 92
RPA PP S +P P+R G + GT ++ +G ++ SP AG
Sbjct: 1119 RPAPPQRPPPPSGARSPAPTRKEFGAPKSPGTT-------RKDNIGRSQPSPQAGLAGPG 1171
Query: 93 DENHERCGPGVEFVAVVASGPRWRDQGLVRQVLVGAEGLPASQAGRRGTALVSVAVGSRG 152
+ P + A V S P+ + ++ P SQ+ T S+G
Sbjct: 1172 PAGYSTARPTIPPRAGVISAPQSHARASAGRLT------PESQSKTSET--------SKG 1217
Query: 153 RVFL-------VARPCLRFLPQP------PLCGLPGALALAVPGPCLSAPPSPPAARRSS 199
FL A P LP P PL + + + P P L PP PP RSS
Sbjct: 1218 STFLPEPLKPQAAFPPQSSLPPPAQRLQEPLVPVAAPMPQSGPQPNLETPPQPPPRSRSS 1277
>gi|239750121 PREDICTED: hypothetical protein XP_002347280 [Homo
sapiens]
Length = 402
Score = 36.6 bits (83), Expect = 0.018
Identities = 41/154 (26%), Positives = 57/154 (37%), Gaps = 30/154 (19%)
Query: 2 VALHKGRIPPAGPSVLAGWDAADSERWLRAAFRPASDPPPPRVSSPPAPLPSRDRCGRRR 61
+++ G+ P AGPS A+ A PP RV + P+ SR +RR
Sbjct: 108 ISVTLGQAPRAGPSA--------------ASSAAAGKTPPSRVPAEPS---SRRGASKRR 150
Query: 62 LRGTWSGRLALGKRPTVGARRSPGAG--------PGRRMDENHE--RCGPGVEFVAVVAS 111
G R GA R P A P + HE R PGV + ++
Sbjct: 151 ESWRTDGERLRSGRGCAGAARGPDASLDTRREGWPRAAVVGRHEARRLKPGVSVSSSLSP 210
Query: 112 GPRWRDQGLVRQVLVGAE---GLPASQAGRRGTA 142
GP + + + L G PA+ RGTA
Sbjct: 211 GPPLQRSSSLNETLRGRRPPGPAPAAAGATRGTA 244
>gi|188219577 ring finger protein 19B isoform a [Homo sapiens]
Length = 732
Score = 36.6 bits (83), Expect = 0.018
Identities = 28/85 (32%), Positives = 34/85 (40%), Gaps = 12/85 (14%)
Query: 25 SERWLRAAFRPASDPPPPRVSSPPAPLPSRDRCGRRRLRGTWSGRLALGKRPTVGARRSP 84
S R RA +P ++PPPP PPAP P+ + AL P A
Sbjct: 42 SARGRRARAKPQAEPPPPAAQPPPAPAPAAAQGPPPE---------ALPAEPAAEAEAEA 92
Query: 85 GAG---PGRRMDENHERCGPGVEFV 106
A PG +E E GPG E V
Sbjct: 93 AAAAAEPGFDDEEAAEGGGPGAEEV 117
>gi|188219579 ring finger protein 19B isoform b [Homo sapiens]
Length = 587
Score = 36.6 bits (83), Expect = 0.018
Identities = 28/85 (32%), Positives = 34/85 (40%), Gaps = 12/85 (14%)
Query: 25 SERWLRAAFRPASDPPPPRVSSPPAPLPSRDRCGRRRLRGTWSGRLALGKRPTVGARRSP 84
S R RA +P ++PPPP PPAP P+ + AL P A
Sbjct: 42 SARGRRARAKPQAEPPPPAAQPPPAPAPAAAQGPPPE---------ALPAEPAAEAEAEA 92
Query: 85 GAG---PGRRMDENHERCGPGVEFV 106
A PG +E E GPG E V
Sbjct: 93 AAAAAEPGFDDEEAAEGGGPGAEEV 117
>gi|239749631 PREDICTED: hypothetical protein [Homo sapiens]
Length = 217
Score = 35.8 bits (81), Expect = 0.031
Identities = 45/156 (28%), Positives = 57/156 (36%), Gaps = 17/156 (10%)
Query: 43 RVSSPPAPLPSRDRCGRRRLRGTWSGRLALGKRPTVGARRSPGAGPGRRMDENHERCGPG 102
R + PP P SR+R +G WS ALG P A P R GP
Sbjct: 54 RRAEPPEPSYSRERRETMEGKGGWSA--ALGSLPPPPAAACTALKPATRRGSCSAPLGPA 111
Query: 103 VEFVAVVASGPRWRDQGLVRQVLVGAEGLPASQAGRRGTALVSVAVGSRGRVFLVARPCL 162
A PR G R GAE R T+ S++ +RG + +
Sbjct: 112 RR---CSARRPRLHQGGAGRLAAGGAEAGERRSPNRGATS--SLSPIARGAADVRPFSWV 166
Query: 163 RFLPQPPLCGLPGALALAVPGPCLSAPPSPPAARRS 198
LP+PP P AL L + PP+P RS
Sbjct: 167 GGLPRPP---APAALRLLL-------PPAPRRRARS 192
Score = 30.4 bits (67), Expect = 1.3
Identities = 27/71 (38%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 19 GWDAADSERWLRAAFRPASDPPPPRVSSPPAPLPSRDRCGRR--RLRGTWSGRLALGKRP 76
GW AA A + P R S APL RC R RL +GRLA G
Sbjct: 76 GWSAALGSLPPPPAAACTALKPATRRGSCSAPLGPARRCSARRPRLHQGGAGRLAAG-GA 134
Query: 77 TVGARRSPGAG 87
G RRSP G
Sbjct: 135 EAGERRSPNRG 145
>gi|239743906 PREDICTED: hypothetical protein XP_002342988 [Homo
sapiens]
Length = 217
Score = 35.8 bits (81), Expect = 0.031
Identities = 45/156 (28%), Positives = 57/156 (36%), Gaps = 17/156 (10%)
Query: 43 RVSSPPAPLPSRDRCGRRRLRGTWSGRLALGKRPTVGARRSPGAGPGRRMDENHERCGPG 102
R + PP P SR+R +G WS ALG P A P R GP
Sbjct: 54 RRAEPPEPSYSRERRETMEGKGGWSA--ALGSLPPPPAAACTALKPATRRGSCSAPLGPA 111
Query: 103 VEFVAVVASGPRWRDQGLVRQVLVGAEGLPASQAGRRGTALVSVAVGSRGRVFLVARPCL 162
A PR G R GAE R T+ S++ +RG + +
Sbjct: 112 RR---CSARRPRLHQGGAGRLAAGGAEAGERRSPNRGATS--SLSPIARGAADVRPFSWV 166
Query: 163 RFLPQPPLCGLPGALALAVPGPCLSAPPSPPAARRS 198
LP+PP P AL L + PP+P RS
Sbjct: 167 GGLPRPP---APAALRLLL-------PPAPRRRARS 192
Score = 30.4 bits (67), Expect = 1.3
Identities = 27/71 (38%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 19 GWDAADSERWLRAAFRPASDPPPPRVSSPPAPLPSRDRCGRR--RLRGTWSGRLALGKRP 76
GW AA A + P R S APL RC R RL +GRLA G
Sbjct: 76 GWSAALGSLPPPPAAACTALKPATRRGSCSAPLGPARRCSARRPRLHQGGAGRLAAG-GA 134
Query: 77 TVGARRSPGAG 87
G RRSP G
Sbjct: 135 EAGERRSPNRG 145
>gi|237757310 synaptojanin 1 isoform a [Homo sapiens]
Length = 1612
Score = 35.4 bits (80), Expect = 0.041
Identities = 53/189 (28%), Positives = 69/189 (36%), Gaps = 31/189 (16%)
Query: 39 PPPPRVSSPPA-PLPSR---DRCGRRRLRGTWSGRLALGKRPTVG-ARRSPGA--GPGRR 91
PPPPR +PP P P + G R T +G P+ G ARR A PG
Sbjct: 1147 PPPPRPVAPPTRPAPPQRPPPPSGARSPAPTRKEFGGIGAPPSPGVARREMEAPKSPGTT 1206
Query: 92 MDENHERCGPGVEFVAVVASGPRWRDQGLVRQVLVGAEG-LPASQAGRRGTA-------L 143
+N R P + +GP R + G + A Q+ R +A
Sbjct: 1207 RKDNIGRSQPSPQ---AGLAGPGPAGYSTARPTIPPRAGVISAPQSHARASAGRLTPESQ 1263
Query: 144 VSVAVGSRGRVFL-------VARPCLRFLPQP------PLCGLPGALALAVPGPCLSAPP 190
+ S+G FL A P LP P PL + + + P P L PP
Sbjct: 1264 SKTSETSKGSTFLPEPLKPQAAFPPQSSLPPPAQRLQEPLVPVAAPMPQSGPQPNLETPP 1323
Query: 191 SPPAARRSS 199
PP RSS
Sbjct: 1324 QPPPRSRSS 1332
>gi|237757308 synaptojanin 1 isoform b [Homo sapiens]
Length = 1350
Score = 35.4 bits (80), Expect = 0.041
Identities = 53/189 (28%), Positives = 69/189 (36%), Gaps = 31/189 (16%)
Query: 39 PPPPRVSSPPA-PLPSR---DRCGRRRLRGTWSGRLALGKRPTVG-ARRSPGA--GPGRR 91
PPPPR +PP P P + G R T +G P+ G ARR A PG
Sbjct: 1147 PPPPRPVAPPTRPAPPQRPPPPSGARSPAPTRKEFGGIGAPPSPGVARREMEAPKSPGTT 1206
Query: 92 MDENHERCGPGVEFVAVVASGPRWRDQGLVRQVLVGAEG-LPASQAGRRGTA-------L 143
+N R P + +GP R + G + A Q+ R +A
Sbjct: 1207 RKDNIGRSQPSPQ---AGLAGPGPAGYSTARPTIPPRAGVISAPQSHARASAGRLTPESQ 1263
Query: 144 VSVAVGSRGRVFL-------VARPCLRFLPQP------PLCGLPGALALAVPGPCLSAPP 190
+ S+G FL A P LP P PL + + + P P L PP
Sbjct: 1264 SKTSETSKGSTFLPEPLKPQAAFPPQSSLPPPAQRLQEPLVPVAAPMPQSGPQPNLETPP 1323
Query: 191 SPPAARRSS 199
PP RSS
Sbjct: 1324 QPPPRSRSS 1332
>gi|148539870 histone deacetylase 7 isoform d [Homo sapiens]
Length = 954
Score = 35.4 bits (80), Expect = 0.041
Identities = 34/125 (27%), Positives = 52/125 (41%), Gaps = 19/125 (15%)
Query: 34 RPASDPPPPRVSSPPAPLPSRDRCGRRRLRGTWSGRLA-------LGKRPTVGARRSPGA 86
R S+P PP ++PP P P + R + + R A L + P+ + G
Sbjct: 357 RTRSEPLPPSATAPPPPGPMQPRLEQLKTHVQVIKRSAKPSEKPRLRQIPSAEDLETDGG 416
Query: 87 GPGRRMDE--NHERCG---PGVEFVAVVASGPR---WRDQGLVRQVLVGAEG----LPAS 134
GPG+ +D+ H G P A + P+ W Q L ++ G+ G LP +
Sbjct: 417 GPGQVVDDGLEHRELGHGQPEARGPAPLQQHPQVLLWEQQRLAGRLPRGSTGDTVLLPLA 476
Query: 135 QAGRR 139
Q G R
Sbjct: 477 QGGHR 481
>gi|169234807 histone deacetylase 7 isoform a [Homo sapiens]
Length = 991
Score = 35.4 bits (80), Expect = 0.041
Identities = 34/125 (27%), Positives = 52/125 (41%), Gaps = 19/125 (15%)
Query: 34 RPASDPPPPRVSSPPAPLPSRDRCGRRRLRGTWSGRLA-------LGKRPTVGARRSPGA 86
R S+P PP ++PP P P + R + + R A L + P+ + G
Sbjct: 394 RTRSEPLPPSATAPPPPGPMQPRLEQLKTHVQVIKRSAKPSEKPRLRQIPSAEDLETDGG 453
Query: 87 GPGRRMDE--NHERCG---PGVEFVAVVASGPR---WRDQGLVRQVLVGAEG----LPAS 134
GPG+ +D+ H G P A + P+ W Q L ++ G+ G LP +
Sbjct: 454 GPGQVVDDGLEHRELGHGQPEARGPAPLQQHPQVLLWEQQRLAGRLPRGSTGDTVLLPLA 513
Query: 135 QAGRR 139
Q G R
Sbjct: 514 QGGHR 518
>gi|239757414 PREDICTED: hypothetical protein XP_002345432 [Homo
sapiens]
Length = 176
Score = 34.7 bits (78), Expect = 0.069
Identities = 45/133 (33%), Positives = 54/133 (40%), Gaps = 12/133 (9%)
Query: 24 DSERWLRAAFRPASDPPP---PRVSSPPAPLPSRDRCGRRRLRGTWSGRLALGKRPTVGA 80
D+ R AA R A+ P P P + PA S + RRR RGT AL +
Sbjct: 42 DAARVDAAALRAAARPGPLGRPPTRAGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPYHS 101
Query: 81 RRSPGAGPGRRMDENHERCGPGVEFVAVVASGPRWRDQGLVRQVLVGAEGLPASQAGRRG 140
R G GP + R P V GP+ D G RQV + G +QA RG
Sbjct: 102 ARPGGGGP----CQGSARFSPDPAAVRPQPRGPQ-PDSGSARQVPPDSRG---AQALHRG 153
Query: 141 TALVSVAV-GSRG 152
L S A G RG
Sbjct: 154 APLASPAPRGVRG 166
>gi|224465238 hypothetical protein LOC283999 [Homo sapiens]
Length = 394
Score = 34.3 bits (77), Expect = 0.090
Identities = 47/163 (28%), Positives = 64/163 (39%), Gaps = 23/163 (14%)
Query: 34 RPASDPPPPRVSSPPAPLPSRDRCGRRRLRGTWSGRLALGKRPTVGARRSPGAGPGRRMD 93
R +DPP SS P+R ++ W R + G R + PGA P R D
Sbjct: 43 RSLADPPS---SSQALHSPAR------QVHLVWLLR-SRGFREIKERAQGPGASPWGRWD 92
Query: 94 ENHERCGPGVEFVAVVASGPRWRDQGLVRQVLVGAEGLPASQAGRRGTALVSVAVGSRGR 153
+ P F A +++ + QG ++ G LPA+ G RG G G
Sbjct: 93 WS-----PSPRFAARLSTSSPF-PQGRAQRPQRGGVDLPATPGGPRGQC-----AGRSGD 141
Query: 154 VFLVARPCLRFLPQPPLCGLPGALALAVPGPCLSAPPSPPAAR 196
V + R R PP+ LP A P + PSPPA R
Sbjct: 142 V--LRRAGRRRARPPPVPRLPAPRAPRRPRGPATPDPSPPAGR 182
Score = 30.4 bits (67), Expect = 1.3
Identities = 32/90 (35%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 11 PAGPSVLAGWDAADSERWLRAAFRPASDPPP-PRVSSPPAPLPSRDRC------GRRRLR 63
PA P G A S LR A R + PPP PR+ +P AP R R
Sbjct: 125 PATPGGPRGQCAGRSGDVLRRAGRRRARPPPVPRLPAPRAPRRPRGPATPDPSPPAGRPH 184
Query: 64 GTWSGRLALGKRPTVGAR-RSPGAGPGRRM 92
G +GR A G+RP A+ R+PG +R+
Sbjct: 185 GP-AGRAAPGRRPGCTAQLRAPGRRGRQRL 213
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 34.3 bits (77), Expect = 0.090
Identities = 49/198 (24%), Positives = 70/198 (35%), Gaps = 21/198 (10%)
Query: 13 GPSVLAGWDAADSERWLRAAFRPASDPPPPRVSSPPAPLPSRDRCGRRRLRGTWSGRLAL 72
GP + G + P +P P + P P + G R GT +
Sbjct: 459 GPQGIRGQPGDPGVPGFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPV 518
Query: 73 GKRPTVGARRSPGAG--PGRRMDENHERCGPGVEFVAVVASGPRWRDQGLVRQVLVGAEG 130
G+R G R PG+ PG + + GP V +SGP+ R G G
Sbjct: 519 GERGAPGNRGFPGSDGLPGPKGAQGER--GP------VGSSGPKGSQGDPGRP---GEPG 567
Query: 131 LPASQAGRRGTALVSVAVGSRGRVFLVARPCLRFLPQPP----LCGLPGALALAVPGPCL 186
LP G RG G G++ + P P PP + G PG++ L P
Sbjct: 568 LP----GARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIRGQPGSMGLPGPKGSS 623
Query: 187 SAPPSPPAARRSSLLPER 204
P P A + + +R
Sbjct: 624 GDPGKPGEAGNAGVPGQR 641
Score = 28.9 bits (63), Expect = 3.8
Identities = 52/192 (27%), Positives = 67/192 (34%), Gaps = 28/192 (14%)
Query: 11 PAGPSVLAGWDAADSERWLRAAFRPASDPPPPRVSSPPAPLPSRDRCGRRRLRGTWSGRL 70
PAG G D A ER R PA P P P+ + G+ RG R
Sbjct: 1051 PAGNDGTPGRDGAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQ---RGDPGSRG 1107
Query: 71 ALGKRPTVGARRSPG-AGPGRRMDENHERCGPGVEFVAVVASGPRWRDQGLVRQVLVGAE 129
+G G R PG GP ++ +R G G R G +
Sbjct: 1108 PIGPPGRAGKRGLPGPQGPRGDKGDHGDRGDRG-------QKGHRG---------FTGLQ 1151
Query: 130 GLPASQA--GRRGTALVSVAVGSRGRVFLVARPCLRFLPQP--PL--CGLPGALALAVP- 182
GLP G +G+A + G RG V P P P+ G+ G++ A P
Sbjct: 1152 GLPGPPGPNGEQGSAGIPGPFGPRGPPGPVGPSGKEGNPGPLGPIGPPGVRGSVGEAGPE 1211
Query: 183 -GPCLSAPPSPP 193
P PP PP
Sbjct: 1212 GPPGEPGPPGPP 1223
>gi|239755634 PREDICTED: hypothetical protein [Homo sapiens]
Length = 449
Score = 34.3 bits (77), Expect = 0.090
Identities = 55/207 (26%), Positives = 71/207 (34%), Gaps = 44/207 (21%)
Query: 2 VALHKGRIPPAGPSVLAGWDAADSERWLRAAFRPASDPPPPRVSSPPAPLPSRDRCGRRR 61
+++ G+ P AGPS A+ A PP RV + P+ SR +RR
Sbjct: 108 ISVTLGQAPRAGPSA--------------ASSAAAGKTPPSRVPAEPS---SRRGASKRR 150
Query: 62 LRGTWSGRLALGKRPTVGARRSPGAG--------PGRRMDENHE--RCGPGVEFVAVVAS 111
G R GA R P A P + HE R PGV + ++
Sbjct: 151 ESWRTDGERLRSGRGCAGAARGPDASLDTRREGWPRAAVVGRHEARRLKPGVSVSSSLSP 210
Query: 112 GPRWRDQGLVRQVLVGAEGLPASQAGRRGTALVSVAVGSRGRVFLVARPCLRFLPQ-PPL 170
GP + + + L A S A G RP RFL +
Sbjct: 211 GPPLQRSSSLNETLRSAAAHAESSARECGKR--------------TQRPEQRFLCRGSSF 256
Query: 171 CG-LPGALALAVPGPCLSAPPSP-PAA 195
CG P L P P PP P PAA
Sbjct: 257 CGHRPQRLHPGRPLPPQRRPPGPAPAA 283
>gi|239744429 PREDICTED: hypothetical protein XP_002343157 [Homo
sapiens]
Length = 449
Score = 34.3 bits (77), Expect = 0.090
Identities = 55/207 (26%), Positives = 71/207 (34%), Gaps = 44/207 (21%)
Query: 2 VALHKGRIPPAGPSVLAGWDAADSERWLRAAFRPASDPPPPRVSSPPAPLPSRDRCGRRR 61
+++ G+ P AGPS A+ A PP RV + P+ SR +RR
Sbjct: 108 ISVTLGQAPRAGPSA--------------ASSAAAGKTPPSRVPAEPS---SRRGASKRR 150
Query: 62 LRGTWSGRLALGKRPTVGARRSPGAG--------PGRRMDENHE--RCGPGVEFVAVVAS 111
G R GA R P A P + HE R PGV + ++
Sbjct: 151 ESWRTDGERLRSGRGCAGAARGPDASLDTRREGWPRAAVVGRHEARRLKPGVSVSSSLSP 210
Query: 112 GPRWRDQGLVRQVLVGAEGLPASQAGRRGTALVSVAVGSRGRVFLVARPCLRFLPQ-PPL 170
GP + + + L A S A G RP RFL +
Sbjct: 211 GPPLQRSSSLNETLRSAAAHAESSARECGKR--------------TQRPEQRFLCRGSSF 256
Query: 171 CG-LPGALALAVPGPCLSAPPSP-PAA 195
CG P L P P PP P PAA
Sbjct: 257 CGHRPQRLHPGRPLPPQRRPPGPAPAA 283
>gi|114431216 tumor protein p53 inducible protein 13 [Homo sapiens]
Length = 393
Score = 34.3 bits (77), Expect = 0.090
Identities = 22/51 (43%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 39 PPPPRVSSPPAPLPSRDRCGRRRLRGTWSGRLALGKRPTVGARRSPGAGPG 89
PP V+S PS RRRLR ALG +PT A R P A PG
Sbjct: 184 PPGTEVTSQGPRQPSSSGAKRRRLRA------ALGPQPTRSALRFPSASPG 228
>gi|13994287 BTE-binding protein 4 [Homo sapiens]
Length = 252
Score = 33.9 bits (76), Expect = 0.12
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 4 LHKGRIPPAGPSVLAGWDAADSERWLRAAFRPASDPPPPRVSSP 47
+H+GR P G AG D + R + P PPPP S P
Sbjct: 25 VHRGRPGPEGAGPAAGLDVRAARREAASPGTPGPPPPPPAASGP 68
>gi|239752764 PREDICTED: hypothetical protein [Homo sapiens]
Length = 370
Score = 33.9 bits (76), Expect = 0.12
Identities = 56/191 (29%), Positives = 65/191 (34%), Gaps = 51/191 (26%)
Query: 58 GRRRL-----RGTWSGRLALGKRPTVGARRSPGAGPGRRMDENHERCGPGVEFVAVVASG 112
GRRR RG G ALG RR PG R + G A + G
Sbjct: 72 GRRRACPGRGRGGLPGAAALGAGAQQPRRRRLAQPPGSRAPL---QVGGAPRRRAHLTGG 128
Query: 113 PRWRDQGLVRQVLVGAEGLPASQAGRRGTALVSVAVGSRGRVFLVARPCLRFLPQPPLCG 172
P R L A GLPAS+A L + +R R+ L + R LP P G
Sbjct: 129 PPRRRPPR----LAAAHGLPASEA----PGLRPDSARTRLRLRLASARLPRGLPPAPAAG 180
Query: 173 L--------------------------PG--------ALALAVPGPCLSAPPSPPAARRS 198
L PG +L P PCL PP+PPAAR
Sbjct: 181 LWRAGCTRLRPLLLQPPPMLSPGLAQSPGVELHARTLSLPAPSPAPCLP-PPAPPAARTP 239
Query: 199 SLLPERLTGFT 209
S T FT
Sbjct: 240 SAHSPAHTHFT 250
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.139 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,520,258
Number of Sequences: 37866
Number of extensions: 772675
Number of successful extensions: 7687
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 312
Number of HSP's that attempted gapping in prelim test: 6916
Number of HSP's gapped (non-prelim): 1081
length of query: 228
length of database: 18,247,518
effective HSP length: 99
effective length of query: 129
effective length of database: 14,498,784
effective search space: 1870343136
effective search space used: 1870343136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.