Guide to the Human Genome
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Name: LOC100289168 Sequence: fasta or formatted (306aa) NCBI GI: 239744051
Description:

PREDICTED: hypothetical protein XP_002343025

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         28           2
 C cysteine            2.9          9           2
 D aspartate           2.6          8           1
 E glutamate           5.9         18           2
 F phenylalanine       1.3          4           3
 G glycine            10.1         31           2
 H histidine           2.0          6           1
 I isoleucine          1.3          4           1
 K lysine              2.6          8           1
 L leucine            11.8         36           5
 M methionine          0.7          2           1
 N asparagine          0.7          2           1
 P proline             8.2         25           2
 Q glutamine           3.6         11           1
 R arginine            9.5         29           2
 S serine             12.1         37           2
 T threonine           4.6         14           1
 V valine              6.9         21           1
 W tryptophan          2.9          9           2
 Y tyrosine            1.3          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343025 
LOC284801             0.020   PREDICTED: hypothetical protein LOC284801 
LOC284801             0.020   PREDICTED: hypothetical protein LOC284801 
LOC284801             0.020   PREDICTED: hypothetical protein LOC284801 
LOC100129733          0.017   PREDICTED: hypothetical protein 
FLJ31945              0.017   PREDICTED: hypothetical protein 
LOC100129733          0.017   PREDICTED: hypothetical protein 
LOC100287063          0.017   PREDICTED: hypothetical protein 
FLJ31945              0.017   PREDICTED: hypothetical protein 
LOC100129733          0.017   PREDICTED: hypothetical protein 
LOC100128398          0.015   PREDICTED: hypothetical protein 
LOC100128398          0.015   PREDICTED: hypothetical protein 
LOC100128398          0.015   PREDICTED: hypothetical protein 
LOC100130128          0.015   PREDICTED: hypothetical protein 
LOC643355             0.015   PREDICTED: hypothetical protein 
LOC100130128          0.015   PREDICTED: hypothetical protein 
LOC100130128          0.015   PREDICTED: hypothetical protein 
LOC100291908          0.013   PREDICTED: hypothetical protein XP_002345432 
LOC730456             0.013   PREDICTED: hypothetical protein 
FLJ31945              0.013   PREDICTED: hypothetical protein 
LOC441086             0.013   PREDICTED: hypothetical protein 
LOC441086             0.013   PREDICTED: hypothetical protein 
FAM64A                0.012   family with sequence similarity 64, member A 
LOC727804             0.012   PREDICTED: hypothetical protein 
LOC100292680          0.012   PREDICTED: similar to hCG2003440 
KIFC2                 0.012   kinesin family member C2 
DSG4                  0.012   desmoglein 4 isoform 2 
LOC730456             0.010   PREDICTED: hypothetical protein 
LOC100293319          0.010   PREDICTED: hypothetical protein 
LOC645722             0.010   PREDICTED: similar to hCG2037003 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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