Guide to the Human Genome
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Name: LOC100287837 Sequence: fasta or formatted (449aa) NCBI GI: 239744429
Description:

PREDICTED: hypothetical protein XP_002343157

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.1         59           3
 C cysteine            3.6         16           4
 D aspartate           1.8          8           1
 E glutamate           6.5         29           4
 F phenylalanine       0.9          4           1
 G glycine            12.2         55           3
 H histidine           2.2         10           1
 I isoleucine          0.4          2           1
 K lysine              2.7         12           1
 L leucine             6.7         30           2
 M methionine          0.2          1           1
 N asparagine          0.9          4           1
 P proline            11.1         50           2
 Q glutamine           2.9         13           1
 R arginine           14.9         67           3
 S serine             10.9         49           3
 T threonine           4.0         18           2
 V valine              3.3         15           2
 W tryptophan          1.6          7           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343157 
LOC100293604          1.000   PREDICTED: hypothetical protein 
LOC100289721          0.863   PREDICTED: hypothetical protein XP_002347280 
SRRM2                 0.032   splicing coactivator subunit SRm300 
FLJ37078              0.028   hypothetical protein LOC222183 
LOC100290372          0.028   PREDICTED: hypothetical protein XP_002346788 
LOC100288606          0.028   PREDICTED: hypothetical protein XP_002342652 
LOC728503             0.027   PREDICTED: hypothetical protein 
LOC728503             0.027   PREDICTED: hypothetical protein 
LOC728503             0.027   PREDICTED: hypothetical protein 
PRB4                  0.025   proline-rich protein BstNI subfamily 4 precursor [Ho...
RP1L1                 0.024   retinitis pigmentosa 1-like 1 
FLJ31945              0.024   PREDICTED: hypothetical protein 
TAF4                  0.024   TBP-associated factor 4 
LOC100130360          0.023   PREDICTED: hypothetical protein 
LOC100292058          0.023   PREDICTED: hypothetical protein XP_002344766 
LOC100290367          0.023   PREDICTED: hypothetical protein XP_002347417 
LOC100288730          0.023   PREDICTED: hypothetical protein XP_002343287 
CLK3                  0.023   CDC-like kinase 3 isoform a 
SCAF1                 0.023   SR-related CTD-associated factor 1 
SFRS16                0.022   splicing factor, arginine/serine-rich 16 
AGAP2                 0.022   centaurin, gamma 1 isoform PIKE-L 
LOC440829             0.022   PREDICTED: transmembrane protein 46-like 
LOC100129571          0.021   PREDICTED: similar to hCG1646049 
LOC731282             0.021   PREDICTED: hypothetical protein 
LOC100129571          0.021   PREDICTED: similar to hCG1646049 
LOC100129571          0.021   PREDICTED: similar to hCG1646049 
LOC100289284          0.021   PREDICTED: hypothetical protein XP_002342335 
SPEG                  0.021   SPEG complex locus 
SHANK1                0.021   SH3 and multiple ankyrin repeat domains 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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