Guide to the Human Genome
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Name: LOC100292553 Sequence: fasta or formatted (249aa) NCBI GI: 239756597
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.9         37           2
 C cysteine            2.8          7           2
 D aspartate           1.6          4           1
 E glutamate           6.0         15           1
 F phenylalanine       1.2          3           1
 G glycine            14.1         35           1
 H histidine           2.8          7           2
 I isoleucine          0.8          2           1
 K lysine              1.6          4           1
 L leucine             8.0         20           2
 M methionine          1.2          3           1
 N asparagine          0.4          1           1
 P proline             6.8         17           2
 Q glutamine           5.2         13           1
 R arginine           14.5         36           2
 S serine              5.6         14           1
 T threonine           2.8          7           1
 V valine              6.8         17           3
 W tryptophan          2.0          5           1
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290360          0.294   PREDICTED: hypothetical protein XP_002347701 
LOC100289223          0.294   PREDICTED: hypothetical protein XP_002344151 
COL2A1                0.027   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.027   collagen, type II, alpha 1 isoform 2 precursor [Hom...
FLJ37078              0.027   hypothetical protein LOC222183 
LOC284801             0.025   PREDICTED: hypothetical protein LOC284801 
LOC284801             0.025   PREDICTED: hypothetical protein LOC284801 
LOC284801             0.025   PREDICTED: hypothetical protein LOC284801 
MBD2                  0.025   methyl-CpG binding domain protein 2 testis-specific i...
MBD2                  0.025   methyl-CpG binding domain protein 2 isoform 1 
LOC339192             0.021   PREDICTED: hypothetical protein 
LOC339192             0.021   PREDICTED: hypothetical protein 
BHLHA9                0.021   PREDICTED: basic helix-loop-helix family, member a9...
BHLHA9                0.021   PREDICTED: basic helix-loop-helix family, member a9...
LOC339192             0.021   PREDICTED: hypothetical protein 
BHLHA9                0.021   PREDICTED: basic helix-loop-helix family, member a9...
CLK3                  0.021   CDC-like kinase 3 isoform a 
LOC100128640          0.021   PREDICTED: hypothetical protein 
COL7A1                0.021   alpha 1 type VII collagen precursor 
EDC4                  0.021   autoantigen RCD8 
COL9A1                0.016   alpha 1 type IX collagen isoform 1 precursor 
COL9A1                0.016   alpha 1 type IX collagen isoform 2 precursor 
LOC728650             0.016   PREDICTED: hypothetical protein 
LOC100292934          0.016   PREDICTED: hypothetical protein 
LOC728650             0.016   PREDICTED: hypothetical protein 
LOC100287297          0.016   PREDICTED: hypothetical protein XP_002342926 
FLJ36644              0.014   PREDICTED: hypothetical protein 
LOC100293371          0.014   PREDICTED: hypothetical protein 
LOC100287933          0.014   PREDICTED: hypothetical protein XP_002343257 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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