Guide to the Human Genome
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Name: LOC100287994 Sequence: fasta or formatted (217aa) NCBI GI: 239749631
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {217aa} PREDICTED: hypothetical protein XP_002342988
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.7         32           3
 C cysteine            2.3          5           1
 D aspartate           0.5          1           1
 E glutamate           5.5         12           1
 F phenylalanine       1.8          4           1
 G glycine            15.7         34           3
 H histidine           0.5          1           1
 I isoleucine          0.5          1           1
 K lysine              2.3          5           1
 L leucine             8.8         19           3
 M methionine          1.4          3           1
 N asparagine          0.9          2           1
 P proline            12.4         27           4
 Q glutamine           0.9          2           1
 R arginine           16.6         36           3
 S serine              8.3         18           2
 T threonine           1.8          4           1
 V valine              1.8          4           1
 W tryptophan          2.8          6           2
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100287994          1.000   PREDICTED: hypothetical protein XP_002342988 
LOC100292591          0.697   PREDICTED: hypothetical protein 
LOC100291624          0.049   PREDICTED: hypothetical protein XP_002345876 
LOC100289712          0.049   PREDICTED: hypothetical protein XP_002346761 
LOC100287455          0.049   PREDICTED: hypothetical protein XP_002342583 
BBC3                  0.049   BCL2 binding component 3 isoform 1 
CECR6                 0.044   cat eye syndrome chromosome region, candidate 6 isof...
LOC100290372          0.044   PREDICTED: hypothetical protein XP_002346788 
LOC100288606          0.044   PREDICTED: hypothetical protein XP_002342652 
LOC100131102          0.044   PREDICTED: hypothetical protein 
PRR12                 0.044   proline rich 12 
LOC729570             0.040   PREDICTED: hypothetical protein 
LOC729570             0.040   PREDICTED: hypothetical protein 
LOC729570             0.040   PREDICTED: hypothetical protein 
LOC100293662          0.040   PREDICTED: hypothetical protein 
SRRM2                 0.037   splicing coactivator subunit SRm300 
LOC100291096          0.035   PREDICTED: hypothetical protein XP_002346952 
LOC100290265          0.035   PREDICTED: hypothetical protein XP_002346787 
LOC100133305          0.035   PREDICTED: hypothetical protein 
LOC100133305          0.035   PREDICTED: hypothetical protein 
FLJ37078              0.035   hypothetical protein LOC222183 
C7orf51               0.035   hypothetical protein FLJ37538 
LOC339192             0.033   PREDICTED: hypothetical protein 
LOC339192             0.033   PREDICTED: hypothetical protein 
FLJ22184              0.033   PREDICTED: hypothetical protein FLJ22184 
LOC100127891          0.033   PREDICTED: hypothetical protein 
LOC100291634          0.033   PREDICTED: hypothetical protein XP_002346062 
FLJ22184              0.033   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.033   PREDICTED: hypothetical protein LOC80164 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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