Guide to the Human Genome
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Name: LOC284801 Sequence: fasta or formatted (228aa) NCBI GI: 89057843
Description:

PREDICTED: hypothetical protein LOC284801

Not currently referenced in the text

Other entries for this name:
alt mRNA {228aa} PREDICTED: hypothetical protein LOC284801
alt mRNA {228aa} PREDICTED: hypothetical protein LOC284801
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.4         26           2
 C cysteine            2.2          5           1
 D aspartate           3.1          7           1
 E glutamate           3.5          8           1
 F phenylalanine       2.2          5           1
 G glycine            12.3         28           2
 H histidine           1.3          3           1
 I isoleucine          0.4          1           1
 K lysine              1.8          4           2
 L leucine            10.1         23           2
 M methionine          0.9          2           1
 N asparagine          0.4          1           1
 P proline            13.2         30           4
 Q glutamine           1.8          4           1
 R arginine           14.5         33           3
 S serine              7.5         17           2
 T threonine           2.6          6           1
 V valine              8.8         20           2
 W tryptophan          2.2          5           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC284801 
LOC284801             1.000   PREDICTED: hypothetical protein LOC284801 
LOC284801             1.000   PREDICTED: hypothetical protein LOC284801 
TTC19                 0.034   tetratricopeptide repeat domain 19 
UNCX                  0.034   UNC homeobox 
COL11A2               0.031   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.031   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.031   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL22A1               0.029   collagen, type XXII, alpha 1 
COL1A2                0.029   alpha 2 type I collagen 
LOC100292553          0.027   PREDICTED: hypothetical protein 
LOC100289168          0.027   PREDICTED: hypothetical protein XP_002343025 
SYNJ1                 0.027   synaptojanin 1 isoform c 
LOC100289721          0.027   PREDICTED: hypothetical protein XP_002347280 
RNF19B                0.027   ring finger protein 19B isoform a 
RNF19B                0.027   ring finger protein 19B isoform b 
LOC100287994          0.025   PREDICTED: hypothetical protein 
LOC100287994          0.025   PREDICTED: hypothetical protein XP_002342988 
SYNJ1                 0.022   synaptojanin 1 isoform a 
SYNJ1                 0.022   synaptojanin 1 isoform b 
HDAC7                 0.022   histone deacetylase 7 isoform d 
HDAC7                 0.022   histone deacetylase 7 isoform a 
LOC100291908          0.022   PREDICTED: hypothetical protein XP_002345432 
LOC283999             0.020   hypothetical protein LOC283999 
COL5A2                0.020   alpha 2 type V collagen preproprotein 
LOC100293604          0.020   PREDICTED: hypothetical protein 
LOC100287837          0.020   PREDICTED: hypothetical protein XP_002343157 
TP53I13               0.020   tumor protein p53 inducible protein 13 
KLF16                 0.020   BTE-binding protein 4 
LOC100292934          0.020   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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