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Search of human proteins with 89038281
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|89038281 PREDICTED: similar to U2 small nuclear RNA
auxillary factor 1 [Homo sapiens]
(243 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|89038281 PREDICTED: similar to U2 small nuclear RNA auxillary... 520 e-148
gi|89038927 PREDICTED: similar to U2 small nuclear RNA auxillary... 517 e-147
gi|5803207 U2 small nuclear RNA auxillary factor 1 isoform a [Ho... 427 e-120
gi|68800128 U2 small nuclear RNA auxillary factor 1 isoform b [H... 416 e-117
gi|68800138 U2 small nuclear RNA auxillary factor 1 isoform c [H... 310 6e-85
gi|94536809 U2 small nuclear RNA auxiliary factor 1-like 4 isofo... 234 4e-62
gi|94536807 U2 small nuclear RNA auxiliary factor 1-like 4 isofo... 150 1e-36
gi|4827046 U2 small nuclear RNA auxiliary factor 1-like 2 [Homo ... 105 4e-23
gi|9558733 transformer-2 alpha [Homo sapiens] 45 6e-05
gi|7710145 methyl-CpG binding domain protein 2 testis-specific i... 45 7e-05
gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo s... 45 7e-05
gi|109452587 family with sequence similarity 98, member B isofor... 44 1e-04
gi|5032007 purine-rich element binding protein A [Homo sapiens] 43 3e-04
gi|38683807 ankyrin repeat domain protein 17 isoform a [Homo sap... 42 4e-04
gi|38683816 ankyrin repeat domain protein 17 isoform b [Homo sap... 42 4e-04
gi|21322252 androgen receptor isoform 1 [Homo sapiens] 42 5e-04
gi|4502565 calpain, small subunit 1 [Homo sapiens] 42 5e-04
gi|51599151 calpain, small subunit 1 [Homo sapiens] 42 5e-04
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 42 5e-04
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 42 5e-04
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 42 5e-04
gi|12056465 fibrillarin [Homo sapiens] 42 6e-04
gi|30179900 SRY (sex determining region Y)-box 1 [Homo sapiens] 42 6e-04
gi|52632383 heterogeneous nuclear ribonucleoprotein L isoform a ... 41 8e-04
gi|51702521 POU domain, class 3, transcription factor 2 [Homo sa... 41 8e-04
gi|13994190 frizzled 8 [Homo sapiens] 41 8e-04
gi|5453936 POU class 3 homeobox 3 [Homo sapiens] 41 8e-04
gi|110347449 POU domain, class 4, transcription factor 1 [Homo s... 41 8e-04
gi|89145413 short stature homeobox 2 isoform a [Homo sapiens] 41 0.001
gi|167830436 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 2... 41 0.001
>gi|89038281 PREDICTED: similar to U2 small nuclear RNA auxillary
factor 1 [Homo sapiens]
Length = 243
Score = 520 bits (1338), Expect = e-148
Identities = 243/243 (100%), Positives = 243/243 (100%)
Query: 1 MAECPASIFGTEKVNCSFDFKIGACLHGDRCSWLHHKPTFSQTIALLNIYCNPQNASQSA 60
MAECPASIFGTEKVNCSFDFKIGACLHGDRCSWLHHKPTFSQTIALLNIYCNPQNASQSA
Sbjct: 1 MAECPASIFGTEKVNCSFDFKIGACLHGDRCSWLHHKPTFSQTIALLNIYCNPQNASQSA 60
Query: 61 DGLRCALSDVEVQEHSDEFFEEVFIELGEKYGEVEEMNVCDNLGDHLVGNVYFKLPREED 120
DGLRCALSDVEVQEHSDEFFEEVFIELGEKYGEVEEMNVCDNLGDHLVGNVYFKLPREED
Sbjct: 61 DGLRCALSDVEVQEHSDEFFEEVFIELGEKYGEVEEMNVCDNLGDHLVGNVYFKLPREED 120
Query: 121 AEKAVIDLNNRWFNGQPIHAELSPVTDFRGACCRQYEMGECTRGGFCNFMHLKPISRELR 180
AEKAVIDLNNRWFNGQPIHAELSPVTDFRGACCRQYEMGECTRGGFCNFMHLKPISRELR
Sbjct: 121 AEKAVIDLNNRWFNGQPIHAELSPVTDFRGACCRQYEMGECTRGGFCNFMHLKPISRELR 180
Query: 181 RELCGQRRKKHRSRSRSRERHSRSGDRGHGDGGGGGGGGGPGGGGGRERDRRRLRDRERS 240
RELCGQRRKKHRSRSRSRERHSRSGDRGHGDGGGGGGGGGPGGGGGRERDRRRLRDRERS
Sbjct: 181 RELCGQRRKKHRSRSRSRERHSRSGDRGHGDGGGGGGGGGPGGGGGRERDRRRLRDRERS 240
Query: 241 GRF 243
GRF
Sbjct: 241 GRF 243
>gi|89038927 PREDICTED: similar to U2 small nuclear RNA auxillary
factor 1 [Homo sapiens]
Length = 243
Score = 517 bits (1332), Expect = e-147
Identities = 242/243 (99%), Positives = 242/243 (99%)
Query: 1 MAECPASIFGTEKVNCSFDFKIGACLHGDRCSWLHHKPTFSQTIALLNIYCNPQNASQSA 60
MAECPASIFGTEKVNCSFDFKIGACLHGDRCSWLHHKPTFSQTIALLNIYCNPQNASQSA
Sbjct: 1 MAECPASIFGTEKVNCSFDFKIGACLHGDRCSWLHHKPTFSQTIALLNIYCNPQNASQSA 60
Query: 61 DGLRCALSDVEVQEHSDEFFEEVFIELGEKYGEVEEMNVCDNLGDHLVGNVYFKLPREED 120
DGLRCALSDVEVQEH DEFFEEVFIELGEKYGEVEEMNVCDNLGDHLVGNVYFKLPREED
Sbjct: 61 DGLRCALSDVEVQEHYDEFFEEVFIELGEKYGEVEEMNVCDNLGDHLVGNVYFKLPREED 120
Query: 121 AEKAVIDLNNRWFNGQPIHAELSPVTDFRGACCRQYEMGECTRGGFCNFMHLKPISRELR 180
AEKAVIDLNNRWFNGQPIHAELSPVTDFRGACCRQYEMGECTRGGFCNFMHLKPISRELR
Sbjct: 121 AEKAVIDLNNRWFNGQPIHAELSPVTDFRGACCRQYEMGECTRGGFCNFMHLKPISRELR 180
Query: 181 RELCGQRRKKHRSRSRSRERHSRSGDRGHGDGGGGGGGGGPGGGGGRERDRRRLRDRERS 240
RELCGQRRKKHRSRSRSRERHSRSGDRGHGDGGGGGGGGGPGGGGGRERDRRRLRDRERS
Sbjct: 181 RELCGQRRKKHRSRSRSRERHSRSGDRGHGDGGGGGGGGGPGGGGGRERDRRRLRDRERS 240
Query: 241 GRF 243
GRF
Sbjct: 241 GRF 243
>gi|5803207 U2 small nuclear RNA auxillary factor 1 isoform a [Homo
sapiens]
Length = 240
Score = 427 bits (1099), Expect = e-120
Identities = 213/245 (86%), Positives = 219/245 (89%), Gaps = 7/245 (2%)
Query: 1 MAECPASIFGTEK--VNCSFDFKIGACLHGDRCSWLHHKPTFSQTIALLNIYCNPQNASQ 58
MAE ASIFGTEK VNCSF FKIGAC HGDRCS LH+KPTFSQTIALLNIY NPQN+SQ
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQ 60
Query: 59 SADGLRCALSDVEVQEHSDEFFEEVFIELGEKYGEVEEMNVCDNLGDHLVGNVYFKLPRE 118
SADGLRCA+SDVE+QEH DEFFEEVF E+ EKYGEVEEMNVCDNLGDHLVGNVY K RE
Sbjct: 61 SADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE 120
Query: 119 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFRGACCRQYEMGECTRGGFCNFMHLKPISRE 178
EDAEKAVIDLNNRWFNGQPIHAELSPVTDFR ACCRQYEMGECTRGGFCNFMHLKPISRE
Sbjct: 121 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE 180
Query: 179 LRRELCGQRRKKHRSRSRSRERHSRSGDRGHGDGGGGGGGGGPGGGGGRERDRRRLRDRE 238
LRREL G+RRKKHRSRSRSRER SRS DRG G GGGGG GGGGGRERDRRR RDRE
Sbjct: 181 LRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGG-----GGGGGRERDRRRSRDRE 235
Query: 239 RSGRF 243
RSGRF
Sbjct: 236 RSGRF 240
>gi|68800128 U2 small nuclear RNA auxillary factor 1 isoform b [Homo
sapiens]
Length = 240
Score = 416 bits (1069), Expect = e-117
Identities = 206/245 (84%), Positives = 215/245 (87%), Gaps = 7/245 (2%)
Query: 1 MAECPASIFGTEK--VNCSFDFKIGACLHGDRCSWLHHKPTFSQTIALLNIYCNPQNASQ 58
MAE ASIFGTEK VNCSF FKIGAC HGDRCS LH+KPTFSQTI + NIY NPQN++Q
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTILIQNIYRNPQNSAQ 60
Query: 59 SADGLRCALSDVEVQEHSDEFFEEVFIELGEKYGEVEEMNVCDNLGDHLVGNVYFKLPRE 118
+ADG CA+SDVE+QEH DEFFEEVF E+ EKYGEVEEMNVCDNLGDHLVGNVY K RE
Sbjct: 61 TADGSHCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE 120
Query: 119 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFRGACCRQYEMGECTRGGFCNFMHLKPISRE 178
EDAEKAVIDLNNRWFNGQPIHAELSPVTDFR ACCRQYEMGECTRGGFCNFMHLKPISRE
Sbjct: 121 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE 180
Query: 179 LRRELCGQRRKKHRSRSRSRERHSRSGDRGHGDGGGGGGGGGPGGGGGRERDRRRLRDRE 238
LRREL G+RRKKHRSRSRSRER SRS DRG G GGGGG GGGGGRERDRRR RDRE
Sbjct: 181 LRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGG-----GGGGGRERDRRRSRDRE 235
Query: 239 RSGRF 243
RSGRF
Sbjct: 236 RSGRF 240
>gi|68800138 U2 small nuclear RNA auxillary factor 1 isoform c [Homo
sapiens]
Length = 167
Score = 310 bits (795), Expect = 6e-85
Identities = 151/172 (87%), Positives = 154/172 (89%), Gaps = 5/172 (2%)
Query: 72 VQEHSDEFFEEVFIELGEKYGEVEEMNVCDNLGDHLVGNVYFKLPREEDAEKAVIDLNNR 131
+QEH DEFFEEVF E+ EKYGEVEEMNVCDNLGDHLVGNVY K REEDAEKAVIDLNNR
Sbjct: 1 MQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNR 60
Query: 132 WFNGQPIHAELSPVTDFRGACCRQYEMGECTRGGFCNFMHLKPISRELRRELCGQRRKKH 191
WFNGQPIHAELSPVTDFR ACCRQYEMGECTRGGFCNFMHLKPISRELRREL G+RRKKH
Sbjct: 61 WFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELYGRRRKKH 120
Query: 192 RSRSRSRERHSRSGDRGHGDGGGGGGGGGPGGGGGRERDRRRLRDRERSGRF 243
RSRSRSRER SRS DRG G GGGGG GGGGGRERDRRR RDRERSGRF
Sbjct: 121 RSRSRSRERRSRSRDRGRGGGGGGG-----GGGGGRERDRRRSRDRERSGRF 167
>gi|94536809 U2 small nuclear RNA auxiliary factor 1-like 4 isoform
1 [Homo sapiens]
Length = 181
Score = 234 bits (598), Expect = 4e-62
Identities = 129/219 (58%), Positives = 142/219 (64%), Gaps = 49/219 (22%)
Query: 1 MAECPASIFGTEK--VNCSFDFKIGACLHGDRCSWLHHKPTFSQTIALLNIYCNPQNASQ 58
MAE ASIFGTEK VNCSF FKIG C HGDRCS LH+KPTFSQ
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQ---------------- 44
Query: 59 SADGLRCALSDVEVQEHSDEFFEEVFIELGEKYGEVEEMNVCDNLGDHLVGNVYFKLPRE 118
EVF EL EKYGE+EEMNVCDNLGDHLVGNVY K RE
Sbjct: 45 -----------------------EVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRRE 81
Query: 119 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFRGACCRQYEMGECTRGGFCNFMHLKPISRE 178
ED E+AV +L+NRWFNGQ +H ELSPVTDFR +CCRQYEMGECTRGGFCNFMHL+PIS+
Sbjct: 82 EDGERAVAELSNRWFNGQAVHGELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISQN 141
Query: 179 LRRELCGQRRKKHRSRSR------SRERHSR-SGDRGHG 210
L+R+L G R + RS R RER+ R S D HG
Sbjct: 142 LQRQLYG-RGPRRRSPPRFHTGHHPRERNHRCSPDHWHG 179
>gi|94536807 U2 small nuclear RNA auxiliary factor 1-like 4 isoform
2 [Homo sapiens]
Length = 202
Score = 150 bits (379), Expect = 1e-36
Identities = 82/155 (52%), Positives = 89/155 (57%), Gaps = 41/155 (26%)
Query: 1 MAECPASIFGTEK--VNCSFDFKIGACLHGDRCSWLHHKPTFSQTIALLNIYCNPQNASQ 58
MAE ASIFGTEK VNCSF FKIG C HGDRCS LH+KPTFSQ
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQ---------------- 44
Query: 59 SADGLRCALSDVEVQEHSDEFFEEVFIELGEKYGEVEEMNVCDNLGDHLVGNVYFKLPRE 118
EVF EL EKYGE+EEMNVCDNLGDHLVGNVY K RE
Sbjct: 45 -----------------------EVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRRE 81
Query: 119 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFRGACC 153
ED E+AV +L+NRWFNGQ +H + V C
Sbjct: 82 EDGERAVAELSNRWFNGQAVHGNVPEVASATSCIC 116
>gi|4827046 U2 small nuclear RNA auxiliary factor 1-like 2 [Homo
sapiens]
Length = 482
Score = 105 bits (262), Expect = 4e-23
Identities = 66/211 (31%), Positives = 102/211 (48%), Gaps = 18/211 (8%)
Query: 12 EKVNCSFDFKIGACLHGDRCSWLHHKPTFSQTIALLNIY-------CNPQNASQSADGLR 64
++ NC F K GAC GDRCS H+ PT S T+ + +++ C + A
Sbjct: 168 DRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMFTTFGMEQCRRDDYDPDAS--- 224
Query: 65 CALSDVEVQEHSDEFFEEVFIELGEKYGEVEEMNVCDNLGDHLVGNVYFKLPREEDAEKA 124
S+ E + +F+E+V E + G+V + V NL HL GNVY + EE+ + A
Sbjct: 225 LEYSEEETYQQFLDFYEDVLPEF-KNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAA 283
Query: 125 VIDLNNRWFNGQPIHAELSPVTDFRGACCRQYEMGECTRGGFCNFMHLKPISRELRRELC 184
+ N RW+ G+ + E PVT ++ A C +E+ +C RG CNF+H + R E
Sbjct: 284 LSLFNGRWYAGRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLH---VFRNPNNEFW 340
Query: 185 GQRRKKHRSRSRSRERHSRSGDR----GHGD 211
R + S R+ ++ +R GH D
Sbjct: 341 EANRDIYLSPDRTGSSFGKNSERRERMGHHD 371
Score = 30.4 bits (67), Expect = 1.5
Identities = 17/53 (32%), Positives = 23/53 (43%)
Query: 188 RKKHRSRSRSRERHSRSGDRGHGDGGGGGGGGGPGGGGGRERDRRRLRDRERS 240
+K H+ S+SRERH+ + D G R R RR R R +S
Sbjct: 405 KKSHKRTSKSRERHNSRSRGRNRDRSRDRSRGRGSRSRSRSRSRRSRRSRSQS 457
>gi|9558733 transformer-2 alpha [Homo sapiens]
Length = 282
Score = 45.1 bits (105), Expect = 6e-05
Identities = 18/22 (81%), Positives = 18/22 (81%)
Query: 209 HGDGGGGGGGGGPGGGGGRERD 230
H GGGGGGGGG GGGGGR RD
Sbjct: 214 HSGGGGGGGGGGGGGGGGRRRD 235
Score = 37.4 bits (85), Expect = 0.012
Identities = 17/25 (68%), Positives = 17/25 (68%)
Query: 213 GGGGGGGGPGGGGGRERDRRRLRDR 237
GGGGGGGG GGGGG R R DR
Sbjct: 216 GGGGGGGGGGGGGGGGRRRDSYYDR 240
Score = 33.1 bits (74), Expect = 0.22
Identities = 14/21 (66%), Positives = 15/21 (71%)
Query: 200 RHSRSGDRGHGDGGGGGGGGG 220
R + SG G G GGGGGGGGG
Sbjct: 211 RPTHSGGGGGGGGGGGGGGGG 231
>gi|7710145 methyl-CpG binding domain protein 2 testis-specific
isoform [Homo sapiens]
Length = 302
Score = 44.7 bits (104), Expect = 7e-05
Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 183 LCGQRRKKHRSRSRSRER-----HSRSGDRGHGDGGGGGGGGGPGGGGGRERD 230
+CG+ R + R R R R R SG G G GGG GGGG GGGG R+
Sbjct: 73 VCGRGRGRGRGRGRGRGRGRGRGRPPSGGSGLGGDGGGCGGGGSGGGGAPRRE 125
>gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo
sapiens]
Length = 411
Score = 44.7 bits (104), Expect = 7e-05
Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 183 LCGQRRKKHRSRSRSRER-----HSRSGDRGHGDGGGGGGGGGPGGGGGRERD 230
+CG+ R + R R R R R SG G G GGG GGGG GGGG R+
Sbjct: 73 VCGRGRGRGRGRGRGRGRGRGRGRPPSGGSGLGGDGGGCGGGGSGGGGAPRRE 125
>gi|109452587 family with sequence similarity 98, member B isoform 1
[Homo sapiens]
Length = 433
Score = 43.9 bits (102), Expect = 1e-04
Identities = 20/27 (74%), Positives = 21/27 (77%), Gaps = 2/27 (7%)
Query: 205 GDRGHGD--GGGGGGGGGPGGGGGRER 229
G RG+GD GGGGGGGGG GGGGG R
Sbjct: 406 GGRGYGDPYGGGGGGGGGGGGGGGYRR 432
Score = 39.7 bits (91), Expect = 0.002
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 198 RERHSRSGDRGHGDGGGGGGGGGPGGGGGR 227
+ + G G G GGGGGG GG GGGGGR
Sbjct: 327 KRQEGGGGRGGWGGGGGGGGRGGGGGGGGR 356
Score = 39.7 bits (91), Expect = 0.002
Identities = 17/23 (73%), Positives = 17/23 (73%)
Query: 205 GDRGHGDGGGGGGGGGPGGGGGR 227
G G G GGGGGGG G GGGGGR
Sbjct: 362 GGGGWGGGGGGGGGWGGGGGGGR 384
Score = 39.3 bits (90), Expect = 0.003
Identities = 18/25 (72%), Positives = 18/25 (72%)
Query: 205 GDRGHGDGGGGGGGGGPGGGGGRER 229
G G G GGGGGGGGG GGGGG R
Sbjct: 360 GGGGGGWGGGGGGGGGWGGGGGGGR 384
Score = 37.7 bits (86), Expect = 0.009
Identities = 16/22 (72%), Positives = 16/22 (72%)
Query: 205 GDRGHGDGGGGGGGGGPGGGGG 226
G G G GGGGGG GG GGGGG
Sbjct: 343 GGGGRGGGGGGGGRGGWGGGGG 364
Score = 37.4 bits (85), Expect = 0.012
Identities = 16/22 (72%), Positives = 16/22 (72%)
Query: 205 GDRGHGDGGGGGGGGGPGGGGG 226
G RG GGGGG GGG GGGGG
Sbjct: 354 GGRGGWGGGGGGWGGGGGGGGG 375
Score = 36.6 bits (83), Expect = 0.020
Identities = 18/27 (66%), Positives = 18/27 (66%), Gaps = 5/27 (18%)
Query: 205 GDRGHGDGGG-----GGGGGGPGGGGG 226
G RG G GGG GGGGGG GGGGG
Sbjct: 345 GGRGGGGGGGGRGGWGGGGGGWGGGGG 371
Score = 35.8 bits (81), Expect = 0.035
Identities = 16/27 (59%), Positives = 16/27 (59%)
Query: 200 RHSRSGDRGHGDGGGGGGGGGPGGGGG 226
R G G G GGGGGG G GGGGG
Sbjct: 347 RGGGGGGGGRGGWGGGGGGWGGGGGGG 373
Score = 35.4 bits (80), Expect = 0.045
Identities = 16/24 (66%), Positives = 16/24 (66%)
Query: 203 RSGDRGHGDGGGGGGGGGPGGGGG 226
R G G G GGG GGGGG GG GG
Sbjct: 335 RGGWGGGGGGGGRGGGGGGGGRGG 358
Score = 35.4 bits (80), Expect = 0.045
Identities = 16/24 (66%), Positives = 16/24 (66%)
Query: 203 RSGDRGHGDGGGGGGGGGPGGGGG 226
R G G G G GGGGGGG G GGG
Sbjct: 356 RGGWGGGGGGWGGGGGGGGGWGGG 379
Score = 35.0 bits (79), Expect = 0.059
Identities = 16/25 (64%), Positives = 17/25 (68%)
Query: 203 RSGDRGHGDGGGGGGGGGPGGGGGR 227
R G +G GD GG GG GG GG GGR
Sbjct: 384 RGGFQGRGDYGGRGGYGGRGGYGGR 408
Score = 34.7 bits (78), Expect = 0.077
Identities = 15/22 (68%), Positives = 15/22 (68%)
Query: 205 GDRGHGDGGGGGGGGGPGGGGG 226
G G G GGGGGGGG GG GG
Sbjct: 340 GGGGGGGRGGGGGGGGRGGWGG 361
Score = 34.3 bits (77), Expect = 0.10
Identities = 15/22 (68%), Positives = 15/22 (68%)
Query: 205 GDRGHGDGGGGGGGGGPGGGGG 226
G G G GGGGG GGG GGG G
Sbjct: 364 GGWGGGGGGGGGWGGGGGGGRG 385
Score = 33.5 bits (75), Expect = 0.17
Identities = 14/19 (73%), Positives = 14/19 (73%)
Query: 208 GHGDGGGGGGGGGPGGGGG 226
G G GGGG GGGG GG GG
Sbjct: 368 GGGGGGGGWGGGGGGGRGG 386
Score = 33.1 bits (74), Expect = 0.22
Identities = 15/23 (65%), Positives = 15/23 (65%)
Query: 205 GDRGHGDGGGGGGGGGPGGGGGR 227
G G G G GGGGGGG GG GR
Sbjct: 368 GGGGGGGGWGGGGGGGRGGFQGR 390
Score = 31.6 bits (70), Expect = 0.65
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 208 GHGDGGGGGGGGGPGGGGGRER 229
G G GGG GGGGG G GG + R
Sbjct: 369 GGGGGGGWGGGGGGGRGGFQGR 390
Score = 30.0 bits (66), Expect = 1.9
Identities = 13/20 (65%), Positives = 13/20 (65%)
Query: 205 GDRGHGDGGGGGGGGGPGGG 224
G G G GG GGGGGG GG
Sbjct: 367 GGGGGGGGGWGGGGGGGRGG 386
Score = 30.0 bits (66), Expect = 1.9
Identities = 17/33 (51%), Positives = 17/33 (51%), Gaps = 10/33 (30%)
Query: 205 GDRGHGDGGGGGGG----------GGPGGGGGR 227
G G G GGGGGGG GG GG GGR
Sbjct: 370 GGGGGGWGGGGGGGRGGFQGRGDYGGRGGYGGR 402
>gi|5032007 purine-rich element binding protein A [Homo sapiens]
Length = 322
Score = 42.7 bits (99), Expect = 3e-04
Identities = 18/26 (69%), Positives = 18/26 (69%)
Query: 201 HSRSGDRGHGDGGGGGGGGGPGGGGG 226
H SG G GGGGGGGGG GGGGG
Sbjct: 23 HPGSGSGSGGGGGGGGGGGGSGGGGG 48
Score = 38.9 bits (89), Expect = 0.004
Identities = 17/24 (70%), Positives = 17/24 (70%)
Query: 202 SRSGDRGHGDGGGGGGGGGPGGGG 225
S SG G G GGGGGGG G GGGG
Sbjct: 26 SGSGSGGGGGGGGGGGGSGGGGGG 49
Score = 37.0 bits (84), Expect = 0.016
Identities = 15/21 (71%), Positives = 15/21 (71%)
Query: 205 GDRGHGDGGGGGGGGGPGGGG 225
G G G G GGGGGGG GGGG
Sbjct: 22 GHPGSGSGSGGGGGGGGGGGG 42
Score = 36.6 bits (83), Expect = 0.020
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 202 SRSGDRGHGDGGGGGGGGGPGGG-GGRERDRRRLRDR 237
S SG G G GGGGG GGG GG GG + + + L +
Sbjct: 28 SGSGGGGGGGGGGGGSGGGGGGAPGGLQHETQELASK 64
Score = 35.0 bits (79), Expect = 0.059
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 205 GDRGHGDGGGGGGGGGPGGGGG 226
G GH G G GGGG GGGGG
Sbjct: 19 GSLGHPGSGSGSGGGGGGGGGG 40
Score = 28.9 bits (63), Expect = 4.2
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 198 RERHSRSGDRGHGDGG-----GGGGGGGPGGGGG 226
R+ S G G GG G G G G GGGGG
Sbjct: 4 RDSGSEQGGAALGSGGSLGHPGSGSGSGGGGGGG 37
>gi|38683807 ankyrin repeat domain protein 17 isoform a [Homo
sapiens]
Length = 2603
Score = 42.4 bits (98), Expect = 4e-04
Identities = 20/41 (48%), Positives = 22/41 (53%)
Query: 186 QRRKKHRSRSRSRERHSRSGDRGHGDGGGGGGGGGPGGGGG 226
Q K R+R+ S S GGGGGGGGG GGGGG
Sbjct: 70 QHHKAKRNRTCRPPSSSESSSDSDNSGGGGGGGGGGGGGGG 110
Score = 38.1 bits (87), Expect = 0.007
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 186 QRRKKHRSRSRSRERHSRSGDRGHGDGGGGGGGGGPGGGGG 226
Q++ R+R+ S S D GGGGGGG GGGGG
Sbjct: 68 QQQHHKAKRNRTCRPPSSSESSSDSDNSGGGGGGGGGGGGG 108
Score = 37.4 bits (85), Expect = 0.012
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 188 RKKHRSRSRSRERHSRSGDRGHGDG---GGGGGGGGPGGGGG 226
+++H R+R S D GGGGGGGG GGGGG
Sbjct: 68 QQQHHKAKRNRTCRPPSSSESSSDSDNSGGGGGGGGGGGGGG 109
Score = 37.4 bits (85), Expect = 0.012
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 187 RRKKHRS-RSRSRERHSRSGDRGHGDGGGGGGGGGPGGGGGRERDRRRLRDRE 238
+ K++R+ R S S D G GGGGGGGGG GG + D E
Sbjct: 73 KAKRNRTCRPPSSSESSSDSDNSGGGGGGGGGGGGGGGTSSNNSEEEEDDDDE 125
Score = 35.0 bits (79), Expect = 0.059
Identities = 20/64 (31%), Positives = 26/64 (40%)
Query: 167 CNFMHLKPISRELRRELCGQRRKKHRSRSRSRERHSRSGDRGHGDGGGGGGGGGPGGGGG 226
C+ + K ++ + R + S S S SG G G GGGGGGGG
Sbjct: 58 CDLLLKKKPPQQQHHKAKRNRTCRPPSSSESSSDSDNSGGGGGGGGGGGGGGGTSSNNSE 117
Query: 227 RERD 230
E D
Sbjct: 118 EEED 121
>gi|38683816 ankyrin repeat domain protein 17 isoform b [Homo
sapiens]
Length = 2352
Score = 42.4 bits (98), Expect = 4e-04
Identities = 20/41 (48%), Positives = 22/41 (53%)
Query: 186 QRRKKHRSRSRSRERHSRSGDRGHGDGGGGGGGGGPGGGGG 226
Q K R+R+ S S GGGGGGGGG GGGGG
Sbjct: 70 QHHKAKRNRTCRPPSSSESSSDSDNSGGGGGGGGGGGGGGG 110
Score = 38.1 bits (87), Expect = 0.007
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 186 QRRKKHRSRSRSRERHSRSGDRGHGDGGGGGGGGGPGGGGG 226
Q++ R+R+ S S D GGGGGGG GGGGG
Sbjct: 68 QQQHHKAKRNRTCRPPSSSESSSDSDNSGGGGGGGGGGGGG 108
Score = 37.4 bits (85), Expect = 0.012
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 188 RKKHRSRSRSRERHSRSGDRGHGDG---GGGGGGGGPGGGGG 226
+++H R+R S D GGGGGGGG GGGGG
Sbjct: 68 QQQHHKAKRNRTCRPPSSSESSSDSDNSGGGGGGGGGGGGGG 109
Score = 37.4 bits (85), Expect = 0.012
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 187 RRKKHRS-RSRSRERHSRSGDRGHGDGGGGGGGGGPGGGGGRERDRRRLRDRE 238
+ K++R+ R S S D G GGGGGGGGG GG + D E
Sbjct: 73 KAKRNRTCRPPSSSESSSDSDNSGGGGGGGGGGGGGGGTSSNNSEEEEDDDDE 125
Score = 35.0 bits (79), Expect = 0.059
Identities = 20/64 (31%), Positives = 26/64 (40%)
Query: 167 CNFMHLKPISRELRRELCGQRRKKHRSRSRSRERHSRSGDRGHGDGGGGGGGGGPGGGGG 226
C+ + K ++ + R + S S S SG G G GGGGGGGG
Sbjct: 58 CDLLLKKKPPQQQHHKAKRNRTCRPPSSSESSSDSDNSGGGGGGGGGGGGGGGTSSNNSE 117
Query: 227 RERD 230
E D
Sbjct: 118 EEED 121
>gi|21322252 androgen receptor isoform 1 [Homo sapiens]
Length = 920
Score = 42.0 bits (97), Expect = 5e-04
Identities = 18/24 (75%), Positives = 18/24 (75%)
Query: 205 GDRGHGDGGGGGGGGGPGGGGGRE 228
G G G GGGGGGGGG GGGGG E
Sbjct: 451 GGGGGGGGGGGGGGGGGGGGGGGE 474
Score = 40.4 bits (93), Expect = 0.001
Identities = 17/22 (77%), Positives = 17/22 (77%)
Query: 205 GDRGHGDGGGGGGGGGPGGGGG 226
G G G GGGGGGGGG GGGGG
Sbjct: 448 GPCGGGGGGGGGGGGGGGGGGG 469
Score = 35.4 bits (80), Expect = 0.045
Identities = 14/18 (77%), Positives = 15/18 (83%)
Query: 209 HGDGGGGGGGGGPGGGGG 226
+G GGGGGGGG GGGGG
Sbjct: 447 YGPCGGGGGGGGGGGGGG 464
Score = 35.4 bits (80), Expect = 0.045
Identities = 15/22 (68%), Positives = 15/22 (68%)
Query: 205 GDRGHGDGGGGGGGGGPGGGGG 226
G G G GGGGGGGGG GG G
Sbjct: 455 GGGGGGGGGGGGGGGGGGGEAG 476
Score = 30.4 bits (67), Expect = 1.5
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 204 SGDRGHGDGGGGGGGGGPGGGGG 226
+ + G G GGGGGG GGGGG
Sbjct: 440 TAEEGQLYGPCGGGGGGGGGGGG 462
>gi|4502565 calpain, small subunit 1 [Homo sapiens]
Length = 268
Score = 42.0 bits (97), Expect = 5e-04
Identities = 18/23 (78%), Positives = 18/23 (78%)
Query: 204 SGDRGHGDGGGGGGGGGPGGGGG 226
SG G G GGGGGGGGG GGGGG
Sbjct: 34 SGAGGGGGGGGGGGGGGGGGGGG 56
Score = 37.4 bits (85), Expect = 0.012
Identities = 16/23 (69%), Positives = 17/23 (73%)
Query: 202 SRSGDRGHGDGGGGGGGGGPGGG 224
S +G G G GGGGGGGGG GGG
Sbjct: 34 SGAGGGGGGGGGGGGGGGGGGGG 56
Score = 33.9 bits (76), Expect = 0.13
Identities = 14/17 (82%), Positives = 14/17 (82%)
Query: 210 GDGGGGGGGGGPGGGGG 226
G GGGGGGGGG GGG G
Sbjct: 10 GGGGGGGGGGGLGGGLG 26
Score = 31.2 bits (69), Expect = 0.85
Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 16/40 (40%)
Query: 203 RSGDRGHGDGGG----------------GGGGGGPGGGGG 226
+ G G G GGG GGGGGG GGGGG
Sbjct: 9 KGGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGGGGGG 48
>gi|51599151 calpain, small subunit 1 [Homo sapiens]
Length = 268
Score = 42.0 bits (97), Expect = 5e-04
Identities = 18/23 (78%), Positives = 18/23 (78%)
Query: 204 SGDRGHGDGGGGGGGGGPGGGGG 226
SG G G GGGGGGGGG GGGGG
Sbjct: 34 SGAGGGGGGGGGGGGGGGGGGGG 56
Score = 37.4 bits (85), Expect = 0.012
Identities = 16/23 (69%), Positives = 17/23 (73%)
Query: 202 SRSGDRGHGDGGGGGGGGGPGGG 224
S +G G G GGGGGGGGG GGG
Sbjct: 34 SGAGGGGGGGGGGGGGGGGGGGG 56
Score = 33.9 bits (76), Expect = 0.13
Identities = 14/17 (82%), Positives = 14/17 (82%)
Query: 210 GDGGGGGGGGGPGGGGG 226
G GGGGGGGGG GGG G
Sbjct: 10 GGGGGGGGGGGLGGGLG 26
Score = 31.2 bits (69), Expect = 0.85
Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 16/40 (40%)
Query: 203 RSGDRGHGDGGG----------------GGGGGGPGGGGG 226
+ G G G GGG GGGGGG GGGGG
Sbjct: 9 KGGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGGGGGG 48
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 42.0 bits (97), Expect = 5e-04
Identities = 18/26 (69%), Positives = 19/26 (73%)
Query: 201 HSRSGDRGHGDGGGGGGGGGPGGGGG 226
+SR G G G GGGGGGGG GGGGG
Sbjct: 243 YSRPGAGGGGGGGGGGGGGSGGGGGG 268
Score = 38.9 bits (89), Expect = 0.004
Identities = 16/23 (69%), Positives = 17/23 (73%)
Query: 204 SGDRGHGDGGGGGGGGGPGGGGG 226
+G G G GGGGGG GG GGGGG
Sbjct: 248 AGGGGGGGGGGGGGSGGGGGGGG 270
Score = 37.0 bits (84), Expect = 0.016
Identities = 17/39 (43%), Positives = 19/39 (48%)
Query: 188 RKKHRSRSRSRERHSRSGDRGHGDGGGGGGGGGPGGGGG 226
+ H S+ H R GGGGGGGGG GG GG
Sbjct: 226 QNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGG 264
Score = 37.0 bits (84), Expect = 0.016
Identities = 16/26 (61%), Positives = 16/26 (61%)
Query: 200 RHSRSGDRGHGDGGGGGGGGGPGGGG 225
R G G G GGGGG GGG GGGG
Sbjct: 245 RPGAGGGGGGGGGGGGGSGGGGGGGG 270
Score = 36.2 bits (82), Expect = 0.027
Identities = 15/22 (68%), Positives = 15/22 (68%)
Query: 205 GDRGHGDGGGGGGGGGPGGGGG 226
G G G GGGG GGGG GGG G
Sbjct: 251 GGGGGGGGGGGSGGGGGGGGAG 272
Score = 34.7 bits (78), Expect = 0.077
Identities = 16/29 (55%), Positives = 16/29 (55%)
Query: 197 SRERHSRSGDRGHGDGGGGGGGGGPGGGG 225
SR G G G GGG GGGGG GG G
Sbjct: 244 SRPGAGGGGGGGGGGGGGSGGGGGGGGAG 272
Score = 34.3 bits (77), Expect = 0.10
Identities = 14/21 (66%), Positives = 14/21 (66%)
Query: 205 GDRGHGDGGGGGGGGGPGGGG 225
G G G GGGGGGGG G GG
Sbjct: 255 GGGGGGGSGGGGGGGGAGAGG 275
Score = 34.3 bits (77), Expect = 0.10
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 205 GDRGHGDGGGGGGGGGPGGGGG 226
G G G GGGGGGGG GG G
Sbjct: 256 GGGGGGSGGGGGGGGAGAGGAG 277
Score = 33.9 bits (76), Expect = 0.13
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 205 GDRGHGDGGGGGGGGGPGGGGG 226
G G G GG GGGGGG G G G
Sbjct: 253 GGGGGGGGGSGGGGGGGGAGAG 274
Score = 33.9 bits (76), Expect = 0.13
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 205 GDRGHGDGGGGGGGGGPGGGGG 226
G G G G GGGGGGG G GG
Sbjct: 254 GGGGGGGGSGGGGGGGGAGAGG 275
Score = 32.0 bits (71), Expect = 0.50
Identities = 13/22 (59%), Positives = 13/22 (59%)
Query: 205 GDRGHGDGGGGGGGGGPGGGGG 226
G G G GGGGGG G G G G
Sbjct: 258 GGGGSGGGGGGGGAGAGGAGAG 279
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 42.0 bits (97), Expect = 5e-04
Identities = 18/26 (69%), Positives = 19/26 (73%)
Query: 201 HSRSGDRGHGDGGGGGGGGGPGGGGG 226
+SR G G G GGGGGGGG GGGGG
Sbjct: 243 YSRPGAGGGGGGGGGGGGGSGGGGGG 268
Score = 38.9 bits (89), Expect = 0.004
Identities = 16/23 (69%), Positives = 17/23 (73%)
Query: 204 SGDRGHGDGGGGGGGGGPGGGGG 226
+G G G GGGGGG GG GGGGG
Sbjct: 248 AGGGGGGGGGGGGGSGGGGGGGG 270
Score = 37.0 bits (84), Expect = 0.016
Identities = 17/39 (43%), Positives = 19/39 (48%)
Query: 188 RKKHRSRSRSRERHSRSGDRGHGDGGGGGGGGGPGGGGG 226
+ H S+ H R GGGGGGGGG GG GG
Sbjct: 226 QNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGG 264
Score = 37.0 bits (84), Expect = 0.016
Identities = 16/26 (61%), Positives = 16/26 (61%)
Query: 200 RHSRSGDRGHGDGGGGGGGGGPGGGG 225
R G G G GGGGG GGG GGGG
Sbjct: 245 RPGAGGGGGGGGGGGGGSGGGGGGGG 270
Score = 36.2 bits (82), Expect = 0.027
Identities = 15/22 (68%), Positives = 15/22 (68%)
Query: 205 GDRGHGDGGGGGGGGGPGGGGG 226
G G G GGGG GGGG GGG G
Sbjct: 251 GGGGGGGGGGGSGGGGGGGGAG 272
Score = 34.7 bits (78), Expect = 0.077
Identities = 16/29 (55%), Positives = 16/29 (55%)
Query: 197 SRERHSRSGDRGHGDGGGGGGGGGPGGGG 225
SR G G G GGG GGGGG GG G
Sbjct: 244 SRPGAGGGGGGGGGGGGGSGGGGGGGGAG 272
Score = 34.3 bits (77), Expect = 0.10
Identities = 14/21 (66%), Positives = 14/21 (66%)
Query: 205 GDRGHGDGGGGGGGGGPGGGG 225
G G G GGGGGGGG G GG
Sbjct: 255 GGGGGGGSGGGGGGGGAGAGG 275
Score = 34.3 bits (77), Expect = 0.10
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 205 GDRGHGDGGGGGGGGGPGGGGG 226
G G G GGGGGGGG GG G
Sbjct: 256 GGGGGGSGGGGGGGGAGAGGAG 277
Score = 33.9 bits (76), Expect = 0.13
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 205 GDRGHGDGGGGGGGGGPGGGGG 226
G G G GG GGGGGG G G G
Sbjct: 253 GGGGGGGGGSGGGGGGGGAGAG 274
Score = 33.9 bits (76), Expect = 0.13
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 205 GDRGHGDGGGGGGGGGPGGGGG 226
G G G G GGGGGGG G GG
Sbjct: 254 GGGGGGGGSGGGGGGGGAGAGG 275
Score = 32.0 bits (71), Expect = 0.50
Identities = 13/22 (59%), Positives = 13/22 (59%)
Query: 205 GDRGHGDGGGGGGGGGPGGGGG 226
G G G GGGGGG G G G G
Sbjct: 258 GGGGSGGGGGGGGAGAGGAGAG 279
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 42.0 bits (97), Expect = 5e-04
Identities = 18/26 (69%), Positives = 19/26 (73%)
Query: 201 HSRSGDRGHGDGGGGGGGGGPGGGGG 226
+SR G G G GGGGGGGG GGGGG
Sbjct: 243 YSRPGAGGGGGGGGGGGGGSGGGGGG 268
Score = 38.9 bits (89), Expect = 0.004
Identities = 16/23 (69%), Positives = 17/23 (73%)
Query: 204 SGDRGHGDGGGGGGGGGPGGGGG 226
+G G G GGGGGG GG GGGGG
Sbjct: 248 AGGGGGGGGGGGGGSGGGGGGGG 270
Score = 37.0 bits (84), Expect = 0.016
Identities = 17/39 (43%), Positives = 19/39 (48%)
Query: 188 RKKHRSRSRSRERHSRSGDRGHGDGGGGGGGGGPGGGGG 226
+ H S+ H R GGGGGGGGG GG GG
Sbjct: 226 QNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGG 264
Score = 37.0 bits (84), Expect = 0.016
Identities = 16/26 (61%), Positives = 16/26 (61%)
Query: 200 RHSRSGDRGHGDGGGGGGGGGPGGGG 225
R G G G GGGGG GGG GGGG
Sbjct: 245 RPGAGGGGGGGGGGGGGSGGGGGGGG 270
Score = 36.2 bits (82), Expect = 0.027
Identities = 15/22 (68%), Positives = 15/22 (68%)
Query: 205 GDRGHGDGGGGGGGGGPGGGGG 226
G G G GGGG GGGG GGG G
Sbjct: 251 GGGGGGGGGGGSGGGGGGGGAG 272
Score = 34.7 bits (78), Expect = 0.077
Identities = 16/29 (55%), Positives = 16/29 (55%)
Query: 197 SRERHSRSGDRGHGDGGGGGGGGGPGGGG 225
SR G G G GGG GGGGG GG G
Sbjct: 244 SRPGAGGGGGGGGGGGGGSGGGGGGGGAG 272
Score = 34.3 bits (77), Expect = 0.10
Identities = 14/21 (66%), Positives = 14/21 (66%)
Query: 205 GDRGHGDGGGGGGGGGPGGGG 225
G G G GGGGGGGG G GG
Sbjct: 255 GGGGGGGSGGGGGGGGAGAGG 275
Score = 34.3 bits (77), Expect = 0.10
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 205 GDRGHGDGGGGGGGGGPGGGGG 226
G G G GGGGGGGG GG G
Sbjct: 256 GGGGGGSGGGGGGGGAGAGGAG 277
Score = 33.9 bits (76), Expect = 0.13
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 205 GDRGHGDGGGGGGGGGPGGGGG 226
G G G GG GGGGGG G G G
Sbjct: 253 GGGGGGGGGSGGGGGGGGAGAG 274
Score = 33.9 bits (76), Expect = 0.13
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 205 GDRGHGDGGGGGGGGGPGGGGG 226
G G G G GGGGGGG G GG
Sbjct: 254 GGGGGGGGSGGGGGGGGAGAGG 275
Score = 32.0 bits (71), Expect = 0.50
Identities = 13/22 (59%), Positives = 13/22 (59%)
Query: 205 GDRGHGDGGGGGGGGGPGGGGG 226
G G G GGGGGG G G G G
Sbjct: 258 GGGGSGGGGGGGGAGAGGAGAG 279
>gi|12056465 fibrillarin [Homo sapiens]
Length = 321
Score = 41.6 bits (96), Expect = 6e-04
Identities = 23/41 (56%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 196 RSRERHSRSGDRGHGDGGGGGGGGGPGGGG---GRERDRRR 233
R R R RG G GGGGGGGGG GGGG G R R R
Sbjct: 34 RGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGR 74
Score = 35.4 bits (80), Expect = 0.045
Identities = 20/41 (48%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 192 RSRSRSRERHSRSGDRGHGDGGGGG-GGGGPGGGGGRERDR 231
R R R G G G GGGGG GGGG GG R R R
Sbjct: 34 RGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGR 74
Score = 34.3 bits (77), Expect = 0.10
Identities = 18/38 (47%), Positives = 19/38 (50%)
Query: 196 RSRERHSRSGDRGHGDGGGGGGGGGPGGGGGRERDRRR 233
R R R G G G GG GGGG GG GR R +R
Sbjct: 41 RGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGRGGKR 78
Score = 34.3 bits (77), Expect = 0.10
Identities = 18/38 (47%), Positives = 21/38 (55%)
Query: 205 GDRGHGDGGGGGGGGGPGGGGGRERDRRRLRDRERSGR 242
G G G GGGGGGGG GGG +R R R +R +
Sbjct: 44 GRGGGGGGGGGGGGGRGGGGFHSGGNRGRGRGGKRGNQ 81
Score = 32.3 bits (72), Expect = 0.38
Identities = 15/23 (65%), Positives = 15/23 (65%)
Query: 205 GDRGHGDGGGGGGGGGPGGGGGR 227
G G GD GG GG GG GGG GR
Sbjct: 14 GRGGFGDRGGRGGRGGFGGGRGR 36
Score = 32.0 bits (71), Expect = 0.50
Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
Query: 199 ERHSRSGDRGHGDGGGGGGG------GGPGGGGG 226
+R R G G G G G GGG GG GGGGG
Sbjct: 20 DRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGG 53
Score = 32.0 bits (71), Expect = 0.50
Identities = 18/39 (46%), Positives = 18/39 (46%), Gaps = 14/39 (35%)
Query: 203 RSGDRGHGDGGGG--------------GGGGGPGGGGGR 227
R G G G GGG GGGGG GGGGGR
Sbjct: 21 RGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGR 59
Score = 31.6 bits (70), Expect = 0.65
Identities = 16/27 (59%), Positives = 16/27 (59%)
Query: 205 GDRGHGDGGGGGGGGGPGGGGGRERDR 231
GDRG G GG GGG GGG R R R
Sbjct: 19 GDRGGRGGRGGFGGGRGRGGGFRGRGR 45
>gi|30179900 SRY (sex determining region Y)-box 1 [Homo sapiens]
Length = 391
Score = 41.6 bits (96), Expect = 6e-04
Identities = 18/28 (64%), Positives = 19/28 (67%)
Query: 204 SGDRGHGDGGGGGGGGGPGGGGGRERDR 231
SG G G GGGGGGGGG GGG +DR
Sbjct: 23 SGPAGAGGGGGGGGGGGGGGGAKANQDR 50
Score = 40.4 bits (93), Expect = 0.001
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 210 GDGGGGGGGGGPGGGGGRERDRRRLR 235
G GGGGGGGGG GGGGG + ++ R++
Sbjct: 27 GAGGGGGGGGGGGGGGGAKANQDRVK 52
Score = 34.3 bits (77), Expect = 0.10
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 208 GHGDGGGGGGGGGPGGGGGRERDRR 232
G G GGGGGGGGG G ++R +R
Sbjct: 29 GGGGGGGGGGGGGGGAKANQDRVKR 53
Score = 30.4 bits (67), Expect = 1.5
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 210 GDGGGGGGGGGPGGGGGRERDRRRLRDR 237
G G GGGGGG GGGGG + +DR
Sbjct: 24 GPAGAGGGGGG-GGGGGGGGGAKANQDR 50
>gi|52632383 heterogeneous nuclear ribonucleoprotein L isoform a
[Homo sapiens]
Length = 589
Score = 41.2 bits (95), Expect = 8e-04
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 194 RSRSRERHSRSGDRGHGDGGGGGGGGGPGGGGGRE 228
R+ R + +GD+ G GGGGGG G GGGGG E
Sbjct: 56 RAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGGGE 90
Score = 35.8 bits (81), Expect = 0.035
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 186 QRRKKHRSRSRSRERHSRSGDRGHGDGGGGGGGGGPGGGGGRERDR 231
+RR++ R + E+ RSG GGGGGGG GGG E R
Sbjct: 11 KRRRRLEQRQQPDEQRRRSGAMVKMAAAGGGGGGGRYYGGGSEGGR 56
Score = 31.6 bits (70), Expect = 0.65
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 185 GQRRKKHRSRSRSRERHSRSGDRGHGDGGGGGGGGG 220
G R K + ++H G G G G GGGGGG
Sbjct: 54 GGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGGG 89
Score = 28.5 bits (62), Expect = 5.5
Identities = 17/46 (36%), Positives = 20/46 (43%)
Query: 178 ELRRELCGQRRKKHRSRSRSRERHSRSGDRGHGDGGGGGGGGGPGG 223
E RR QR++ R RS + G G GG GGG GG
Sbjct: 10 EKRRRRLEQRQQPDEQRRRSGAMVKMAAAGGGGGGGRYYGGGSEGG 55
>gi|51702521 POU domain, class 3, transcription factor 2 [Homo
sapiens]
Length = 443
Score = 41.2 bits (95), Expect = 8e-04
Identities = 16/18 (88%), Positives = 16/18 (88%)
Query: 209 HGDGGGGGGGGGPGGGGG 226
HG GGGGGGGGG GGGGG
Sbjct: 67 HGGGGGGGGGGGGGGGGG 84
Score = 39.7 bits (91), Expect = 0.002
Identities = 17/25 (68%), Positives = 17/25 (68%)
Query: 202 SRSGDRGHGDGGGGGGGGGPGGGGG 226
S G G G GGGGGGGGG GGG G
Sbjct: 66 SHGGGGGGGGGGGGGGGGGGGGGDG 90
Score = 35.8 bits (81), Expect = 0.035
Identities = 15/24 (62%), Positives = 15/24 (62%)
Query: 201 HSRSGDRGHGDGGGGGGGGGPGGG 224
H G G G GGGGGGGGG G G
Sbjct: 67 HGGGGGGGGGGGGGGGGGGGGGDG 90
Score = 27.7 bits (60), Expect = 9.4
Identities = 11/17 (64%), Positives = 11/17 (64%)
Query: 205 GDRGHGDGGGGGGGGGP 221
G G G GGGGGG G P
Sbjct: 76 GGGGGGGGGGGGGDGSP 92
>gi|13994190 frizzled 8 [Homo sapiens]
Length = 694
Score = 41.2 bits (95), Expect = 8e-04
Identities = 17/22 (77%), Positives = 17/22 (77%)
Query: 205 GDRGHGDGGGGGGGGGPGGGGG 226
G G G GGG GGGGGPGGGGG
Sbjct: 642 GGPGGGGGGGPGGGGGPGGGGG 663
Score = 40.0 bits (92), Expect = 0.002
Identities = 16/19 (84%), Positives = 16/19 (84%)
Query: 208 GHGDGGGGGGGGGPGGGGG 226
G G G GGGGGGGPGGGGG
Sbjct: 639 GGGGGPGGGGGGGPGGGGG 657
Score = 32.7 bits (73), Expect = 0.29
Identities = 15/26 (57%), Positives = 15/26 (57%)
Query: 205 GDRGHGDGGGGGGGGGPGGGGGRERD 230
G G G GG GGGGG GGGG D
Sbjct: 643 GPGGGGGGGPGGGGGPGGGGGSLYSD 668
Score = 32.3 bits (72), Expect = 0.38
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 202 SRSGDRGHGDGGGGGGGGGP----GGGGGRER 229
+R RG G GGGGG P GGGGG+ R
Sbjct: 188 ARPPHRGGGRGGGGGDAAAPPARGGGGGGKAR 219
Score = 32.3 bits (72), Expect = 0.38
Identities = 15/25 (60%), Positives = 16/25 (64%), Gaps = 5/25 (20%)
Query: 207 RGHGDGGGGG-----GGGGPGGGGG 226
+G GGG G GGGGPGGGGG
Sbjct: 625 KGAAVGGGAGATAAGGGGGPGGGGG 649
Score = 30.0 bits (66), Expect = 1.9
Identities = 13/21 (61%), Positives = 13/21 (61%)
Query: 205 GDRGHGDGGGGGGGGGPGGGG 225
G G GGGGG GG GGGG
Sbjct: 631 GGAGATAAGGGGGPGGGGGGG 651
Score = 28.5 bits (62), Expect = 5.5
Identities = 12/19 (63%), Positives = 12/19 (63%)
Query: 208 GHGDGGGGGGGGGPGGGGG 226
G G GGGGG GGGGG
Sbjct: 632 GAGATAAGGGGGPGGGGGG 650
Score = 28.1 bits (61), Expect = 7.2
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 204 SGDRGHGDGGGGGGGGGPGGGGGRE 228
+G G G G G GGPGG G E
Sbjct: 353 AGGAAAGAGAAGAGAGGPGGRGEYE 377
>gi|5453936 POU class 3 homeobox 3 [Homo sapiens]
Length = 500
Score = 41.2 bits (95), Expect = 8e-04
Identities = 17/23 (73%), Positives = 18/23 (78%)
Query: 204 SGDRGHGDGGGGGGGGGPGGGGG 226
+G G G GGGGGGGGG GGGGG
Sbjct: 27 AGAGGGGGGGGGGGGGGAGGGGG 49
Score = 40.8 bits (94), Expect = 0.001
Identities = 17/26 (65%), Positives = 18/26 (69%)
Query: 201 HSRSGDRGHGDGGGGGGGGGPGGGGG 226
HS + G G GGGGGGGGG GGGG
Sbjct: 23 HSDAAGAGGGGGGGGGGGGGGAGGGG 48
Score = 37.7 bits (86), Expect = 0.009
Identities = 15/21 (71%), Positives = 16/21 (76%)
Query: 208 GHGDGGGGGGGGGPGGGGGRE 228
G G GGGGGGGG GGGGG +
Sbjct: 32 GGGGGGGGGGGGAGGGGGGMQ 52
Score = 36.6 bits (83), Expect = 0.020
Identities = 15/22 (68%), Positives = 16/22 (72%)
Query: 204 SGDRGHGDGGGGGGGGGPGGGG 225
+G G G GGGGGGG G GGGG
Sbjct: 29 AGGGGGGGGGGGGGGAGGGGGG 50
Score = 35.0 bits (79), Expect = 0.059
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 204 SGDRGHGDGGGGGGGGGPGGGGG 226
+G H D G GGGGG GGGGG
Sbjct: 18 AGSIVHSDAAGAGGGGGGGGGGG 40
>gi|110347449 POU domain, class 4, transcription factor 1 [Homo
sapiens]
Length = 419
Score = 41.2 bits (95), Expect = 8e-04
Identities = 17/22 (77%), Positives = 17/22 (77%)
Query: 205 GDRGHGDGGGGGGGGGPGGGGG 226
G G G G GGGGGGGPGGGGG
Sbjct: 155 GGGGPGGGPGGGGGGGPGGGGG 176
Score = 40.0 bits (92), Expect = 0.002
Identities = 16/19 (84%), Positives = 16/19 (84%)
Query: 208 GHGDGGGGGGGGGPGGGGG 226
G G GGGGG GGGPGGGGG
Sbjct: 150 GGGPGGGGGPGGGPGGGGG 168
Score = 37.0 bits (84), Expect = 0.016
Identities = 15/19 (78%), Positives = 15/19 (78%)
Query: 208 GHGDGGGGGGGGGPGGGGG 226
G G GGG GGGGGPGGG G
Sbjct: 146 GPGGGGGPGGGGGPGGGPG 164
Score = 36.6 bits (83), Expect = 0.020
Identities = 15/20 (75%), Positives = 15/20 (75%)
Query: 205 GDRGHGDGGGGGGGGGPGGG 224
G G G GG GGGGGGPGGG
Sbjct: 162 GPGGGGGGGPGGGGGGPGGG 181
Score = 36.2 bits (82), Expect = 0.027
Identities = 17/28 (60%), Positives = 18/28 (64%), Gaps = 5/28 (17%)
Query: 204 SGDRGHGDGGGG-----GGGGGPGGGGG 226
+G G GGGG GGGGGPGGGGG
Sbjct: 131 AGGAGAAAGGGGAHDGPGGGGGPGGGGG 158
Score = 35.4 bits (80), Expect = 0.045
Identities = 15/21 (71%), Positives = 15/21 (71%)
Query: 205 GDRGHGDGGGGGGGGGPGGGG 225
G G G GGGGGGG G GGGG
Sbjct: 157 GGPGGGPGGGGGGGPGGGGGG 177
Score = 33.5 bits (75), Expect = 0.17
Identities = 15/26 (57%), Positives = 15/26 (57%)
Query: 201 HSRSGDRGHGDGGGGGGGGGPGGGGG 226
H G G GGGG GGG GGGGG
Sbjct: 144 HDGPGGGGGPGGGGGPGGGPGGGGGG 169
Score = 33.5 bits (75), Expect = 0.17
Identities = 14/19 (73%), Positives = 14/19 (73%)
Query: 208 GHGDGGGGGGGGGPGGGGG 226
G G GGGGG GGG GG GG
Sbjct: 162 GPGGGGGGGPGGGGGGPGG 180
Score = 32.3 bits (72), Expect = 0.38
Identities = 14/21 (66%), Positives = 14/21 (66%)
Query: 205 GDRGHGDGGGGGGGGGPGGGG 225
G G G GGG GGGGG GGG
Sbjct: 161 GGPGGGGGGGPGGGGGGPGGG 181
Score = 31.6 bits (70), Expect = 0.65
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 204 SGDRGHGDGGGGGGGGGPGGGGG 226
+G G DG GGGGG G GGG G
Sbjct: 138 AGGGGAHDGPGGGGGPGGGGGPG 160
Score = 31.6 bits (70), Expect = 0.65
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 205 GDRGHGDGGGGGGGGGPGGGGG 226
G G GGGGGG GG GGG G
Sbjct: 158 GPGGGPGGGGGGGPGGGGGGPG 179
Score = 27.7 bits (60), Expect = 9.4
Identities = 13/21 (61%), Positives = 13/21 (61%)
Query: 205 GDRGHGDGGGGGGGGGPGGGG 225
G G G GGGGGG GG GG
Sbjct: 165 GGGGGGPGGGGGGPGGGLLGG 185
>gi|89145413 short stature homeobox 2 isoform a [Homo sapiens]
Length = 331
Score = 40.8 bits (94), Expect = 0.001
Identities = 18/29 (62%), Positives = 19/29 (65%)
Query: 198 RERHSRSGDRGHGDGGGGGGGGGPGGGGG 226
R+ S R G GGGGGGGGG GGGGG
Sbjct: 48 RDDRSSPAVRAAGGGGGGGGGGGGGGGGG 76
Score = 40.8 bits (94), Expect = 0.001
Identities = 19/32 (59%), Positives = 20/32 (62%)
Query: 194 RSRSRERHSRSGDRGHGDGGGGGGGGGPGGGG 225
RS R + G G G GGGGGGGGG GGGG
Sbjct: 51 RSSPAVRAAGGGGGGGGGGGGGGGGGGVGGGG 82
Score = 38.9 bits (89), Expect = 0.004
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 184 CGQRRKKHRSRSRSRERHSRSGDRGHGDGGGGGGG-GGPGGGGGRERDRRRLRD 236
C + + RS R G G G GGGGGGG GG G GGG R +R+
Sbjct: 43 CTEAGRDDRSSPAVRAAGGGGGGGGGGGGGGGGGGVGGGGAGGGAGGGRSPVRE 96
Score = 36.2 bits (82), Expect = 0.027
Identities = 18/32 (56%), Positives = 18/32 (56%)
Query: 205 GDRGHGDGGGGGGGGGPGGGGGRERDRRRLRD 236
G G G GGGG GGGG GGG G R R D
Sbjct: 67 GGGGGGGGGGGVGGGGAGGGAGGGRSPVRELD 98
>gi|167830436 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 2
[Homo sapiens]
Length = 994
Score = 40.8 bits (94), Expect = 0.001
Identities = 19/35 (54%), Positives = 21/35 (60%)
Query: 204 SGDRGHGDGGGGGGGGGPGGGGGRERDRRRLRDRE 238
+G G G GGGGGGG GG GGR R L+ RE
Sbjct: 27 AGGHGGNRGSGGGGGGGGGGRGGRGRHPGHLKGRE 61
Score = 35.4 bits (80), Expect = 0.045
Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 191 HRSRSRSRERHSRSGDRGHGDGGG-----GGGGGGPGGGGGR 227
H++ R S G G G GG G GGGG GGGGGR
Sbjct: 6 HQNWGRDGGPRSSGGGYGGGPAGGHGGNRGSGGGGGGGGGGR 47
Score = 30.8 bits (68), Expect = 1.1
Identities = 15/33 (45%), Positives = 16/33 (48%)
Query: 197 SRERHSRSGDRGHGDGGGGGGGGGPGGGGGRER 229
S + H G G GGG GGGP GG G R
Sbjct: 2 SYDYHQNWGRDGGPRSSGGGYGGGPAGGHGGNR 34
Score = 29.6 bits (65), Expect = 2.5
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 201 HSRSGDRGHGDGGGGGGGGGPGGGGGRERDR 231
H + G G GGGGGG GG G G + R
Sbjct: 30 HGGNRGSGGGGGGGGGGRGGRGRHPGHLKGR 60
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.140 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,149,280
Number of Sequences: 37866
Number of extensions: 600950
Number of successful extensions: 17903
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 168
Number of HSP's that attempted gapping in prelim test: 7433
Number of HSP's gapped (non-prelim): 5752
length of query: 243
length of database: 18,247,518
effective HSP length: 99
effective length of query: 144
effective length of database: 14,498,784
effective search space: 2087824896
effective search space used: 2087824896
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.