U2AF1 33525

Name: U2AF1	Sequence: fasta or formatted (240aa)		NCBI GI: 5803207
Description: U2 small nuclear RNA auxillary factor 1 isoform a		Referenced in: Capping and Splicing
Other entries for this name: alt prot [240aa] U2 small nuclear RNA auxillary factor 1 isoform b alt prot [167aa] U2 small nuclear RNA auxillary factor 1 isoform c
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.2 10 1 C cysteine 3.8 9 2 D aspartate 5.4 13 1 E glutamate 10.4 25 2 F phenylalanine 5.4 13 2 G glycine 10.8 26 12 H histidine 2.9 7 1 I isoleucine 2.9 7 1 K lysine 4.2 10 2 L leucine 5.0 12 2 M methionine 2.5 6 1 N asparagine 5.0 12 2 P proline 2.1 5 1 Q glutamine 2.5 6 1 R arginine 15.0 36 3 S serine 7.1 17 2 T threonine 2.5 6 1 V valine 4.6 11 1 W tryptophan 0.4 1 1 Y tyrosine 3.3 8 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 U2 small nuclear RNA auxillary factor 1 isoform a [Ho... U2AF1 0.977 U2 small nuclear RNA auxillary factor 1 isoform b [H... LOC441722 0.849 PREDICTED: similar to U2 small nuclear RNA auxillary... LOC441722 0.841 PREDICTED: similar to U2 small nuclear RNA auxillary... U2AF1 0.688 U2 small nuclear RNA auxillary factor 1 isoform c [H... U2AF1L4 0.523 U2 small nuclear RNA auxiliary factor 1-like 4 isofo... U2AF1L4 0.339 U2 small nuclear RNA auxiliary factor 1-like 4 isofo... ZRSR2 0.234 U2 small nuclear RNA auxiliary factor 1-like 2 SNRNP70 0.042 U1 small nuclear ribonucleoprotein 70 kDa SCAF1 0.040 SR-related CTD-associated factor 1 DDX46 0.040 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 RSRC2 0.040 arginine/serine-rich coiled-coil 2 isoform b RSRC2 0.040 arginine/serine-rich coiled-coil 2 isoform a PRPF38B 0.040 PRP38 pre-mRNA processing factor 38 (yeast) domain ... SFRS2 0.040 splicing factor, arginine/serine-rich 2 RBM17 0.036 RNA binding motif protein 17 RBM17 0.036 RNA binding motif protein 17 ACIN1 0.036 apoptotic chromatin condensation inducer 1 AVEN 0.036 cell death regulator aven SNRNP27 0.036 small nuclear ribonucleoprotein 27kDa (U4/U6.U5) [Ho... RBM25 0.036 RNA binding motif protein 25 LOC100288548 0.036 PREDICTED: hypothetical protein XP_002342129 TRA2A 0.036 transformer-2 alpha FBL 0.033 fibrillarin RDBP 0.033 RD RNA-binding protein TRA2B 0.033 splicing factor, arginine/serine-rich 10 DHX57 0.033 DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 CROP 0.031 cisplatin resistance-associated overexpressed protei... CROP 0.031 cisplatin resistance-associated overexpressed protei... RBM39 0.031 RNA binding motif protein 39 isoform b Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.