Guide to the Human Genome
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Name: LOC441722 Sequence: fasta or formatted (243aa) NCBI GI: 89038281
Description:

PREDICTED: similar to U2 small nuclear RNA auxillary factor 1

Referenced in:

Capping and Splicing

Other entries for this name:
alt prot [243aa] PREDICTED: similar to U2 small nuclear RNA auxillary factor 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         11           1
 C cysteine            4.9         12           2
 D aspartate           5.8         14           1
 E glutamate           9.5         23           2
 F phenylalanine       5.3         13           2
 G glycine            13.2         32           9
 H histidine           4.1         10           2
 I isoleucine          3.3          8           1
 K lysine              3.7          9           2
 L leucine             6.6         16           2
 M methionine          1.6          4           1
 N asparagine          4.5         11           2
 P proline             3.3          8           1
 Q glutamine           2.9          7           1
 R arginine           11.5         28           3
 S serine              6.6         16           1
 T threonine           2.1          5           1
 V valine              4.1         10           1
 W tryptophan          0.8          2           1
 Y tyrosine            1.6          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to U2 small nuclear RNA auxillary... 
LOC441722             0.994   PREDICTED: similar to U2 small nuclear RNA auxillary...
U2AF1                 0.812   U2 small nuclear RNA auxillary factor 1 isoform a [Ho...
U2AF1                 0.790   U2 small nuclear RNA auxillary factor 1 isoform b [H...
U2AF1                 0.576   U2 small nuclear RNA auxillary factor 1 isoform c [H...
U2AF1L4               0.422   U2 small nuclear RNA auxiliary factor 1-like 4 isofo...
U2AF1L4               0.253   U2 small nuclear RNA auxiliary factor 1-like 4 isofo...
ZRSR2                 0.162   U2 small nuclear RNA auxiliary factor 1-like 2 
TRA2A                 0.040   transformer-2 alpha 
MBD2                  0.040   methyl-CpG binding domain protein 2 testis-specific i...
MBD2                  0.040   methyl-CpG binding domain protein 2 isoform 1 
FAM98B                0.038   family with sequence similarity 98, member B isofor...
PURA                  0.036   purine-rich element binding protein A 
ANKRD17               0.034   ankyrin repeat domain protein 17 isoform a 
ANKRD17               0.034   ankyrin repeat domain protein 17 isoform b 
AR                    0.034   androgen receptor isoform 1 
CAPNS1                0.034   calpain, small subunit 1 
CAPNS1                0.034   calpain, small subunit 1 
ARID1B                0.034   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.034   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.034   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
FBL                   0.034   fibrillarin 
SOX1                  0.034   SRY (sex determining region Y)-box 1 
HNRNPL                0.032   heterogeneous nuclear ribonucleoprotein L isoform a ...
POU3F2                0.032   POU domain, class 3, transcription factor 2 
FZD8                  0.032   frizzled 8 
POU3F3                0.032   POU class 3 homeobox 3 
POU4F1                0.032   POU domain, class 4, transcription factor 1 
SHOX2                 0.032   short stature homeobox 2 isoform a 
DHX36                 0.032   DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 2...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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