LOC441722 36820

Name: LOC441722	Sequence: fasta or formatted (243aa)		NCBI GI: 89038927
Description: PREDICTED: similar to U2 small nuclear RNA auxillary factor 1		Referenced in: Capping and Splicing
Other entries for this name: alt prot [243aa] PREDICTED: similar to U2 small nuclear RNA auxillary factor 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.5 11 1 C cysteine 4.9 12 2 D aspartate 5.8 14 1 E glutamate 9.5 23 2 F phenylalanine 5.3 13 2 G glycine 13.2 32 9 H histidine 4.1 10 2 I isoleucine 3.3 8 1 K lysine 3.7 9 2 L leucine 6.6 16 2 M methionine 1.6 4 1 N asparagine 4.5 11 2 P proline 3.3 8 1 Q glutamine 2.9 7 1 R arginine 11.5 28 3 S serine 6.2 15 1 T threonine 2.1 5 1 V valine 4.1 10 1 W tryptophan 0.8 2 1 Y tyrosine 2.1 5 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PREDICTED: similar to U2 small nuclear RNA auxillary... LOC441722 0.992 PREDICTED: similar to U2 small nuclear RNA auxillary... U2AF1 0.819 U2 small nuclear RNA auxillary factor 1 isoform a [Ho... U2AF1 0.794 U2 small nuclear RNA auxillary factor 1 isoform b [H... U2AF1 0.583 U2 small nuclear RNA auxillary factor 1 isoform c [H... U2AF1L4 0.421 U2 small nuclear RNA auxiliary factor 1-like 4 isofo... U2AF1L4 0.252 U2 small nuclear RNA auxiliary factor 1-like 4 isofo... ZRSR2 0.165 U2 small nuclear RNA auxiliary factor 1-like 2 TRA2A 0.040 transformer-2 alpha MBD2 0.040 methyl-CpG binding domain protein 2 testis-specific i... MBD2 0.040 methyl-CpG binding domain protein 2 isoform 1 FAM98B 0.038 family with sequence similarity 98, member B isofor... PURA 0.036 purine-rich element binding protein A ANKRD17 0.034 ankyrin repeat domain protein 17 isoform a ANKRD17 0.034 ankyrin repeat domain protein 17 isoform b AR 0.034 androgen receptor isoform 1 CAPNS1 0.034 calpain, small subunit 1 CAPNS1 0.034 calpain, small subunit 1 ARID1B 0.034 AT rich interactive domain 1B (SWI1-like) isoform 2 ... ARID1B 0.034 AT rich interactive domain 1B (SWI1-like) isoform 1 ... ARID1B 0.034 AT rich interactive domain 1B (SWI1-like) isoform 3 ... FBL 0.034 fibrillarin SOX1 0.034 SRY (sex determining region Y)-box 1 HNRNPL 0.032 heterogeneous nuclear ribonucleoprotein L isoform a ... POU3F2 0.032 POU domain, class 3, transcription factor 2 FZD8 0.032 frizzled 8 POU3F3 0.032 POU class 3 homeobox 3 POU4F1 0.032 POU domain, class 4, transcription factor 1 SHOX2 0.032 short stature homeobox 2 isoform a DHX36 0.032 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 2... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.