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Search of human proteins with 89035494
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|89035494 PREDICTED: hypothetical protein LOC400027 isoform 2
[Homo sapiens]
(120 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169204669 PREDICTED: hypothetical protein LOC400027 [Homo sap... 259 4e-70
gi|89036097 PREDICTED: hypothetical protein LOC400027 isoform 4 ... 259 4e-70
gi|89035494 PREDICTED: hypothetical protein LOC400027 isoform 2 ... 259 4e-70
gi|169213235 PREDICTED: hypothetical protein [Homo sapiens] 37 0.003
gi|169212744 PREDICTED: hypothetical protein [Homo sapiens] 37 0.003
gi|222537714 taxilin beta [Homo sapiens] 35 0.010
gi|33188439 cytoplasmic polyadenylation element binding protein ... 35 0.010
gi|33188441 cytoplasmic polyadenylation element binding protein ... 35 0.010
gi|14790190 spen homolog, transcriptional regulator [Homo sapiens] 35 0.017
gi|147902746 MEX3A protein [Homo sapiens] 33 0.038
gi|24497513 homeobox A3 isoform a [Homo sapiens] 33 0.050
gi|13562112 homeobox A3 isoform a [Homo sapiens] 33 0.050
gi|239747677 PREDICTED: hypothetical protein [Homo sapiens] 33 0.065
gi|239741546 PREDICTED: hypothetical protein XP_002342233 [Homo ... 33 0.065
gi|7662236 TSC22 domain family, member 2 [Homo sapiens] 32 0.11
gi|58219048 hairy and enhancer of split 5 [Homo sapiens] 32 0.11
gi|5032105 small optic lobes [Homo sapiens] 32 0.11
gi|113425957 PREDICTED: hypothetical protein [Homo sapiens] 31 0.19
gi|33356148 formin-like 1 [Homo sapiens] 31 0.19
gi|157388967 coiled-coil domain containing 87 [Homo sapiens] 31 0.19
gi|157042792 coiled-coil domain containing 64B [Homo sapiens] 31 0.19
gi|187761341 acyl-CoA thioesterase 4 [Homo sapiens] 31 0.25
gi|104876423 heparan sulfate D-glucosaminyl 3-O-sulfotransferase... 31 0.25
gi|46397390 pogo transposable element with ZNF domain isoform 1 ... 30 0.32
gi|46397394 pogo transposable element with ZNF domain isoform 2 ... 30 0.32
gi|169210192 PREDICTED: hypothetical protein [Homo sapiens] 30 0.32
gi|110832843 TBP-associated factor 4 [Homo sapiens] 30 0.32
gi|116292174 fidgetin-like 2 [Homo sapiens] 30 0.32
gi|153070260 myristoylated alanine-rich protein kinase C substra... 30 0.32
gi|151301053 RNA binding motif protein 33 [Homo sapiens] 30 0.32
>gi|169204669 PREDICTED: hypothetical protein LOC400027 [Homo
sapiens]
Length = 120
Score = 259 bits (661), Expect = 4e-70
Identities = 120/120 (100%), Positives = 120/120 (100%)
Query: 1 MWASELRGPGCADSLNAALAHSPLRNRQCRGFPGGGHSIQPLYTPRAPAAAPPPPHKMAA 60
MWASELRGPGCADSLNAALAHSPLRNRQCRGFPGGGHSIQPLYTPRAPAAAPPPPHKMAA
Sbjct: 1 MWASELRGPGCADSLNAALAHSPLRNRQCRGFPGGGHSIQPLYTPRAPAAAPPPPHKMAA 60
Query: 61 PIEETAAASPAPFCGRREICQHGKPLLRMHPSLETPLKGWSLGDHIKRKMPTTSTTSTRF 120
PIEETAAASPAPFCGRREICQHGKPLLRMHPSLETPLKGWSLGDHIKRKMPTTSTTSTRF
Sbjct: 61 PIEETAAASPAPFCGRREICQHGKPLLRMHPSLETPLKGWSLGDHIKRKMPTTSTTSTRF 120
>gi|89036097 PREDICTED: hypothetical protein LOC400027 isoform 4
[Homo sapiens]
Length = 120
Score = 259 bits (661), Expect = 4e-70
Identities = 120/120 (100%), Positives = 120/120 (100%)
Query: 1 MWASELRGPGCADSLNAALAHSPLRNRQCRGFPGGGHSIQPLYTPRAPAAAPPPPHKMAA 60
MWASELRGPGCADSLNAALAHSPLRNRQCRGFPGGGHSIQPLYTPRAPAAAPPPPHKMAA
Sbjct: 1 MWASELRGPGCADSLNAALAHSPLRNRQCRGFPGGGHSIQPLYTPRAPAAAPPPPHKMAA 60
Query: 61 PIEETAAASPAPFCGRREICQHGKPLLRMHPSLETPLKGWSLGDHIKRKMPTTSTTSTRF 120
PIEETAAASPAPFCGRREICQHGKPLLRMHPSLETPLKGWSLGDHIKRKMPTTSTTSTRF
Sbjct: 61 PIEETAAASPAPFCGRREICQHGKPLLRMHPSLETPLKGWSLGDHIKRKMPTTSTTSTRF 120
>gi|89035494 PREDICTED: hypothetical protein LOC400027 isoform 2
[Homo sapiens]
Length = 120
Score = 259 bits (661), Expect = 4e-70
Identities = 120/120 (100%), Positives = 120/120 (100%)
Query: 1 MWASELRGPGCADSLNAALAHSPLRNRQCRGFPGGGHSIQPLYTPRAPAAAPPPPHKMAA 60
MWASELRGPGCADSLNAALAHSPLRNRQCRGFPGGGHSIQPLYTPRAPAAAPPPPHKMAA
Sbjct: 1 MWASELRGPGCADSLNAALAHSPLRNRQCRGFPGGGHSIQPLYTPRAPAAAPPPPHKMAA 60
Query: 61 PIEETAAASPAPFCGRREICQHGKPLLRMHPSLETPLKGWSLGDHIKRKMPTTSTTSTRF 120
PIEETAAASPAPFCGRREICQHGKPLLRMHPSLETPLKGWSLGDHIKRKMPTTSTTSTRF
Sbjct: 61 PIEETAAASPAPFCGRREICQHGKPLLRMHPSLETPLKGWSLGDHIKRKMPTTSTTSTRF 120
>gi|169213235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 37.0 bits (84), Expect = 0.003
Identities = 31/80 (38%), Positives = 32/80 (40%), Gaps = 11/80 (13%)
Query: 10 GCADSLNAALAHSPLRNRQCRGFPGGGHSIQPLYTPRAPAAAPPPPHKMAAP-------- 61
G AD AA A S L R RG G PLY AP APPPP P
Sbjct: 30 GRADEEGAAGAGSKLWRRP-RGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGPSRSERPRA 88
Query: 62 -IEETAAASPAPFCGRREIC 80
+ A SP P GRR C
Sbjct: 89 GLRPGAFVSPGPL-GRRASC 107
>gi|169212744 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 37.0 bits (84), Expect = 0.003
Identities = 31/80 (38%), Positives = 32/80 (40%), Gaps = 11/80 (13%)
Query: 10 GCADSLNAALAHSPLRNRQCRGFPGGGHSIQPLYTPRAPAAAPPPPHKMAAP-------- 61
G AD AA A S L R RG G PLY AP APPPP P
Sbjct: 30 GRADEEGAAGAGSKLWRRP-RGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGPSRSERPRA 88
Query: 62 -IEETAAASPAPFCGRREIC 80
+ A SP P GRR C
Sbjct: 89 GLRPGAFVSPGPL-GRRASC 107
>gi|222537714 taxilin beta [Homo sapiens]
Length = 684
Score = 35.4 bits (80), Expect = 0.010
Identities = 17/51 (33%), Positives = 23/51 (45%)
Query: 28 QCRGFPGGGHSIQPLYTPRAPAAAPPPPHKMAAPIEETAAASPAPFCGRRE 78
QC G P G + Q + P A A+ P A +++ A PAP C E
Sbjct: 589 QCEGLPVGAQADQASWKPEAEASGQAPQAPTEASLQKMEADVPAPACAAEE 639
>gi|33188439 cytoplasmic polyadenylation element binding protein 2
isoform B [Homo sapiens]
Length = 589
Score = 35.4 bits (80), Expect = 0.010
Identities = 35/125 (28%), Positives = 45/125 (36%), Gaps = 32/125 (25%)
Query: 9 PGCADSLNAAL--AHSPLRNRQCRGFP-----GGGHSIQPLYTPRAPAAAPPPPHKM--- 58
PG S+N A + SP+ C G GGG ++ A A PPPP M
Sbjct: 14 PGLPSSMNPAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGGPFS--ATAVPPPPPPAMNIP 71
Query: 59 -------AAPIEETAAASP-------------APFCGRREICQHGKPLLRMHPSLETPLK 98
AAP + + SP A F +R H +PLL+ P
Sbjct: 72 QQQPPPPAAPQQPQSRRSPVSPQLQQQHQAAAAAFLQQRNSYNHHQPLLKQSPWSNHQSS 131
Query: 99 GWSLG 103
GW G
Sbjct: 132 GWGTG 136
>gi|33188441 cytoplasmic polyadenylation element binding protein 2
isoform A [Homo sapiens]
Length = 559
Score = 35.4 bits (80), Expect = 0.010
Identities = 35/125 (28%), Positives = 45/125 (36%), Gaps = 32/125 (25%)
Query: 9 PGCADSLNAAL--AHSPLRNRQCRGFP-----GGGHSIQPLYTPRAPAAAPPPPHKM--- 58
PG S+N A + SP+ C G GGG ++ A A PPPP M
Sbjct: 14 PGLPSSMNPAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGGPFS--ATAVPPPPPPAMNIP 71
Query: 59 -------AAPIEETAAASP-------------APFCGRREICQHGKPLLRMHPSLETPLK 98
AAP + + SP A F +R H +PLL+ P
Sbjct: 72 QQQPPPPAAPQQPQSRRSPVSPQLQQQHQAAAAAFLQQRNSYNHHQPLLKQSPWSNHQSS 131
Query: 99 GWSLG 103
GW G
Sbjct: 132 GWGTG 136
>gi|14790190 spen homolog, transcriptional regulator [Homo sapiens]
Length = 3664
Score = 34.7 bits (78), Expect = 0.017
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Query: 32 FPGGGHSIQPLYTPRAPAAAPPP---PHKMAAPIEETAAASPAPFCGRREICQHGKPLLR 88
FP P T A A PPP P + P++ T A PAP C ++ Q G+P
Sbjct: 3325 FPAASSVGLPSRTKTA-AQGPPPEGEPLQPPQPVQSTQPAQPAPPCPPSQLGQPGQPPSS 3383
Query: 89 MHPSLETPLKGWSLG 103
P + KG G
Sbjct: 3384 KMPQVSQEAKGTQTG 3398
>gi|147902746 MEX3A protein [Homo sapiens]
Length = 520
Score = 33.5 bits (75), Expect = 0.038
Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 31 GFPGGGHSIQPLYTPRAPAAAPPPPHKMAAPIEETAAASPAP 72
G GGG QP P+ PA PPP AAP AA +P P
Sbjct: 63 GGGGGGAPAQPAAPPQ-PAPPPPPAAPPAAPTAAPAAQTPQP 103
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 33.1 bits (74), Expect = 0.050
Identities = 30/112 (26%), Positives = 43/112 (38%), Gaps = 8/112 (7%)
Query: 6 LRGPGCADSLNAALAHSPLRNRQCRGFPGGGHSIQPLYTPRAPAAAPPPPHKMAAPIEET 65
LR S +L PL + P QP P AP A PPP A+P +
Sbjct: 72 LRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASP-PQN 130
Query: 66 AAASPAPFCGRREICQHGKPLLRMHPSLETPLKGWSLGDHIKRKMPTTSTTS 117
A+ +P P + PLL P++ + W K T+S++S
Sbjct: 131 ASNNPTPANAAK------SPLLN-SPTVAKQIFPWMKESRQNTKQKTSSSSS 175
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 33.1 bits (74), Expect = 0.050
Identities = 30/112 (26%), Positives = 43/112 (38%), Gaps = 8/112 (7%)
Query: 6 LRGPGCADSLNAALAHSPLRNRQCRGFPGGGHSIQPLYTPRAPAAAPPPPHKMAAPIEET 65
LR S +L PL + P QP P AP A PPP A+P +
Sbjct: 72 LRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASP-PQN 130
Query: 66 AAASPAPFCGRREICQHGKPLLRMHPSLETPLKGWSLGDHIKRKMPTTSTTS 117
A+ +P P + PLL P++ + W K T+S++S
Sbjct: 131 ASNNPTPANAAK------SPLLN-SPTVAKQIFPWMKESRQNTKQKTSSSSS 175
>gi|239747677 PREDICTED: hypothetical protein [Homo sapiens]
Length = 262
Score = 32.7 bits (73), Expect = 0.065
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 2 WASELRGPGCADSLNAALAHSPLRNRQCRGFPGGGHSIQPLYTPRAPAAAPPPPHKMAAP 61
W S LRG G A + R + R HS+ P + A +A PPPP ++A P
Sbjct: 66 WISYLRGRGSRSERGRECACARARLARARS----PHSMSPTHFHGA-SAPPPPPPRLAQP 120
Query: 62 IEETAAASPAPFCGRR 77
A P P RR
Sbjct: 121 RAGPAPPPPGPPSLRR 136
>gi|239741546 PREDICTED: hypothetical protein XP_002342233 [Homo
sapiens]
Length = 262
Score = 32.7 bits (73), Expect = 0.065
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 2 WASELRGPGCADSLNAALAHSPLRNRQCRGFPGGGHSIQPLYTPRAPAAAPPPPHKMAAP 61
W S LRG G A + R + R HS+ P + A +A PPPP ++A P
Sbjct: 66 WISYLRGRGSRSERGRECACARARLARARS----PHSMSPTHFHGA-SAPPPPPPRLAQP 120
Query: 62 IEETAAASPAPFCGRR 77
A P P RR
Sbjct: 121 RAGPAPPPPGPPSLRR 136
>gi|7662236 TSC22 domain family, member 2 [Homo sapiens]
Length = 780
Score = 32.0 bits (71), Expect = 0.11
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 33 PGGGHSIQPLYTPRAPAAAPPPPHKMAAPIEETAAASPAPFCGRREICQH 82
PGG H++ P P PAA P P + T PAP +++ H
Sbjct: 496 PGGPHAVVP-GVPNVPAAVPAPSVPSVSTTSVTMPNVPAPLAQSQQLSSH 544
>gi|58219048 hairy and enhancer of split 5 [Homo sapiens]
Length = 166
Score = 32.0 bits (71), Expect = 0.11
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 41 PLYTPRAPAAAPPPPHKMAAPIEETAAASPAPFCG 75
P P+AP AAPPP ++A AAA+ P CG
Sbjct: 129 PAKEPKAPGAAPPP--ALSAKATAAAAAAHQPACG 161
>gi|5032105 small optic lobes [Homo sapiens]
Length = 1086
Score = 32.0 bits (71), Expect = 0.11
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 31 GFPGGGHSIQPLYTPRAPAAAPPPPH-KMAAPIEETAAASPAPFCGRREI 79
G PG G P T + PAA P PP +P T +P P RRE+
Sbjct: 203 GLPGEGAEANPPATSQGPAAEPEPPRVPPFSPFSSTLQNNPVP-RSRREV 251
>gi|113425957 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 31.2 bits (69), Expect = 0.19
Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 8 GPGCADSLNAALAHSPLRNRQCRGFPGGGHS----IQPLYTPRAPAAAPPPPHKMAAPIE 63
GP + + A SP RQ RG GGG+ + PL P P PP P A
Sbjct: 43 GPFQEEPQDTENAQSPGSPRQARGPGGGGNPGDTVLTPLSAPADPNTHPPAPGTQPALPP 102
Query: 64 ETAAASPAPFCGRR 77
+ CG R
Sbjct: 103 LARPCRVSTLCGSR 116
>gi|33356148 formin-like 1 [Homo sapiens]
Length = 1100
Score = 31.2 bits (69), Expect = 0.19
Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 6 LRGPGCADSLN---AALAHSPLRNRQCRGFPGGGHS--IQPLYTPRAPAAAPPPPHKMAA 60
LRGPG A S+ A+A + G P G S + P P AA PPPP
Sbjct: 492 LRGPGDAVSIEILPVAVATPSGGDAPTPGVPTGSPSPDLAPAAEPAPGAAPPPPPPLPGL 551
Query: 61 PIEETAAASPAP 72
P + A S P
Sbjct: 552 PSPQEAPPSAPP 563
>gi|157388967 coiled-coil domain containing 87 [Homo sapiens]
Length = 849
Score = 31.2 bits (69), Expect = 0.19
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 10/46 (21%)
Query: 61 PIEETAAASPAPFCGRREICQHGKPLLRMHPSLETPLKGWSLGDHI 106
P+ T+ ASP+PFC P LR S+ + +GW L D +
Sbjct: 290 PVAPTSRASPSPFC----------PELRRGQSMPSLREGWRLADEL 325
>gi|157042792 coiled-coil domain containing 64B [Homo sapiens]
Length = 508
Score = 31.2 bits (69), Expect = 0.19
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 12 ADSLNAALAHSPLRNRQCRGF--PGGGHSIQPLYTPRAPAAAPPPPHKMAAPIEETAAAS 69
A SL + LAHS Q +G PG + + T +A + P PP ++ P ++ + S
Sbjct: 292 AASLQSELAHSLDDGDQGQGADAPGDTPTTRSPKTRKASSPQPSPPEEILEPPKKRTSLS 351
Query: 70 PAPFCGRREI 79
PA +E+
Sbjct: 352 PAEILEEKEV 361
>gi|187761341 acyl-CoA thioesterase 4 [Homo sapiens]
Length = 421
Score = 30.8 bits (68), Expect = 0.25
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 2 WASELRGPGCADSLNAALAHSPLRNRQCRGFPGGGHSIQPLYTPRAPAA 50
W SEL ++ L A P Q +PG GH I+P Y P PA+
Sbjct: 329 WRSELYAQTVSERLQAHGKEKP----QIICYPGTGHYIEPPYFPLCPAS 373
>gi|104876423 heparan sulfate D-glucosaminyl 3-O-sulfotransferase 4
[Homo sapiens]
Length = 456
Score = 30.8 bits (68), Expect = 0.25
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 8/81 (9%)
Query: 29 CRGFPGGGHSIQ-PLYTPRAPAAA------PPPPHKMAAPIEETAAASPAPFCGRREICQ 81
C GG S+Q PL +P AA PPPP + P+ A + P P +
Sbjct: 49 CYSLLGGSGSLQFPLALQESPGAAAEPPPSPPPPSLLPTPVRLGAPSQP-PAPPPLDNAS 107
Query: 82 HGKPLLRMHPSLETPLKGWSL 102
HG+P GW L
Sbjct: 108 HGEPPEPPEQPAAPGTDGWGL 128
Score = 26.2 bits (56), Expect = 6.1
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 47 APAAAPPPPHKMAAPIEETAAASPAP 72
AP PPPP +AAP A+A P
Sbjct: 6 APPPPPPPPPPLAAPPPPGASAKGPP 31
>gi|46397390 pogo transposable element with ZNF domain isoform 1
[Homo sapiens]
Length = 1410
Score = 30.4 bits (67), Expect = 0.32
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 15/66 (22%)
Query: 45 PRAPAAAPPPPHKMAAPIEETAAASPAPFCGRREICQHGKPLLRMHPSLETPLKGWSLGD 104
P P+AA PP + AP+ T +++P P + P + P ++GD
Sbjct: 415 PSVPSAAKPPSPEKTAPVASTPSSTPIP---------------ALSPPTKVPEPNENVGD 459
Query: 105 HIKRKM 110
++ K+
Sbjct: 460 AVQTKL 465
>gi|46397394 pogo transposable element with ZNF domain isoform 2
[Homo sapiens]
Length = 1357
Score = 30.4 bits (67), Expect = 0.32
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 15/66 (22%)
Query: 45 PRAPAAAPPPPHKMAAPIEETAAASPAPFCGRREICQHGKPLLRMHPSLETPLKGWSLGD 104
P P+AA PP + AP+ T +++P P + P + P ++GD
Sbjct: 362 PSVPSAAKPPSPEKTAPVASTPSSTPIP---------------ALSPPTKVPEPNENVGD 406
Query: 105 HIKRKM 110
++ K+
Sbjct: 407 AVQTKL 412
>gi|169210192 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 30.4 bits (67), Expect = 0.32
Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 8 GPGCADSLNAALAHSPLRNRQCRGFPGGGHS----IQPLYTPRAPAAAPPPPHKMAAPIE 63
GP + + A SP RQ RG GGG+ + PL P P PP P A
Sbjct: 43 GPFQEEPQDTENAQSPGCPRQARGPGGGGNPGDTVLTPLSAPADPNTHPPAPGTQPALPP 102
Query: 64 ETAAASPAPFCGRR 77
+ CG R
Sbjct: 103 LARPCRVSTLCGSR 116
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 30.4 bits (67), Expect = 0.32
Identities = 29/85 (34%), Positives = 34/85 (40%), Gaps = 23/85 (27%)
Query: 8 GPGCADSLNAALAHSPLRNRQCRGFPG------GGHSIQPLYTPRAP-----------AA 50
GPG A +LN + A L N P G ++ PL P AP AA
Sbjct: 191 GPGAAQTLNGSAA---LLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAA 247
Query: 51 APPPP---HKMAAPIEETAAASPAP 72
APP P AAP AA+P P
Sbjct: 248 APPAPAAPSPPAAPAPAAPAAAPPP 272
Score = 26.9 bits (58), Expect = 3.6
Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
Query: 45 PRAPAAAPPPPHKMAAPIEETAAASP 70
P APAAAPPPP P T A P
Sbjct: 263 PAAPAAAPPPP----PPAPATLARPP 284
Score = 26.2 bits (56), Expect = 6.1
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Query: 8 GPGCADSLNAALAHSPLRNRQCRGFPGGGHSIQP----LYTPRAPAAAPPPPHKMAAPIE 63
G G A A +P R PGGG +P P PA PP K+ P E
Sbjct: 72 GAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPE 131
Query: 64 ETA-AASPAP 72
+A + +P P
Sbjct: 132 GSAGSCAPVP 141
>gi|116292174 fidgetin-like 2 [Homo sapiens]
Length = 653
Score = 30.4 bits (67), Expect = 0.32
Identities = 23/78 (29%), Positives = 29/78 (37%), Gaps = 14/78 (17%)
Query: 32 FPGGGHSIQPLYTPRAPAAAPPPPHKMAAPIEETAAASPAPFCGRREICQHGKPLLRMHP 91
+P GG++ QP Y A PPPP AP +P P +G P
Sbjct: 205 YPAGGYAAQPGY-----GALPPPPGPPPAPYLTPGLPAPTPLPAPAPPTAYGFP------ 253
Query: 92 SLETPLKGWSLGDHIKRK 109
T G G +KRK
Sbjct: 254 ---TAAPGAESGLSLKRK 268
>gi|153070260 myristoylated alanine-rich protein kinase C substrate
[Homo sapiens]
Length = 332
Score = 30.4 bits (67), Expect = 0.32
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 47 APAAAPP--PPHKMAAPIEETAAASPAPFC 74
AP+AA P PP + AAP EE AAA+ + C
Sbjct: 281 APSAAGPGAPPEQEAAPAEEPAAAAASSAC 310
>gi|151301053 RNA binding motif protein 33 [Homo sapiens]
Length = 1170
Score = 30.4 bits (67), Expect = 0.32
Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 40 QPLYTPRAPAAAPPPPHKMAAPIEETAAASPAPFCGRREICQHGKPLLRMH--PSLETP 96
QP P+AP PPPP + PI P + H P MH P LETP
Sbjct: 312 QPPVVPQAPPPPPPPPQQQ--PIRSLFQPQPLQPLLPVQHPHHPSPPQGMHMPPQLETP 368
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,684,415
Number of Sequences: 37866
Number of extensions: 407468
Number of successful extensions: 4211
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 225
Number of HSP's that attempted gapping in prelim test: 3392
Number of HSP's gapped (non-prelim): 959
length of query: 120
length of database: 18,247,518
effective HSP length: 89
effective length of query: 31
effective length of database: 14,877,444
effective search space: 461200764
effective search space used: 461200764
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.