Guide to the Human Genome
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Name: LOC728804 Sequence: fasta or formatted (194aa) NCBI GI: 169210192
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {194aa} PREDICTED: hypothetical protein
alt prot {231aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         17           1
 C cysteine            3.1          6           1
 D aspartate           3.6          7           1
 E glutamate           4.6          9           2
 F phenylalanine       1.0          2           1
 G glycine            10.8         21           4
 H histidine           0.5          1           1
 I isoleucine          1.0          2           1
 K lysine              2.1          4           1
 L leucine            10.8         21           3
 M methionine          1.0          2           1
 N asparagine          2.6          5           1
 P proline            16.5         32           2
 Q glutamine           4.6          9           1
 R arginine           10.8         21           3
 S serine              6.2         12           2
 T threonine           6.2         12           1
 V valine              4.1          8           1
 W tryptophan          1.5          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC728804             0.977   PREDICTED: hypothetical protein 
LOC400553             0.543   PREDICTED: FLJ44904 protein 
GGN                   0.052   gametogenetin 
APBB1IP               0.049   amyloid beta (A4) precursor protein-binding, family ...
C10orf95              0.044   hypothetical protein LOC79946 
DIAPH1                0.042   diaphanous 1 isoform 2 
DIAPH1                0.042   diaphanous 1 isoform 1 
LOC100130360          0.042   PREDICTED: hypothetical protein 
PRR12                 0.039   proline rich 12 
FLJ22184              0.036   PREDICTED: hypothetical protein LOC80164 
KDM6B                 0.036   lysine (K)-specific demethylase 6B 
MAST3                 0.036   microtubule associated serine/threonine kinase 3 [H...
CPSF6                 0.036   cleavage and polyadenylation specific factor 6, 68 ...
LOC100127891          0.036   PREDICTED: similar to hCG2042508 
LOC100127891          0.036   PREDICTED: similar to hCG2042508 
LOC100127891          0.036   PREDICTED: similar to hCG2042508 
WIPF3                 0.036   WAS/WASL interacting protein family, member 3 [Homo...
ANKRD43               0.036   ankyrin repeat domain 43 
EN1                   0.036   engrailed homeobox 1 
SYN1                  0.036   synapsin I isoform Ib 
LOC100292589          0.034   PREDICTED: hypothetical protein 
LOC100290121          0.034   PREDICTED: hypothetical protein XP_002346879 
LOC100289406          0.034   PREDICTED: hypothetical protein XP_002342721 
LOC100288963          0.034   PREDICTED: hypothetical protein XP_002342546 
SYN1                  0.034   synapsin I isoform Ia 
ADAMTS14              0.034   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS14              0.034   ADAM metallopeptidase with thrombospondin type 1 mo...
SF3A2                 0.031   splicing factor 3a, subunit 2 
MYO15A                0.031   myosin XV 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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