Guide to the Human Genome
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Name: CCDC64B Sequence: fasta or formatted (508aa) NCBI GI: 157042792
Description:

coiled-coil domain containing 64B

Referenced in:

Coiled-Coil Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6         49           2
 C cysteine            0.2          1           1
 D aspartate           4.5         23           2
 E glutamate          14.2         72           3
 F phenylalanine       1.6          8           2
 G glycine             6.5         33           3
 H histidine           1.2          6           1
 I isoleucine          1.2          6           1
 K lysine              2.8         14           2
 L leucine            15.6         79           4
 M methionine          0.8          4           1
 N asparagine          1.4          7           1
 P proline             4.7         24           2
 Q glutamine           9.6         49           2
 R arginine           11.2         57           2
 S serine              9.4         48           3
 T threonine           2.6         13           2
 V valine              2.6         13           2
 W tryptophan          0.4          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   coiled-coil domain containing 64B 
CCDC64                0.244   coiled-coil domain containing 64 
MYH14                 0.072   myosin, heavy chain 14 isoform 1 
MYH14                 0.072   myosin, heavy chain 14 isoform 2 
MYH14                 0.072   myosin, heavy chain 14 isoform 3 
MYH7B                 0.070   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
MYH15                 0.069   myosin, heavy polypeptide 15 
CGNL1                 0.067   cingulin-like 1 
CEP250                0.062   centrosomal protein 2 
TCHH                  0.061   trichohyalin 
PLEC1                 0.061   plectin 1 isoform 11 
PLEC1                 0.061   plectin 1 isoform 10 
PLEC1                 0.061   plectin 1 isoform 8 
PLEC1                 0.061   plectin 1 isoform 7 
PLEC1                 0.061   plectin 1 isoform 6 
PLEC1                 0.061   plectin 1 isoform 3 
PLEC1                 0.061   plectin 1 isoform 2 
PLEC1                 0.061   plectin 1 isoform 1 
CROCC                 0.060   ciliary rootlet coiled-coil 
CCDC88B               0.058   coiled-coil domain containing 88 
MYH11                 0.058   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.058   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.058   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.058   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
MYH8                  0.057   myosin, heavy chain 8, skeletal muscle, perinatal [...
AKAP9                 0.057   A-kinase anchor protein 9 isoform 3 
MYH3                  0.056   myosin, heavy chain 3, skeletal muscle, embryonic [H...
MYH10                 0.056   myosin, heavy polypeptide 10, non-muscle 
LOC100133758          0.055   PREDICTED: hypothetical protein, partial 
CGN                   0.055   cingulin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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