Guide to the Human Genome
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Name: LOC728804 Sequence: fasta or formatted (194aa) NCBI GI: 113425957
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {194aa} PREDICTED: hypothetical protein
alt prot {231aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         17           1
 C cysteine            3.6          7           1
 D aspartate           3.6          7           1
 E glutamate           4.6          9           2
 F phenylalanine       1.0          2           1
 G glycine            10.8         21           4
 H histidine           0.5          1           1
 I isoleucine          1.0          2           1
 K lysine              2.1          4           1
 L leucine            10.8         21           3
 M methionine          1.0          2           1
 N asparagine          2.6          5           1
 P proline            16.5         32           2
 Q glutamine           4.6          9           1
 R arginine           10.3         20           3
 S serine              6.2         12           1
 T threonine           6.2         12           1
 V valine              4.1          8           1
 W tryptophan          1.5          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC728804             0.972   PREDICTED: hypothetical protein 
LOC400553             0.543   PREDICTED: FLJ44904 protein 
GGN                   0.052   gametogenetin 
APBB1IP               0.052   amyloid beta (A4) precursor protein-binding, family ...
C10orf95              0.044   hypothetical protein LOC79946 
FLJ22184              0.041   PREDICTED: hypothetical protein LOC80164 
MAST3                 0.041   microtubule associated serine/threonine kinase 3 [H...
DIAPH1                0.041   diaphanous 1 isoform 2 
DIAPH1                0.041   diaphanous 1 isoform 1 
WIPF3                 0.041   WAS/WASL interacting protein family, member 3 [Homo...
CPSF6                 0.039   cleavage and polyadenylation specific factor 6, 68 ...
KDM6B                 0.039   lysine (K)-specific demethylase 6B 
PRR12                 0.039   proline rich 12 
ANKRD43               0.036   ankyrin repeat domain 43 
LOC100127891          0.036   PREDICTED: similar to hCG2042508 
LOC100127891          0.036   PREDICTED: similar to hCG2042508 
LOC100127891          0.036   PREDICTED: similar to hCG2042508 
MYO15A                0.036   myosin XV 
SF3A2                 0.036   splicing factor 3a, subunit 2 
LOC100292589          0.034   PREDICTED: hypothetical protein 
LOC100290121          0.034   PREDICTED: hypothetical protein XP_002346879 
LOC100289406          0.034   PREDICTED: hypothetical protein XP_002342721 
PRB2                  0.034   proline-rich protein BstNI subfamily 2 
NHSL1                 0.034   NHS-like 1 
PAWR                  0.034   PRKC, apoptosis, WT1, regulator 
ATXN2                 0.034   ataxin 2 
SYN1                  0.034   synapsin I isoform Ib 
CCNK                  0.034   cyclin K isoform 1 
EN1                   0.031   engrailed homeobox 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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