SP100 11629

Name: SP100	Sequence: fasta or formatted (879aa)		NCBI GI: 19923236
Description: nuclear antigen Sp100 isoform 2		Referenced in: Ets Family Nonhistone Chromosomal Proteins Nucleus and Nucleolus PHD Finger Proteins
Other entries for this name: alt prot [885aa] nuclear antigen Sp100 isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.0 44 3 C cysteine 2.3 20 1 D aspartate 5.9 52 3 E glutamate 11.1 98 4 F phenylalanine 3.8 33 2 G glycine 5.0 44 4 H histidine 2.4 21 2 I isoleucine 3.6 32 2 K lysine 11.3 99 4 L leucine 6.0 53 2 M methionine 1.8 16 2 N asparagine 5.1 45 2 P proline 6.0 53 2 Q glutamine 4.1 36 2 R arginine 6.8 60 3 S serine 9.0 79 3 T threonine 4.3 38 2 V valine 4.2 37 2 W tryptophan 0.8 7 1 Y tyrosine 1.4 12 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 nuclear antigen Sp100 isoform 2 SP100 0.792 nuclear antigen Sp100 isoform 1 SP140 0.181 SP140 nuclear body protein isoform 1 HMGB1 0.168 high-mobility group box 1 HMGB1L1 0.160 high-mobility group box 1-like 1 SP140L 0.147 SP140 nuclear body protein-like LOC645490 0.138 PREDICTED: similar to hCG1991922 LOC645490 0.136 PREDICTED: similar to hCG1991922 LOC645490 0.136 PREDICTED: similar to hCG1991922 HMGB2 0.136 high-mobility group box 2 HMGB2 0.136 high-mobility group box 2 HMGB2 0.136 high-mobility group box 2 HMGB3 0.117 high-mobility group box 3 LOC646993 0.109 PREDICTED: similar to high mobility group box 3 [Ho... LOC646993 0.109 PREDICTED: similar to high mobility group box 3 [Ho... LOC646993 0.109 PREDICTED: similar to high mobility group box 3 [Ho... SP110 0.102 SP110 nuclear body protein isoform b SP110 0.099 SP110 nuclear body protein isoform a SP110 0.099 SP110 nuclear body protein isoform c LOC441795 0.099 PREDICTED: high mobility group protein B3-like prot... LOC441795 0.099 PREDICTED: high mobility group protein B3-like prot... LOC203510 0.097 PREDICTED: similar to hCG1644442 LOC203510 0.097 PREDICTED: similar to hCG1644442 LOC203510 0.097 PREDICTED: hypothetical protein LOC203510 LOC729595 0.091 PREDICTED: similar to high mobility group box 3 [Ho... LOC729595 0.091 PREDICTED: similar to high mobility group box 3 [Ho... LOC729595 0.091 PREDICTED: similar to high mobility group box 3 iso... LOC644129 0.086 PREDICTED: similar to hCG1647425 LOC644129 0.086 PREDICTED: similar to hCG1647425 LOC729595 0.084 PREDICTED: similar to high mobility group box 3 iso... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.