Guide to the Human Genome
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Name: HMGB4 Sequence: fasta or formatted (186aa) NCBI GI: 57232750
Description:

HMG2 like isoform 1

Referenced in:

Nonhistone Chromosomal Proteins

Other entries for this name:
alt prot [112aa] HMG2 like isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         13           1
 C cysteine            2.2          4           1
 D aspartate           2.2          4           1
 E glutamate           8.1         15           2
 F phenylalanine       3.8          7           1
 G glycine             2.7          5           1
 H histidine           2.2          4           1
 I isoleucine          1.1          2           1
 K lysine             14.0         26           2
 L leucine             7.0         13           2
 M methionine          2.7          5           2
 N asparagine          4.8          9           1
 P proline             4.3          8           2
 Q glutamine           5.9         11           2
 R arginine           11.3         21           2
 S serine              6.5         12           2
 T threonine           2.2          4           1
 V valine              4.8          9           2
 W tryptophan          1.6          3           1
 Y tyrosine            5.9         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   HMG2 like isoform 1 
HMGB4                 0.583   HMG2 like isoform 2 
HMGB2                 0.375   high-mobility group box 2 
HMGB2                 0.375   high-mobility group box 2 
HMGB2                 0.375   high-mobility group box 2 
HMGB1                 0.350   high-mobility group box 1 
HMGB3                 0.331   high-mobility group box 3 
LOC441795             0.319   PREDICTED: high mobility group protein B3-like prot...
LOC441795             0.319   PREDICTED: high mobility group protein B3-like prot...
HMGB1L1               0.317   high-mobility group box 1-like 1 
LOC646993             0.278   PREDICTED: similar to high mobility group box 3 [Ho...
LOC646993             0.278   PREDICTED: similar to high mobility group box 3 [Ho...
LOC646993             0.278   PREDICTED: similar to high mobility group box 3 [Ho...
LOC729595             0.269   PREDICTED: similar to high mobility group box 3 [Ho...
LOC729595             0.269   PREDICTED: similar to high mobility group box 3 [Ho...
LOC729595             0.269   PREDICTED: similar to high mobility group box 3 iso...
LOC203510             0.267   PREDICTED: similar to hCG1644442 
LOC203510             0.267   PREDICTED: similar to hCG1644442 
LOC203510             0.267   PREDICTED: hypothetical protein LOC203510 
SP100                 0.264   nuclear antigen Sp100 isoform 2 
LOC645490             0.242   PREDICTED: similar to hCG1991922 
LOC645490             0.242   PREDICTED: similar to hCG1991922 
LOC645490             0.242   PREDICTED: similar to hCG1991922 
LOC729595             0.217   PREDICTED: similar to high mobility group box 3 iso...
LOC644129             0.131   PREDICTED: similar to hCG1647425 
LOC644129             0.131   PREDICTED: similar to hCG1647425 
TOX4                  0.114   epidermal Langerhans cell protein LCP1 
TOX3                  0.111   TOX high mobility group box family member 3 isoform...
TOX3                  0.111   TOX high mobility group box family member 3 isoform...
TOX                   0.111   thymus high mobility group box protein TOX 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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