Guide to the Human Genome
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Name: ABCC6 Sequence: fasta or formatted (1503aa) NCBI GI: 190343023
Description:

ATP-binding cassette, sub-family C, member 6 isoform 1

Referenced in:

ATP-binding Cassette Proteins

Other entries for this name:
alt prot [99aa] URG7 protein isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9        149           3
 C cysteine            1.9         28           1
 D aspartate           3.4         51           2
 E glutamate           4.7         71           2
 F phenylalanine       4.6         69           2
 G glycine             7.4        111           2
 H histidine           1.9         29           3
 I isoleucine          3.7         56           2
 K lysine              3.3         50           2
 L leucine            14.0        210           2
 M methionine          1.5         23           1
 N asparagine          2.0         30           2
 P proline             5.2         78           2
 Q glutamine           5.6         84           2
 R arginine            5.9         89           2
 S serine              7.7        116           4
 T threonine           4.5         68           2
 V valine              8.6        129           2
 W tryptophan          2.3         35           2
 Y tyrosine            1.8         27           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATP-binding cassette, sub-family C, member 6 isofor... 
LOC100292715          0.859   PREDICTED: hypothetical protein 
ABCC1                 0.430   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC1                 0.390   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC1                 0.389   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC3                 0.387   ATP-binding cassette, sub-family C, member 3 isoform ...
ABCC1                 0.370   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC2                 0.329   ATP-binding cassette, sub-family C (CFTR/MRP), member...
ABCC4                 0.219   ATP-binding cassette, sub-family C, member 4 isofor...
ABCC1                 0.207   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC9                 0.198   ATP-binding cassette, sub-family C, member 9 isofor...
ABCC8                 0.197   ATP-binding cassette, sub-family C, member 8 
ABCC10                0.195   ATP-binding cassette, sub-family C, member 10 
ABCC9                 0.194   ATP-binding cassette, sub-family C, member 9 isofor...
ABCC9                 0.194   ATP-binding cassette, sub-family C, member 9 isofor...
ABCC12                0.189   ATP-binding cassette protein C12 
ABCC11                0.184   ATP-binding cassette, sub-family C, member 11 isofor...
ABCC11                0.184   ATP-binding cassette, sub-family C, member 11 isofor...
ABCC5                 0.171   ATP-binding cassette, sub-family C, member 5 isoform...
ABCC11                0.167   ATP-binding cassette, sub-family C, member 11 isofor...
ABCC3                 0.116   ATP-binding cassette, sub-family C, member 3 isofor...
ABCC4                 0.114   ATP-binding cassette, sub-family C, member 4 isofor...
CFTR                  0.077   cystic fibrosis transmembrane conductance regulator ...
ABCB1                 0.069   ATP-binding cassette, subfamily B, member 1 
ABCB11                0.066   ATP-binding cassette, sub-family B (MDR/TAP), member...
ABCB10                0.047   ATP-binding cassette, sub-family B, member 10 [Homo...
TAP1                  0.046   transporter 1, ATP-binding cassette, sub-family B [Ho...
ABCC6                 0.046   URG7 protein isoform 2 
TAP2                  0.043   transporter 2, ATP-binding cassette, sub-family B is...
ABCB9                 0.040   ATP-binding cassette, sub-family B (MDR/TAP), member ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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