Guide to the Human Genome
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Name: LOC100292715 Sequence: fasta or formatted (1312aa) NCBI GI: 239756495
Description:

PREDICTED: hypothetical protein

Referenced in:

ATP-binding Cassette Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9        130           3
 C cysteine            1.7         22           1
 D aspartate           3.7         48           2
 E glutamate           4.9         64           2
 F phenylalanine       4.4         58           2
 G glycine             7.5         98           2
 H histidine           1.7         22           2
 I isoleucine          3.8         50           2
 K lysine              3.5         46           2
 L leucine            13.9        183           2
 M methionine          1.4         19           1
 N asparagine          2.1         28           2
 P proline             4.6         61           2
 Q glutamine           5.6         74           2
 R arginine            6.3         83           2
 S serine              7.9        103           4
 T threonine           4.6         60           2
 V valine              8.5        111           2
 W tryptophan          2.2         29           2
 Y tyrosine            1.8         23           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
ABCC6                 0.991   ATP-binding cassette, sub-family C, member 6 isofor...
ABCC1                 0.445   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC3                 0.400   ATP-binding cassette, sub-family C, member 3 isoform ...
ABCC1                 0.399   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC1                 0.398   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC1                 0.375   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC2                 0.366   ATP-binding cassette, sub-family C (CFTR/MRP), member...
ABCC4                 0.254   ATP-binding cassette, sub-family C, member 4 isofor...
ABCC1                 0.238   ATP-binding cassette, sub-family C, member 1 isofor...
ABCC8                 0.228   ATP-binding cassette, sub-family C, member 8 
ABCC9                 0.228   ATP-binding cassette, sub-family C, member 9 isofor...
ABCC10                0.223   ATP-binding cassette, sub-family C, member 10 
ABCC9                 0.223   ATP-binding cassette, sub-family C, member 9 isofor...
ABCC9                 0.223   ATP-binding cassette, sub-family C, member 9 isofor...
ABCC12                0.217   ATP-binding cassette protein C12 
ABCC11                0.212   ATP-binding cassette, sub-family C, member 11 isofor...
ABCC11                0.212   ATP-binding cassette, sub-family C, member 11 isofor...
ABCC5                 0.197   ATP-binding cassette, sub-family C, member 5 isoform...
ABCC11                0.192   ATP-binding cassette, sub-family C, member 11 isofor...
ABCC4                 0.131   ATP-binding cassette, sub-family C, member 4 isofor...
CFTR                  0.089   cystic fibrosis transmembrane conductance regulator ...
ABCC3                 0.088   ATP-binding cassette, sub-family C, member 3 isofor...
ABCB1                 0.079   ATP-binding cassette, subfamily B, member 1 
ABCB11                0.076   ATP-binding cassette, sub-family B (MDR/TAP), member...
TAP1                  0.054   transporter 1, ATP-binding cassette, sub-family B [Ho...
ABCB10                0.054   ATP-binding cassette, sub-family B, member 10 [Homo...
TAP2                  0.050   transporter 2, ATP-binding cassette, sub-family B is...
ABCB9                 0.046   ATP-binding cassette, sub-family B (MDR/TAP), member ...
ABCB9                 0.046   ATP-binding cassette, sub-family B (MDR/TAP), member...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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