Guide to the Human Genome
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Name: MT1B Sequence: fasta or formatted (61aa) NCBI GI: 27414495
Description:

metallothionein 1B

Referenced in:

Metallothioneins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2          5           1
 C cysteine           34.4         21           3
 D aspartate           1.6          1           1
 E glutamate           3.3          2           1
 F phenylalanine       0.0          0           0
 G glycine             9.8          6           2
 H histidine           0.0          0           0
 I isoleucine          0.0          0           0
 K lysine             13.1          8           2
 L leucine             0.0          0           0
 M methionine          1.6          1           1
 N asparagine          1.6          1           1
 P proline             3.3          2           1
 Q glutamine           1.6          1           1
 R arginine            1.6          1           1
 S serine             11.5          7           2
 T threonine           4.9          3           2
 V valine              3.3          2           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   metallothionein 1B 
MT1E                  0.914   metallothionein 1E 
MT1H                  0.891   metallothionein 1H 
MT1A                  0.875   metallothionein 1A 
MT1X                  0.875   metallothionein 1X 
MT2A                  0.867   metallothionein 2A 
MT1M                  0.859   metallothionein 1M 
MT1G                  0.852   metallothionein 1G 
MT1F                  0.852   metallothionein 1F 
MT3                   0.617   metallothionein 3 
MT4                   0.609   metallothionein 4 
KRTAP5-9              0.211   keratin associated protein 5-9 
KRTAP5-1              0.203   keratin associated protein 5-1 
KRTAP5-10             0.195   keratin associated protein 5-10 
KRTAP5-3              0.195   keratin associated protein 5-3 
KRTAP5-8              0.195   keratin associated protein 5-8 
KRTAP5-7              0.188   keratin associated protein 5-7 
KRTAP5-4              0.188   keratin associated protein 5-4 
KRTAP5-2              0.180   keratin associated protein 5-2 
KRTAP5-11             0.172   keratin associated protein 5-11 
KRTAP5-6              0.172   keratin associated protein 5-6 
KRTAP5-5              0.148   keratin associated protein 5-5 
KRTAP4-3              0.133   keratin associated protein 4-3 
KRTAP10-11            0.125   keratin associated protein 10-11 
KRTAP4-4              0.125   keratin associated protein 4.4 
KRTAP17-1             0.117   keratin associated protein 17-1 
KRTAP10-9             0.117   keratin associated protein 10-9 
LAMA5                 0.117   laminin alpha 5 
KRTAP10-1             0.109   keratin associated protein 10-1 
KRTAP10-2             0.109   keratin associated protein 10-2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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