Guide to the Human Genome
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Name: MT1F Sequence: fasta or formatted (61aa) NCBI GI: 28866947
Description:

metallothionein 1F

Referenced in:

Metallothioneins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2          5           2
 C cysteine           32.8         20           2
 D aspartate           3.3          2           1
 E glutamate           3.3          2           1
 F phenylalanine       0.0          0           0
 G glycine             8.2          5           1
 H histidine           0.0          0           0
 I isoleucine          0.0          0           0
 K lysine             13.1          8           2
 L leucine             0.0          0           0
 M methionine          1.6          1           1
 N asparagine          1.6          1           1
 P proline             3.3          2           1
 Q glutamine           1.6          1           1
 R arginine            0.0          0           0
 S serine             14.8          9           1
 T threonine           3.3          2           1
 V valine              4.9          3           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   metallothionein 1F 
MT1G                  0.952   metallothionein 1G 
MT1E                  0.944   metallothionein 1E 
MT2A                  0.944   metallothionein 2A 
MT1A                  0.896   metallothionein 1A 
MT1H                  0.896   metallothionein 1H 
MT1B                  0.872   metallothionein 1B 
MT1X                  0.864   metallothionein 1X 
MT1M                  0.864   metallothionein 1M 
MT3                   0.656   metallothionein 3 
MT4                   0.616   metallothionein 4 
KRTAP5-3              0.216   keratin associated protein 5-3 
KRTAP5-7              0.208   keratin associated protein 5-7 
KRTAP5-9              0.200   keratin associated protein 5-9 
KRTAP5-8              0.192   keratin associated protein 5-8 
KRTAP5-10             0.168   keratin associated protein 5-10 
KRTAP5-11             0.160   keratin associated protein 5-11 
KRTAP5-6              0.160   keratin associated protein 5-6 
KRTAP5-1              0.160   keratin associated protein 5-1 
KRTAP5-5              0.160   keratin associated protein 5-5 
KRTAP5-4              0.160   keratin associated protein 5-4 
KRTAP4-3              0.152   keratin associated protein 4-3 
KRTAP5-2              0.144   keratin associated protein 5-2 
KRTAP17-1             0.144   keratin associated protein 17-1 
LOC729815             0.128   PREDICTED: hypothetical protein 
KRTAP10-11            0.120   keratin associated protein 10-11 
KRTAP10-2             0.120   keratin associated protein 10-2 
KRTAP4-4              0.120   keratin associated protein 4.4 
KRTAP4-8              0.120   PREDICTED: keratin associated protein 4-8 isoform 1...
LOC100134267          0.120   PREDICTED: similar to keratin associated protein 4-...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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