Guide to the Human Genome
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Name: TCF7L2 Sequence: fasta or formatted (442aa) NCBI GI: 226371627
Description:

transcription factor 7-like 2 isoform 6

Referenced in:

SOX Family
T cells

Other entries for this name:
alt prot [596aa] transcription factor 7-like 2 isoform 2
alt prot [489aa] transcription factor 7-like 2 isoform 3
alt prot [455aa] transcription factor 7-like 2 isoform 4
alt prot [579aa] transcription factor 7-like 2 isoform 5
alt prot [602aa] transcription factor 7-like 2 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         31           3
 C cysteine            0.2          1           1
 D aspartate           4.3         19           2
 E glutamate           6.8         30           3
 F phenylalanine       2.0          9           1
 G glycine             6.1         27           4
 H histidine           4.8         21           2
 I isoleucine          3.2         14           1
 K lysine              7.7         34           4
 L leucine             7.5         33           2
 M methionine          2.3         10           1
 N asparagine          3.4         15           1
 P proline            11.8         52           3
 Q glutamine           5.0         22           2
 R arginine            5.0         22           2
 S serine              9.3         41           3
 T threonine           4.8         21           2
 V valine              4.5         20           2
 W tryptophan          0.9          4           1
 Y tyrosine            3.6         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transcription factor 7-like 2 isoform 6 
TCF7L2                0.975   transcription factor 7-like 2 isoform 3 
TCF7L2                0.973   transcription factor 7-like 2 isoform 4 
TCF7L2                0.944   transcription factor 7-like 2 isoform 2 
TCF7L2                0.944   transcription factor 7-like 2 isoform 5 
TCF7L2                0.929   transcription factor 7-like 2 isoform 1 
TCF7L1                0.645   HMG-box transcription factor TCF-3 
LEF1                  0.479   lymphoid enhancer-binding factor 1 isoform 1 
LEF1                  0.439   lymphoid enhancer-binding factor 1 isoform 3 
LEF1                  0.419   lymphoid enhancer-binding factor 1 isoform 2 
TCF7                  0.313   transcription factor 7 (T-cell specific, HMG-box) is...
TCF7                  0.253   transcription factor 7 (T-cell specific, HMG-box) is...
TCF7                  0.253   transcription factor 7 (T-cell specific, HMG-box) is...
TCF7                  0.230   transcription factor 7 (T-cell specific, HMG-box) 6...
TCF7                  0.230   transcription factor 7 (T-cell specific, HMG-box) 5...
TCF7                  0.230   transcription factor 7 (T-cell specific, HMG-box) is...
TCF7                  0.230   transcription factor 7 (T-cell specific, HMG-box) is...
CIC                   0.056   capicua homolog 
SOX30                 0.052   SRY (sex determining region Y)-box 30 isoform b [Homo...
SOX30                 0.052   SRY (sex determining region Y)-box 30 isoform a [Hom...
SOX6                  0.046   SRY (sex determining region Y)-box 6 isoform 4 [Hom...
SOX6                  0.046   SRY (sex determining region Y)-box 6 isoform 3 [Hom...
SOX6                  0.046   SRY (sex determining region Y)-box 6 isoform 1 [Homo...
SOX6                  0.046   SRY (sex determining region Y)-box 6 isoform 2 [Homo...
SOX13                 0.043   SRY-box 13 
SOX5                  0.040   SRY (sex determining region Y)-box 5 isoform c [Homo...
SOX5                  0.040   SRY (sex determining region Y)-box 5 isoform b [Homo...
SOX5                  0.040   SRY (sex determining region Y)-box 5 isoform a [Homo...
SOX8                  0.039   SRY (sex determining region Y)-box 8 
SOX11                 0.038   SRY-box 11 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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