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Search of human proteins with 68534957
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|68534957 tubulin polyglutamylase complex subunit 2 [Homo
sapiens]
(300 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|68534957 tubulin polyglutamylase complex subunit 2 [Homo sapi... 619 e-177
gi|169172132 PREDICTED: similar to forkhead box L2 [Homo sapiens] 37 0.016
gi|239743053 PREDICTED: hypothetical protein XP_002342748 [Homo ... 37 0.016
gi|113419423 PREDICTED: similar to forkhead box L2 [Homo sapiens] 37 0.016
gi|118498339 EMI domain containing 2 [Homo sapiens] 37 0.021
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 36 0.047
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 34 0.18
gi|169171269 PREDICTED: similar to forkhead box L2 [Homo sapiens] 34 0.18
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 34 0.18
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 34 0.18
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 34 0.18
gi|18641360 collectin sub-family member 12 [Homo sapiens] 33 0.31
gi|48762934 alpha 2 type I collagen [Homo sapiens] 33 0.40
gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens] 33 0.40
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 32 0.68
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 32 0.89
gi|109689723 abl interactor 2 [Homo sapiens] 32 0.89
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 32 0.89
gi|34452686 ring finger protein, LIM domain interacting [Homo sa... 31 1.2
gi|34452684 ring finger protein, LIM domain interacting [Homo sa... 31 1.2
gi|19924103 synapsin II isoform IIa [Homo sapiens] 31 1.2
gi|67782356 corneodesmosin precursor [Homo sapiens] 31 1.5
gi|40807452 peroxisome proliferator-activated receptor gamma, co... 31 1.5
gi|16753207 ubiquilin 2 [Homo sapiens] 31 1.5
gi|7706457 A-kinase anchor protein 11 [Homo sapiens] 31 1.5
gi|95147559 ankyrin repeat domain 43 [Homo sapiens] 31 1.5
gi|27262645 ataxin 2 related protein isoform B [Homo sapiens] 31 1.5
gi|27262653 ataxin 2 related protein isoform E [Homo sapiens] 31 1.5
gi|27262649 ataxin 2 related protein isoform C [Homo sapiens] 31 1.5
gi|27262647 ataxin 2 related protein isoform A [Homo sapiens] 31 1.5
>gi|68534957 tubulin polyglutamylase complex subunit 2 [Homo
sapiens]
Length = 300
Score = 619 bits (1595), Expect = e-177
Identities = 300/300 (100%), Positives = 300/300 (100%)
Query: 1 MEEEASSPGLGCSKPHLEKLTLGITRILESSPGVTEVTIIEKPPAERHMISSWEQKNNCV 60
MEEEASSPGLGCSKPHLEKLTLGITRILESSPGVTEVTIIEKPPAERHMISSWEQKNNCV
Sbjct: 1 MEEEASSPGLGCSKPHLEKLTLGITRILESSPGVTEVTIIEKPPAERHMISSWEQKNNCV 60
Query: 61 MPEDVKNFYLMTNGFHMTWSVKLDEHIIPLGSMAINSISKLTQLTQSSMYSLPNAPTLAD 120
MPEDVKNFYLMTNGFHMTWSVKLDEHIIPLGSMAINSISKLTQLTQSSMYSLPNAPTLAD
Sbjct: 61 MPEDVKNFYLMTNGFHMTWSVKLDEHIIPLGSMAINSISKLTQLTQSSMYSLPNAPTLAD 120
Query: 121 LEDDTHEASDDQPEKPHFDSRSVIFELDSCNGSGKVCLVYKSGKPALAEDTEIWFLDRAL 180
LEDDTHEASDDQPEKPHFDSRSVIFELDSCNGSGKVCLVYKSGKPALAEDTEIWFLDRAL
Sbjct: 121 LEDDTHEASDDQPEKPHFDSRSVIFELDSCNGSGKVCLVYKSGKPALAEDTEIWFLDRAL 180
Query: 181 YWHFLTDTFTAYYRLLITHLGLPQWQYAFTSYGISPQAKQWFSMYKPITYNTNLLTEETD 240
YWHFLTDTFTAYYRLLITHLGLPQWQYAFTSYGISPQAKQWFSMYKPITYNTNLLTEETD
Sbjct: 181 YWHFLTDTFTAYYRLLITHLGLPQWQYAFTSYGISPQAKQWFSMYKPITYNTNLLTEETD 240
Query: 241 SFVNKLDPSKVFKSKNKIVIPKKKGPVQPAGGQKGPSGPSGPSTSSTSKSSSGSGNPTRK 300
SFVNKLDPSKVFKSKNKIVIPKKKGPVQPAGGQKGPSGPSGPSTSSTSKSSSGSGNPTRK
Sbjct: 241 SFVNKLDPSKVFKSKNKIVIPKKKGPVQPAGGQKGPSGPSGPSTSSTSKSSSGSGNPTRK 300
>gi|169172132 PREDICTED: similar to forkhead box L2 [Homo sapiens]
Length = 528
Score = 37.4 bits (85), Expect = 0.016
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 261 PKKKGPVQP-AGGQKGPSGPSGPSTSS--TSKSSSGSGNPTRK 300
PK++GP P AGG +GPSGPS P + + S+G G P R+
Sbjct: 429 PKREGPRGPRAGGAQGPSGPSEPPAAQGRLAPDSAGEGAPGRE 471
>gi|239743053 PREDICTED: hypothetical protein XP_002342748 [Homo
sapiens]
Length = 591
Score = 37.4 bits (85), Expect = 0.016
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 261 PKKKGPVQP-AGGQKGPSGPSGPSTSS--TSKSSSGSGNPTRK 300
PK++GP P AGG +GPSGPS P + + S+G G P R+
Sbjct: 492 PKREGPRGPRAGGAQGPSGPSEPPAAQGRLAPDSAGEGAPGRE 534
>gi|113419423 PREDICTED: similar to forkhead box L2 [Homo sapiens]
Length = 387
Score = 37.4 bits (85), Expect = 0.016
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 261 PKKKGPVQP-AGGQKGPSGPSGPSTSS--TSKSSSGSGNPTRK 300
PK++GP P AGG +GPSGPS P + + S+G G P R+
Sbjct: 196 PKREGPRGPRAGGAQGPSGPSEPPAAQGRLAPDSAGEGAPGRE 238
>gi|118498339 EMI domain containing 2 [Homo sapiens]
Length = 439
Score = 37.0 bits (84), Expect = 0.021
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 260 IPKKKGPVQPAG--GQKGPSGPSGPSTSSTSKSSSGSGNP 297
+P+++ P PAG GQ GP GP+GP S + +G P
Sbjct: 189 VPRQRRPTGPAGPPGQTGPPGPAGPPGSKGDRGQTGEKGP 228
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 35.8 bits (81), Expect = 0.047
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 261 PKKKGPVQPAGG-----QKGPSGPSGPSTSSTSKSSSGSGNPTRK 300
P ++GP+ PAGG Q G GP GP+ S+ G PT K
Sbjct: 1009 PGERGPLGPAGGIGLPGQSGSEGPVGPAGKKGSRGERGPPGPTGK 1053
Score = 28.9 bits (63), Expect = 5.8
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 265 GPVQPAG--GQKGPSGPSGPSTSSTSKSSSGSGNP 297
GP P G G GP G +GP SK S GS P
Sbjct: 1439 GPPGPIGSLGHPGPPGVAGPLGQKGSKGSPGSMGP 1473
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 33.9 bits (76), Expect = 0.18
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 261 PKKKGPVQPAG--GQKGPSGPSGPSTSSTSKSSSGSGNP 297
P GPV PAG G +G SGP+GP+ + S G+ P
Sbjct: 1049 PGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGP 1087
Score = 30.4 bits (67), Expect = 2.0
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 261 PKKKGPVQPAG--GQKGPSGPSGPSTSSTSKSSSGSGNP 297
P GP P G G+ GP GP GP+ K +G P
Sbjct: 599 PGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGP 637
Score = 30.0 bits (66), Expect = 2.6
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 261 PKKKGPVQPAG-----GQKGPSGPSGPSTSSTSKSSSGSGNP 297
P K GP PAG G G SGP G + K S G+ P
Sbjct: 899 PGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGP 940
Score = 30.0 bits (66), Expect = 2.6
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 9/43 (20%)
Query: 264 KGPVQPAG--------GQKGPSGPSGPSTSSTSKSSSGS-GNP 297
+GPV P+G G GP GP GP + + S GS G+P
Sbjct: 1139 RGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHP 1181
Score = 28.5 bits (62), Expect = 7.6
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 270 AGGQKGPSGPSGPSTSSTSKSSSGSGNP 297
A G GP GP GP+ S + SG P
Sbjct: 1045 APGHPGPPGPVGPAGKSGDRGESGPAGP 1072
>gi|169171269 PREDICTED: similar to forkhead box L2 [Homo sapiens]
Length = 632
Score = 33.9 bits (76), Expect = 0.18
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 261 PKKKGPVQP-AGGQKGPSGPS--GPSTSSTSKSSSGSGNPTRK 300
PK++GP P AGG +GPSGPS + + S+G G P R+
Sbjct: 134 PKREGPRGPRAGGAQGPSGPSELPAAQGRLAPDSAGEGAPGRE 176
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 33.9 bits (76), Expect = 0.18
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 272 GQKGPSGPSGPSTSSTSKSSSGSGNP 297
G +GPSGP GP+ S + ++GSG P
Sbjct: 917 GNEGPSGPPGPAGSPGERGAAGSGGP 942
Score = 30.4 bits (67), Expect = 2.0
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 255 KNKIVIPKKKGPVQPAGGQKGPSGPSGPSTSSTSKSSSGSGNP 297
K ++ IP GP+ P G P G GP+ +K ++G G P
Sbjct: 1357 KGEMGIPGASGPIGPGG----PPGLPGPAGPKGAKGATGPGGP 1395
Score = 28.1 bits (61), Expect = 9.9
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 260 IPKKKGPVQPAG--------GQKGPSGPSGPSTSSTSKSSSG 293
+P +KGP+ P G G GP+GP G + K G
Sbjct: 963 VPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVG 1004
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 33.9 bits (76), Expect = 0.18
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 272 GQKGPSGPSGPSTSSTSKSSSGSGNP 297
G +GPSGP GP+ S + ++GSG P
Sbjct: 896 GNEGPSGPPGPAGSPGERGAAGSGGP 921
Score = 30.4 bits (67), Expect = 2.0
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 255 KNKIVIPKKKGPVQPAGGQKGPSGPSGPSTSSTSKSSSGSGNP 297
K ++ IP GP+ P G P G GP+ +K ++G G P
Sbjct: 1336 KGEMGIPGASGPIGPGG----PPGLPGPAGPKGAKGATGPGGP 1374
Score = 28.1 bits (61), Expect = 9.9
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 260 IPKKKGPVQPAG--------GQKGPSGPSGPSTSSTSKSSSG 293
+P +KGP+ P G G GP+GP G + K G
Sbjct: 942 VPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVG 983
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 33.9 bits (76), Expect = 0.18
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 272 GQKGPSGPSGPSTSSTSKSSSGSGNP 297
G +GPSGP GP+ S + ++GSG P
Sbjct: 1003 GNEGPSGPPGPAGSPGERGAAGSGGP 1028
Score = 30.4 bits (67), Expect = 2.0
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 255 KNKIVIPKKKGPVQPAGGQKGPSGPSGPSTSSTSKSSSGSGNP 297
K ++ IP GP+ P G P G GP+ +K ++G G P
Sbjct: 1443 KGEMGIPGASGPIGPGG----PPGLPGPAGPKGAKGATGPGGP 1481
Score = 28.1 bits (61), Expect = 9.9
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 260 IPKKKGPVQPAG--------GQKGPSGPSGPSTSSTSKSSSG 293
+P +KGP+ P G G GP+GP G + K G
Sbjct: 1049 VPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVG 1090
>gi|18641360 collectin sub-family member 12 [Homo sapiens]
Length = 742
Score = 33.1 bits (74), Expect = 0.31
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 265 GPVQPAGGQKGPSGPSGPSTSSTSKSSSGSGNP 297
GP PAG ++GP GP+GP K S GS P
Sbjct: 476 GPPGPAG-ERGPIGPAGPPGERGGKGSKGSQGP 507
Score = 28.5 bits (62), Expect = 7.6
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 263 KKGPVQPAG-----GQKGPSGPSGPSTSSTSKSSSGSGNPT 298
++GP+ PAG G KG G GP S S G P+
Sbjct: 483 ERGPIGPAGPPGERGGKGSKGSQGPKGSRGSPGKPGPQGPS 523
Score = 28.1 bits (61), Expect = 9.9
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 255 KNKIVIPKKKGPVQPAG--GQKGPSGPSGPSTSSTSKSSSGSGNP 297
KN ++ GP P G G +GP GP+G K G P
Sbjct: 436 KNFTILQGPPGPRGPRGDRGSQGPPGPTGNKGQKGEKGEPGPPGP 480
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 32.7 bits (73), Expect = 0.40
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 261 PKKKGPVQPAG-----GQKGPSGPSGPSTSSTSKSSSG 293
P GPV PAG G+ GPSGP GP+ + + SG
Sbjct: 963 PGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGPRGPSG 1000
Score = 30.8 bits (68), Expect = 1.5
Identities = 16/33 (48%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 265 GPVQPAGGQKGPSGPSGPSTSSTSKSSSGSGNP 297
GPV PAG GP GPSGP K G P
Sbjct: 985 GPVGPAGAV-GPRGPSGPQGIRGDKGEPGEKGP 1016
Score = 28.5 bits (62), Expect = 7.6
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 9/45 (20%)
Query: 253 KSKNKIVIPKKKGPVQPAGGQKGPSGPSGPSTSSTSKSSSGSGNP 297
K +N +V P GPV A G GP+GP GP+ S G G P
Sbjct: 747 KGENGVVGPT--GPVG-AAGPAGPNGPPGPA------GSRGDGGP 782
Score = 28.1 bits (61), Expect = 9.9
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 261 PKKKGPVQPAGGQKGPSGPSGPSTSSTSKSSSGSGNP 297
P GPV AG GP GP GP+ ++ +G P
Sbjct: 951 PGNIGPVGAAGAP-GPHGPVGPAGKHGNRGETGPSGP 986
Score = 28.1 bits (61), Expect = 9.9
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 265 GPVQPAGGQKGPSGPSGPSTSSTSKSSSGSGNP 297
G V PAG +GP+GPSGP+ G+ P
Sbjct: 1045 GSVGPAG-PRGPAGPSGPAGKDGRTGHPGTVGP 1076
>gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens]
Length = 753
Score = 32.7 bits (73), Expect = 0.40
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 267 VQPAGGQKGPSGPSGPSTSSTSKSSSGSG 295
VQP+GG G SG G S+SS S + G+G
Sbjct: 393 VQPSGGGGGGSGGGGSSSSSNSSAGGGAG 421
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 32.0 bits (71), Expect = 0.68
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 261 PKKKGPVQPAG-----GQKGPSGPSGPSTSSTSKSSSGSGNP 297
P GPV PAG G+ GP+GP+GP ++ +G P
Sbjct: 1051 PGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGP 1092
Score = 31.2 bits (69), Expect = 1.2
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 265 GPVQPAG-----GQKGPSGPSGPSTSSTSKSSSGSGNP 297
GP PAG G+ GPSGP+GP+ + + G P
Sbjct: 770 GPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGP 807
Score = 30.0 bits (66), Expect = 2.6
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 260 IPKKKGPVQPAG-----GQKGPSGPSGPSTSSTSKSSSGS 294
+P G V PAG G +GP GP+GP+ + +GS
Sbjct: 600 VPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGS 639
Score = 28.9 bits (63), Expect = 5.8
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 261 PKKKGPVQPAGGQKGPSGPSGPSTSSTSKSSSG 293
P K+GP A G++GP GP GP + SG
Sbjct: 982 PGKQGP-SGASGERGPPGPMGPPGLAGPPGESG 1013
Score = 28.5 bits (62), Expect = 7.6
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 264 KGPVQPAG--GQKGPSGPSGPSTSSTSKSSSGS 294
+GP P G G++GPSG SGP+ S+G+
Sbjct: 1117 QGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGA 1149
Score = 28.1 bits (61), Expect = 9.9
Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 261 PKKKGPVQPAG--GQKGPSGPSGPSTSSTSKSSSGSGNP 297
P G V P G G GP GP GP+ K G P
Sbjct: 877 PGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGP 915
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 31.6 bits (70), Expect = 0.89
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 260 IPKKKGPVQPAGGQKGPSGPSGPSTSSTSKSSSGSGNPT 298
+P K G P G Q GP GP GP + S S G P+
Sbjct: 751 LPGKDGDTGPTGPQ-GPQGPRGPPGKNGSPGSPGEPGPS 788
Score = 28.9 bits (63), Expect = 5.8
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 260 IPKKKGPV-QPA----GGQKGPSGPSGPSTSSTSKSSSGS 294
+P + GP+ +P GG +GPSGP GP +K G+
Sbjct: 957 LPGRAGPMGEPGRPGQGGLEGPSGPIGPKGERGAKGDPGA 996
>gi|109689723 abl interactor 2 [Homo sapiens]
Length = 475
Score = 31.6 bits (70), Expect = 0.89
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 248 PSKVFKSKNKIVIPKKKGPVQPAG--------GQKGPSGPSGPSTSSTSKSSSGSGN 296
P+ S + + P ++ PV+ A G SG S PS+ S+S+ +SGSG+
Sbjct: 204 PNDYVPSPTRNMAPSQQSPVRTASVNQRNRTYSSSGSSGGSHPSSRSSSRENSGSGS 260
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 31.6 bits (70), Expect = 0.89
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 260 IPKKKGPVQPAGGQKGPSGPSGPSTSSTSKSSSGSGNPT 298
+P K G P G Q GP GP GP + S S G P+
Sbjct: 1304 LPGKDGDTGPTGPQ-GPQGPRGPPGKNGSPGSPGEPGPS 1341
Score = 29.6 bits (65), Expect = 3.4
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 257 KIVIPKKKGPVQPAG--GQKGPSGPSGP 282
+I P K GP P G G+ GP+GP GP
Sbjct: 736 EIGFPGKPGPPGPTGPPGKDGPNGPPGP 763
Score = 28.9 bits (63), Expect = 5.8
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 260 IPKKKGPV-QPA----GGQKGPSGPSGPSTSSTSKSSSGS 294
+P + GP+ +P GG +GPSGP GP +K G+
Sbjct: 1510 LPGRAGPMGEPGRPGQGGLEGPSGPIGPKGERGAKGDPGA 1549
>gi|34452686 ring finger protein, LIM domain interacting [Homo
sapiens]
Length = 624
Score = 31.2 bits (69), Expect = 1.2
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 210 TSYGISPQAKQWFSMYKPITYNTNLLTEETDSFVNKLDPSKVFKSKNKIVIPKKKGPVQP 269
TS I +Q + + ++Y + ++DS +P+ ++N + G
Sbjct: 398 TSVAIQTMLRQIMTGFGELSY---FMYSDSDS-----EPTGSVSNRNMERAESRSGRGGS 449
Query: 270 AGGQKGPSGPSGPSTSSTSKSSSGSGNPT 298
GG S S S+SS+S SSS S +P+
Sbjct: 450 GGGSSSGSSSSSSSSSSSSSSSSSSSSPS 478
>gi|34452684 ring finger protein, LIM domain interacting [Homo
sapiens]
Length = 624
Score = 31.2 bits (69), Expect = 1.2
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 210 TSYGISPQAKQWFSMYKPITYNTNLLTEETDSFVNKLDPSKVFKSKNKIVIPKKKGPVQP 269
TS I +Q + + ++Y + ++DS +P+ ++N + G
Sbjct: 398 TSVAIQTMLRQIMTGFGELSY---FMYSDSDS-----EPTGSVSNRNMERAESRSGRGGS 449
Query: 270 AGGQKGPSGPSGPSTSSTSKSSSGSGNPT 298
GG S S S+SS+S SSS S +P+
Sbjct: 450 GGGSSSGSSSSSSSSSSSSSSSSSSSSPS 478
>gi|19924103 synapsin II isoform IIa [Homo sapiens]
Length = 582
Score = 31.2 bits (69), Expect = 1.2
Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 14/52 (26%)
Query: 261 PKKKGPVQPAGGQ---------KGPSGPSGPSTSSTSKSSSGS-----GNPT 298
P + GP QP G Q + P GPS P +SS+S SSS S G PT
Sbjct: 454 PPQGGPGQPQGMQPPGKVLPPRRLPPGPSLPPSSSSSSSSSSSAPQRPGGPT 505
>gi|67782356 corneodesmosin precursor [Homo sapiens]
Length = 529
Score = 30.8 bits (68), Expect = 1.5
Identities = 22/58 (37%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 244 NKLDPSKVFKSKNKIVIPKKKGPVQPAGG----QKGPSGPSGPSTSSTSKSSSGSGNP 297
N + PS+ S P G VQ GG KGP PS S+S SS SG P
Sbjct: 354 NPIIPSQSAASSAIAFQPVGTGGVQLCGGGSTGSKGPCSPSSSRVPSSSSISSSSGLP 411
>gi|40807452 peroxisome proliferator-activated receptor gamma,
coactivator-related 1 [Homo sapiens]
Length = 1664
Score = 30.8 bits (68), Expect = 1.5
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 97 SISKLTQLTQSSM-YSLPNAPTLADLEDDTHEASDD 131
SIS L++L ++ Y LPN LA LED+ E DD
Sbjct: 301 SISSLSELVRAMHPYCLPNLTHLASLEDELQEQPDD 336
>gi|16753207 ubiquilin 2 [Homo sapiens]
Length = 624
Score = 30.8 bits (68), Expect = 1.5
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 265 GPVQPAGG--------QKGPSGPSGPSTSSTSKSSSGSGNPT 298
GPV P G GP GP GP+ + S+GSG PT
Sbjct: 493 GPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPT 534
Score = 29.3 bits (64), Expect = 4.4
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 265 GPVQPAG-----GQKGPSGPSGPSTSSTSKSSSGS 294
GP+ P G G G GP+GP+ SS + S + S
Sbjct: 514 GPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTS 548
>gi|7706457 A-kinase anchor protein 11 [Homo sapiens]
Length = 1901
Score = 30.8 bits (68), Expect = 1.5
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 100 KLTQLTQSSMYSLPNAPTLADLEDDTHEASDDQPEKPH 137
K++ + SS+ +LP+ P + + D E++ DQP K H
Sbjct: 1011 KVSMVHGSSLETLPSCPAVTGQKSDLKESAKDQPLKKH 1048
>gi|95147559 ankyrin repeat domain 43 [Homo sapiens]
Length = 549
Score = 30.8 bits (68), Expect = 1.5
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 242 FVNKLDPSKVFKSKNKIVIPKKKGPVQPAGGQKGPSG----PSGPSTSSTSKSSSGSGNP 297
FVN + K +V+ KK P +P GP G PS P+++ +S+S G P
Sbjct: 61 FVNNVAVVKELDGVKFVVLRKKPRPPEPEPAPFGPPGAAAQPSKPTSTVLPRSASAPGAP 120
>gi|27262645 ataxin 2 related protein isoform B [Homo sapiens]
Length = 1062
Score = 30.8 bits (68), Expect = 1.5
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 237 EETDSFVNKLDPSKVFKSKNKIVIPKK-KGPVQPAGGQKGPSGPSGPSTSSTSKSSSG 293
+E D + SK + V K+ K P+ P+GG +GP P P S T G
Sbjct: 581 KEVDGLLTSEPMGSPVSSKTESVSDKEDKPPLAPSGGTEGPEQPPPPCPSQTGSPPVG 638
>gi|27262653 ataxin 2 related protein isoform E [Homo sapiens]
Length = 1044
Score = 30.8 bits (68), Expect = 1.5
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 237 EETDSFVNKLDPSKVFKSKNKIVIPKK-KGPVQPAGGQKGPSGPSGPSTSSTSKSSSG 293
+E D + SK + V K+ K P+ P+GG +GP P P S T G
Sbjct: 581 KEVDGLLTSEPMGSPVSSKTESVSDKEDKPPLAPSGGTEGPEQPPPPCPSQTGSPPVG 638
>gi|27262649 ataxin 2 related protein isoform C [Homo sapiens]
Length = 1097
Score = 30.8 bits (68), Expect = 1.5
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 237 EETDSFVNKLDPSKVFKSKNKIVIPKK-KGPVQPAGGQKGPSGPSGPSTSSTSKSSSG 293
+E D + SK + V K+ K P+ P+GG +GP P P S T G
Sbjct: 581 KEVDGLLTSEPMGSPVSSKTESVSDKEDKPPLAPSGGTEGPEQPPPPCPSQTGSPPVG 638
>gi|27262647 ataxin 2 related protein isoform A [Homo sapiens]
Length = 1075
Score = 30.8 bits (68), Expect = 1.5
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 237 EETDSFVNKLDPSKVFKSKNKIVIPKK-KGPVQPAGGQKGPSGPSGPSTSSTSKSSSG 293
+E D + SK + V K+ K P+ P+GG +GP P P S T G
Sbjct: 581 KEVDGLLTSEPMGSPVSSKTESVSDKEDKPPLAPSGGTEGPEQPPPPCPSQTGSPPVG 638
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.130 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,420,622
Number of Sequences: 37866
Number of extensions: 645429
Number of successful extensions: 4093
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 3265
Number of HSP's gapped (non-prelim): 843
length of query: 300
length of database: 18,247,518
effective HSP length: 102
effective length of query: 198
effective length of database: 14,385,186
effective search space: 2848266828
effective search space used: 2848266828
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.