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Search of human proteins with 62739157
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|62739157 linker for activation of T cells isoform c [Homo
sapiens]
(232 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|62739157 linker for activation of T cells isoform c [Homo sap... 475 e-134
gi|239049118 linker for activation of T cells isoform d [Homo sa... 470 e-133
gi|62739155 linker for activation of T cells isoform b [Homo sap... 470 e-133
gi|7657293 linker for activation of T cells isoform a [Homo sapi... 455 e-128
gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sa... 40 0.001
gi|62000702 diacylglycerol kinase kappa [Homo sapiens] 39 0.003
gi|33946327 nucleoporin 214kDa [Homo sapiens] 39 0.004
gi|4505463 contactin associated protein 1 precursor [Homo sapiens] 39 0.004
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 39 0.004
gi|156119601 spermatogenesis and oogenesis specific basic helix-... 39 0.005
gi|156119603 spermatogenesis and oogenesis specific basic helix-... 38 0.008
gi|33286436 gametogenetin [Homo sapiens] 37 0.011
gi|33350928 disabled homolog 1 [Homo sapiens] 37 0.019
gi|55956788 nucleolin [Homo sapiens] 36 0.025
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens] 36 0.025
gi|21040314 SON DNA-binding protein isoform B [Homo sapiens] 36 0.025
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens] 36 0.032
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 36 0.032
gi|31652264 RNA binding motif protein 26 [Homo sapiens] 36 0.032
gi|40353729 Ras and Rab interactor 3 [Homo sapiens] 35 0.042
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 35 0.055
gi|41281612 zinc finger protein 828 [Homo sapiens] 35 0.055
gi|4759166 secreted phosphoprotein 1 isoform b [Homo sapiens] 35 0.071
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 35 0.071
gi|154426272 hypothetical protein LOC54540 [Homo sapiens] 35 0.071
gi|222352122 hypothetical protein LOC284297 [Homo sapiens] 34 0.093
gi|38788219 zinc finger protein 428 [Homo sapiens] 34 0.093
gi|149363685 hypothetical protein LOC23379 [Homo sapiens] 34 0.093
gi|11386183 WAS protein family, member 2 [Homo sapiens] 34 0.093
gi|217035107 pre-mRNA cleavage factor I, 59 kDa subunit isoform ... 34 0.093
>gi|62739157 linker for activation of T cells isoform c [Homo
sapiens]
Length = 232
Score = 475 bits (1222), Expect = e-134
Identities = 232/232 (100%), Positives = 232/232 (100%)
Query: 1 MEEAILVPCVLGLLLLPILAMLMALCVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPW 60
MEEAILVPCVLGLLLLPILAMLMALCVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPW
Sbjct: 1 MEEAILVPCVLGLLLLPILAMLMALCVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPW 60
Query: 61 PPAYPPVTSYPPLSQPDLLPIPSPQPLGGSHRTPSSRRDSDGANSVASYENEEPACEDAD 120
PPAYPPVTSYPPLSQPDLLPIPSPQPLGGSHRTPSSRRDSDGANSVASYENEEPACEDAD
Sbjct: 61 PPAYPPVTSYPPLSQPDLLPIPSPQPLGGSHRTPSSRRDSDGANSVASYENEEPACEDAD 120
Query: 121 EDEDDYHNPGYLVVLPDSTPATSTAAPSAPALSTPGIRDSAFSMESIDDYVNVPESGESA 180
EDEDDYHNPGYLVVLPDSTPATSTAAPSAPALSTPGIRDSAFSMESIDDYVNVPESGESA
Sbjct: 121 EDEDDYHNPGYLVVLPDSTPATSTAAPSAPALSTPGIRDSAFSMESIDDYVNVPESGESA 180
Query: 181 EASLDGSREYVNVSQELHPGAAKTEPAALSSQEAEEVEEEGAPDYENLQELN 232
EASLDGSREYVNVSQELHPGAAKTEPAALSSQEAEEVEEEGAPDYENLQELN
Sbjct: 181 EASLDGSREYVNVSQELHPGAAKTEPAALSSQEAEEVEEEGAPDYENLQELN 232
>gi|239049118 linker for activation of T cells isoform d [Homo
sapiens]
Length = 269
Score = 470 bits (1210), Expect = e-133
Identities = 232/233 (99%), Positives = 232/233 (99%), Gaps = 1/233 (0%)
Query: 1 MEEAILVPCVLGLLLLPILAMLMALCVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPW 60
MEEAILVPCVLGLLLLPILAMLMALCVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPW
Sbjct: 37 MEEAILVPCVLGLLLLPILAMLMALCVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPW 96
Query: 61 PPAYPPVTSYPPLSQPDLLPIP-SPQPLGGSHRTPSSRRDSDGANSVASYENEEPACEDA 119
PPAYPPVTSYPPLSQPDLLPIP SPQPLGGSHRTPSSRRDSDGANSVASYENEEPACEDA
Sbjct: 97 PPAYPPVTSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRDSDGANSVASYENEEPACEDA 156
Query: 120 DEDEDDYHNPGYLVVLPDSTPATSTAAPSAPALSTPGIRDSAFSMESIDDYVNVPESGES 179
DEDEDDYHNPGYLVVLPDSTPATSTAAPSAPALSTPGIRDSAFSMESIDDYVNVPESGES
Sbjct: 157 DEDEDDYHNPGYLVVLPDSTPATSTAAPSAPALSTPGIRDSAFSMESIDDYVNVPESGES 216
Query: 180 AEASLDGSREYVNVSQELHPGAAKTEPAALSSQEAEEVEEEGAPDYENLQELN 232
AEASLDGSREYVNVSQELHPGAAKTEPAALSSQEAEEVEEEGAPDYENLQELN
Sbjct: 217 AEASLDGSREYVNVSQELHPGAAKTEPAALSSQEAEEVEEEGAPDYENLQELN 269
>gi|62739155 linker for activation of T cells isoform b [Homo
sapiens]
Length = 233
Score = 470 bits (1210), Expect = e-133
Identities = 232/233 (99%), Positives = 232/233 (99%), Gaps = 1/233 (0%)
Query: 1 MEEAILVPCVLGLLLLPILAMLMALCVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPW 60
MEEAILVPCVLGLLLLPILAMLMALCVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPW
Sbjct: 1 MEEAILVPCVLGLLLLPILAMLMALCVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPW 60
Query: 61 PPAYPPVTSYPPLSQPDLLPIP-SPQPLGGSHRTPSSRRDSDGANSVASYENEEPACEDA 119
PPAYPPVTSYPPLSQPDLLPIP SPQPLGGSHRTPSSRRDSDGANSVASYENEEPACEDA
Sbjct: 61 PPAYPPVTSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRDSDGANSVASYENEEPACEDA 120
Query: 120 DEDEDDYHNPGYLVVLPDSTPATSTAAPSAPALSTPGIRDSAFSMESIDDYVNVPESGES 179
DEDEDDYHNPGYLVVLPDSTPATSTAAPSAPALSTPGIRDSAFSMESIDDYVNVPESGES
Sbjct: 121 DEDEDDYHNPGYLVVLPDSTPATSTAAPSAPALSTPGIRDSAFSMESIDDYVNVPESGES 180
Query: 180 AEASLDGSREYVNVSQELHPGAAKTEPAALSSQEAEEVEEEGAPDYENLQELN 232
AEASLDGSREYVNVSQELHPGAAKTEPAALSSQEAEEVEEEGAPDYENLQELN
Sbjct: 181 AEASLDGSREYVNVSQELHPGAAKTEPAALSSQEAEEVEEEGAPDYENLQELN 233
>gi|7657293 linker for activation of T cells isoform a [Homo
sapiens]
Length = 262
Score = 455 bits (1170), Expect = e-128
Identities = 232/262 (88%), Positives = 232/262 (88%), Gaps = 30/262 (11%)
Query: 1 MEEAILVPCVLGLLLLPILAMLMALCVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPW 60
MEEAILVPCVLGLLLLPILAMLMALCVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPW
Sbjct: 1 MEEAILVPCVLGLLLLPILAMLMALCVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPW 60
Query: 61 PPAYPPVTSYPPLSQPDLLPIP-SPQPLGGSHRTPSSRRDSDGANSVASYENE------- 112
PPAYPPVTSYPPLSQPDLLPIP SPQPLGGSHRTPSSRRDSDGANSVASYENE
Sbjct: 61 PPAYPPVTSYPPLSQPDLLPIPRSPQPLGGSHRTPSSRRDSDGANSVASYENEGASGIRG 120
Query: 113 ----------------------EPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAPSAP 150
EPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAPSAP
Sbjct: 121 AQAGWGVWGPSWTRLTPVSLPPEPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAPSAP 180
Query: 151 ALSTPGIRDSAFSMESIDDYVNVPESGESAEASLDGSREYVNVSQELHPGAAKTEPAALS 210
ALSTPGIRDSAFSMESIDDYVNVPESGESAEASLDGSREYVNVSQELHPGAAKTEPAALS
Sbjct: 181 ALSTPGIRDSAFSMESIDDYVNVPESGESAEASLDGSREYVNVSQELHPGAAKTEPAALS 240
Query: 211 SQEAEEVEEEGAPDYENLQELN 232
SQEAEEVEEEGAPDYENLQELN
Sbjct: 241 SQEAEEVEEEGAPDYENLQELN 262
>gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo
sapiens]
Length = 699
Score = 40.4 bits (93), Expect = 0.001
Identities = 41/167 (24%), Positives = 65/167 (38%), Gaps = 28/167 (16%)
Query: 65 PPVTSYPPLSQPDLLPIPSPQPLGGSHRTPSSRRDSDGANSVASYENEEPACEDADEDED 124
P VT+ P +P P QP+GG + + + DS + +S EE +
Sbjct: 391 PAVTTKSPAVKPAAAP---KQPVGGGQKLLTRKADSSSSEEESSSSEEEKTKK------- 440
Query: 125 DYHNPGYLVVLPDSTPATSTAAPSAPALSTP-GIRDSAFSMESIDDYVNVPESGESAEAS 183
+V AT+ AA S PA P G RDS+ +S ++ +SA
Sbjct: 441 --------MVATTKPKATAKAALSLPAKQAPQGSRDSSSDSDSSSSEEEEEKTSKSAVKK 492
Query: 184 LDGSREYVNVSQELHPGAAKTEPAALSSQEAEEVEEEGAPDYENLQE 230
Q++ GAA ++PA+ +AE + D +E
Sbjct: 493 KP---------QKVAGGAAPSKPASAKKGKAESSNSSSSDDSSEEEE 530
Score = 28.5 bits (62), Expect = 5.1
Identities = 35/153 (22%), Positives = 52/153 (33%), Gaps = 36/153 (23%)
Query: 33 PGSYDSTSSDSLYPRGIQFKRPHTVAPWPPAYPPVTSYPPL-----SQPDLLPIPSPQPL 87
P S+S DS + K+P P P + P S PP +QP + QP+
Sbjct: 260 PTRKSSSSEDSSSDEEEEQKKPMKNKPGPYSSVPPPSAPPPKKSLGTQPPKKAVEKQQPV 319
Query: 88 GGSHRTPSSRRDSDGANSVASYENEEPA-----------------------CEDADEDED 124
SS SD ++S + E + P D+D ED
Sbjct: 320 ------ESSEDSSDESDSSSEEEKKPPTKAVVSKATTKPPPAKKAAESSSDSSDSDSSED 373
Query: 125 DY--HNPGYLVVLPDSTPATSTAAPSAPALSTP 155
D P + PA +T +P+ + P
Sbjct: 374 DEAPSKPAGTTKNSSNKPAVTTKSPAVKPAAAP 406
>gi|62000702 diacylglycerol kinase kappa [Homo sapiens]
Length = 1271
Score = 39.3 bits (90), Expect = 0.003
Identities = 31/104 (29%), Positives = 39/104 (37%), Gaps = 11/104 (10%)
Query: 54 PHTVAPWPPAYPPVTSYPPLSQP---DLLPIPSPQPLGGSHRTPSSRRDSDGANSVASYE 110
P PWPP PP PP + P + P P P+P P S+ A + +
Sbjct: 24 PEPPPPWPPPPPPPA--PPPAPPLLSEASPEPIPEPCPELAPGPCPEATSESATELYTEP 81
Query: 111 NEEPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAPSAPALST 154
EPA E A E + P PAT A AP +T
Sbjct: 82 TPEPATEPASEPAPE------PATEPAPEPATEPAPEPAPEPAT 119
>gi|33946327 nucleoporin 214kDa [Homo sapiens]
Length = 2090
Score = 38.9 bits (89), Expect = 0.004
Identities = 44/168 (26%), Positives = 60/168 (35%), Gaps = 9/168 (5%)
Query: 61 PPAYPPVTSYPPLSQPDLLPIPSPQPLGGSHRTPS----SRRDSDGANSVASYENEEPAC 116
P A PP T+ PL P P S L S TPS + R ++ A S A E+P
Sbjct: 1452 PSAPPPTTAATPL--PTSFPTLSFGSLLSSATTPSLPMSAGRSTEEATSSAL--PEKPGD 1507
Query: 117 EDADEDEDDYHNPGYLVVLPDSTPATSTAAPSAPALSTPGIRDSAFSMESIDDYVNVPES 176
+ LP + P TS + P L+ P + +S + S E+
Sbjct: 1508 SEVSASAASLLEEQQSAQLPQAPPQTSDSVKKEPVLAQPAVSNSGTAASSTSLVALSAEA 1567
Query: 177 GESAEASLDGSREYVNVSQELH-PGAAKTEPAALSSQEAEEVEEEGAP 223
+ D E V + PG AA+SS VE P
Sbjct: 1568 TPATTGVPDARTEAVPPASSFSVPGQTAVTAAAISSAGPVAVETSSTP 1615
Score = 32.7 bits (73), Expect = 0.27
Identities = 52/191 (27%), Positives = 72/191 (37%), Gaps = 24/191 (12%)
Query: 33 PGSYDSTSSDSLYPRGIQFKRPHTVAPWPPAYPPVTSYPPLSQPDLLPIPSPQPLGGSHR 92
PGS +T + S P+ K + A P + PP + P++ LLP GG+
Sbjct: 431 PGSTPTTPTSSQAPQ----KLDASAAAAPASLPPSSPAAPIATFSLLPA------GGAPT 480
Query: 93 TPSSRRDSDGANSVASYENEEPACEDADEDEDDYHNPG---YLVVLPDS-----TPATST 144
S S S A+ E P+ + PG + V P TPA S
Sbjct: 481 VFSF--GSSSLKSSATVTGEPPSYSSGSDSSKAAPGPGPSTFSFVPPSKASLAPTPAASP 538
Query: 145 AAPSAPALSTPGIRDSAFSMESID-DYVNVPESGESAEASLDGSREYVNVSQELHPGAAK 203
APSA + S G ++ES V+ P S VN+S++ AA
Sbjct: 539 VAPSAASFSF-GSSGFKPTLESTPVPSVSAPNIAMKPSFPPSTSAVKVNLSEKF--TAAA 595
Query: 204 TEPAALSSQEA 214
T SSQ A
Sbjct: 596 TSTPVSSSQSA 606
>gi|4505463 contactin associated protein 1 precursor [Homo sapiens]
Length = 1384
Score = 38.9 bits (89), Expect = 0.004
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 4 AILVPCVLGLLLLPILAMLMALCVHCHRLPGSYDSTSSDSLYPRGIQFKRPHTVAPWP-- 61
AIL+ ++ LLL ++ ML+ + HR GSY + P+ P + P P
Sbjct: 1283 AILLGFLVAFLLLGLVGMLVLFYLQNHRYKGSYHTNE-----PKAAHEYHPGSKPPLPTS 1337
Query: 62 -PAYPPVTSYPPLSQPDLLPIPSPQP 86
PA P + P P P P+P P
Sbjct: 1338 GPAQVPTPTAAPNQAPASAPAPAPTP 1363
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 38.9 bits (89), Expect = 0.004
Identities = 49/200 (24%), Positives = 73/200 (36%), Gaps = 37/200 (18%)
Query: 54 PHTVAPWPPAYP-------------PVTSYPP---LSQPDLLPIPSPQPLGGSHRTPSSR 97
P +P PPA+ P TS P ++ P P P R
Sbjct: 2393 PPQPSPAPPAFTSCPAPEPFAELPAPATSLAPAPLITMPATRPKPKKARAAEESGAKGPR 2452
Query: 98 R-----------DSDGANSVASYENEEPACEDADEDEDDYHNPGYLVVLPDSTPATSTAA 146
R D +G S S + +E D + P L+ L PA ++
Sbjct: 2453 RPGEEAELLVKLDHEGVTSPKSKKAKEALLLREDPGAGGWQEPKSLLSLGSYPPAAGSSE 2512
Query: 147 PSAPALSTPGIRDSAFSME-----SIDDYVNVPESGESAEASLDGSREYVNVSQELHPGA 201
P AP P D + E + +D N P+S + A+A DG+ E + S G+
Sbjct: 2513 PKAP---WPKATDGDLAQEPGPGLTFEDSGN-PKSPDKAQAEQDGAEESES-SSSSSSGS 2567
Query: 202 AKTEPAALSSQEAEEVEEEG 221
+ + ++ SS E EEEG
Sbjct: 2568 SSSSSSSSSSGSETEGEEEG 2587
>gi|156119601 spermatogenesis and oogenesis specific basic
helix-loop-helix 1 isoform b [Homo sapiens]
Length = 328
Score = 38.5 bits (88), Expect = 0.005
Identities = 36/115 (31%), Positives = 48/115 (41%), Gaps = 17/115 (14%)
Query: 51 FKRPHTVAPWPP------AYPPVTSYPPLSQPDLLPIPSPQPLGGSHRTPSSRRDSDGAN 104
F P ++ PWPP A P S+PP SQ LP+ S + LG + G
Sbjct: 219 FSEPSSLVPWPPGRSLPKAVRPPLSWPPFSQQQTLPVMSGEALGWLGQA--------GPL 270
Query: 105 SVASYENEEPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAPSA-PALSTPGIR 158
++ + EPA ED ++ G V D T TA PS+ P PG R
Sbjct: 271 AMGAAPLGEPAKEDPMLAQEAGSALGSDV--DDGTSFLLTAGPSSWPGEWGPGFR 323
>gi|156119603 spermatogenesis and oogenesis specific basic
helix-loop-helix 1 isoform a [Homo sapiens]
Length = 387
Score = 37.7 bits (86), Expect = 0.008
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 51 FKRPHTVAPWPP------AYPPVTSYPPLSQPDLLPIPSPQPLG 88
F P ++ PWPP A P S+PP SQ LP+ S + LG
Sbjct: 219 FSEPSSLVPWPPGRSLPKAVRPPLSWPPFSQQQTLPVMSGEALG 262
>gi|33286436 gametogenetin [Homo sapiens]
Length = 652
Score = 37.4 bits (85), Expect = 0.011
Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 16/109 (14%)
Query: 46 PRGIQFKRPHTVAPWPPAYPPVTSYPPLSQPDLLPIPSPQPLGGSHRTPSSRRDSDGANS 105
P G+Q + P PP PP T PP QP LP+ P G H+ + + A
Sbjct: 431 PPGLQ-----ELPPLPPPTPPPTLQPPALQPTPLPVAPPLTPGLGHKESALAPTAAPALP 485
Query: 106 VASYENEEPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAPSAPALST 154
A ++ PA +P + + +P S AP+A + T
Sbjct: 486 PALAADQAPA-----------PSPAPAPTVAEPSPPVSAPAPAAAPIKT 523
>gi|33350928 disabled homolog 1 [Homo sapiens]
Length = 555
Score = 36.6 bits (83), Expect = 0.019
Identities = 41/166 (24%), Positives = 67/166 (40%), Gaps = 27/166 (16%)
Query: 32 LPGSYDSTSSDSLYPRGIQFKRPHTVAPWPPAYPPVTSYPPLSQPDLLPIPSPQPLGGSH 91
+PG+ DST S + Q T + A PP P+PS +P
Sbjct: 390 VPGTSDSTRSSPQTDKPRQKMGKETFKDFQMAQPP-------------PVPSRKP----- 431
Query: 92 RTPSSRRDSDGANSVASYENEEPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAPSAPA 151
PS S+ + +SY N+ +D D+ +D + L + +TP+T++ AP
Sbjct: 432 DQPSLTCTSE---AFSSYFNKVGVAQDTDDCDDFDISQLNLTPVTSTTPSTNSPPTPAPR 488
Query: 152 LSTPGIRDSAFSMESIDDYV-----NVPESGESAEASLDGSREYVN 192
S+P ++ + + D + P E EA DGS+ N
Sbjct: 489 QSSPSKSSASHASDPTTDDIFEEGFESPSKSEEQEAP-DGSQASSN 533
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 36.2 bits (82), Expect = 0.025
Identities = 36/140 (25%), Positives = 52/140 (37%), Gaps = 25/140 (17%)
Query: 88 GGSHRTPSSRRDSDGANSVASYENEEPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAP 147
G + + + DSD S E+EE ED DEDED+ PA AA
Sbjct: 133 GAKNGKNAKKEDSDEEEDDDSEEDEEDD-EDEDEDEDEIE------------PAAMKAAA 179
Query: 148 SAPALSTPGIRDSAFSMESIDDYVNVPESGESAEASLDGSREYVNVSQELHPGAAKTEPA 207
+APA E DD + + + + D E + + AAK P
Sbjct: 180 AAPA------------SEDEDDEDDEDDEDDDDDEEDDSEEEAMETTPAKGKKAAKVVPV 227
Query: 208 ALSSQEAEEVEEEGAPDYEN 227
+ +E EEE D ++
Sbjct: 228 KAKNVAEDEDEEEDDEDEDD 247
Score = 33.1 bits (74), Expect = 0.21
Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 6/99 (6%)
Query: 138 STPATSTAAPSAPALSTPGIRDSAFSMESIDDYVNV------PESGESAEASLDGSREYV 191
+TP A P ++TPG + +A + + N E + +E + +
Sbjct: 105 TTPGKKGATPGKALVATPGKKGAAIPAKGAKNGKNAKKEDSDEEEDDDSEEDEEDDEDED 164
Query: 192 NVSQELHPGAAKTEPAALSSQEAEEVEEEGAPDYENLQE 230
E+ P A K AA +S++ ++ ++E D ++ +E
Sbjct: 165 EDEDEIEPAAMKAAAAAPASEDEDDEDDEDDEDDDDDEE 203
>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
Length = 2426
Score = 36.2 bits (82), Expect = 0.025
Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 7/143 (4%)
Query: 35 SYDSTSSDSLYPRGIQFKRPHTVAPWPPAYPPVT-SYPPLSQPDLLPIPSPQ-PLGGSHR 92
SY T +++ + + P T+ P PP PP+T PP P+ +P+ Q L +
Sbjct: 1135 SYTDTYTEAYMVPPLPPEEPPTMPPLPPEEPPMTPPLPPEEPPEGPALPTEQSALTAENT 1194
Query: 93 TPSSRRDSDGANSVASYENEEPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAPSAPAL 152
P+ S SV+ EP ++ E Y V D + S AA + P
Sbjct: 1195 WPTEVPSSPSEESVS---QPEPPVSQSEISEPSAVPTDYSVSASDPSVLVSEAAVTVP-- 1249
Query: 153 STPGIRDSAFSMESIDDYVNVPE 175
P +S+ ++ ++ V E
Sbjct: 1250 EPPPEPESSITLTPVESAVVAEE 1272
>gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]
Length = 2303
Score = 36.2 bits (82), Expect = 0.025
Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 7/143 (4%)
Query: 35 SYDSTSSDSLYPRGIQFKRPHTVAPWPPAYPPVT-SYPPLSQPDLLPIPSPQ-PLGGSHR 92
SY T +++ + + P T+ P PP PP+T PP P+ +P+ Q L +
Sbjct: 1135 SYTDTYTEAYMVPPLPPEEPPTMPPLPPEEPPMTPPLPPEEPPEGPALPTEQSALTAENT 1194
Query: 93 TPSSRRDSDGANSVASYENEEPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAPSAPAL 152
P+ S SV+ EP ++ E Y V D + S AA + P
Sbjct: 1195 WPTEVPSSPSEESVS---QPEPPVSQSEISEPSAVPTDYSVSASDPSVLVSEAAVTVP-- 1249
Query: 153 STPGIRDSAFSMESIDDYVNVPE 175
P +S+ ++ ++ V E
Sbjct: 1250 EPPPEPESSITLTPVESAVVAEE 1272
>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
Length = 1970
Score = 35.8 bits (81), Expect = 0.032
Identities = 40/172 (23%), Positives = 58/172 (33%), Gaps = 15/172 (8%)
Query: 58 APWPPAYPPVT-SYPPLSQPDLLPI-PSPQPLGGSHRTPSSRRDSDGANSVASYENEEPA 115
+P P+Y P + SY P S P+ P P+ P S+ S N + N P
Sbjct: 1728 SPTSPSYSPTSPSYSPTS-PNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPT 1786
Query: 116 CEDADEDEDDYH--NPGYLVVLPDSTPATSTAAPSAPALSTPGIRDSAFSMESIDDYVNV 173
Y +P Y P TP + T PS+P+ S S S
Sbjct: 1787 SPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTS---------- 1836
Query: 174 PESGESAEASLDGSREYVNVSQELHPGAAKTEPAALSSQEAEEVEEEGAPDY 225
P+ ++ + S EY S + P + K P + P Y
Sbjct: 1837 PKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKY 1888
Score = 30.4 bits (67), Expect = 1.3
Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 3/99 (3%)
Query: 58 APWPPAYPPVT-SYPPLSQPDLLPIPSPQPLGGSHRTPSSRRDSDGANSVASYENEEPAC 116
+P P+Y P + SY P S PS P S+ S + + + P
Sbjct: 1672 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1731
Query: 117 EDADEDEDDYH--NPGYLVVLPDSTPATSTAAPSAPALS 153
Y +P Y P+ TP + + +P++P+ S
Sbjct: 1732 PSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYS 1770
Score = 28.1 bits (61), Expect = 6.7
Identities = 33/151 (21%), Positives = 48/151 (31%), Gaps = 4/151 (2%)
Query: 76 PDLLPIPSPQPLGGSHRTPSSRR-DSDGANSVASYENEEPACEDADEDEDDYHNPGYLVV 134
P P SP P PSS S G SY PA E +P Y
Sbjct: 1559 PGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPT 1618
Query: 135 LPDSTPATSTAAPSAPALSTPGIRDSAFSMESIDDYVNVPESGESAEASLDGSREYVNVS 194
P +P + + +P++P S ++S S P ++ + S Y S
Sbjct: 1619 SPSYSPTSPSYSPTSPNYSP---TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1675
Query: 195 QELHPGAAKTEPAALSSQEAEEVEEEGAPDY 225
P + P + S +P Y
Sbjct: 1676 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1706
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 35.8 bits (81), Expect = 0.032
Identities = 36/137 (26%), Positives = 56/137 (40%), Gaps = 12/137 (8%)
Query: 99 DSDGANSVASYENEEPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAPSAPALSTPGIR 158
+SDG + + E + A + E E + H V D+ A A P + + P
Sbjct: 2051 ESDGVEAPEAEEEAQEAEGEVQEAEGEAHPESEDV---DAQEAEGEAQPESEGVEAPEAE 2107
Query: 159 DSAFSMESID----DYVNVPESG--ESAEASLDGSREYVNVSQELHPGAAKTEPAALSSQ 212
A E I+ + PES E+ EA + E V + G A+ E + +Q
Sbjct: 2108 GEAQKAEGIEAPETEGEAQPESEGIEAPEAEGEAQPESEGVEAQDAEGEAQPESEGIEAQ 2167
Query: 213 EAEEVEEEGAPDYENLQ 229
EA EEE P+ E ++
Sbjct: 2168 EA---EEEAQPELEGVE 2181
Score = 33.9 bits (76), Expect = 0.12
Identities = 42/150 (28%), Positives = 59/150 (39%), Gaps = 18/150 (12%)
Query: 85 QPLGGSHRTPSSRRDSDGANSVASYENEEPACEDAD-----EDEDDYHNPGYLVVLPDST 139
QP P + D+ A A E+E+ +A+ E ED V P+S
Sbjct: 1845 QPESEGVEAPEAEGDAQEAEGEAQPESEDVEAPEAEGEAQPESEDVETPEAEWEVQPESE 1904
Query: 140 PATSTAAPSAPALSTPGIRDSAFSMESIDDYVNVPESGESAEASLDGSREYVNVSQELHP 199
A + A T + A E D+ PES E AEA +E +QE
Sbjct: 1905 GAEAPEAEKEAQPETESVE--ALETEGEDE----PES-EGAEA-----QEAEEAAQEAE- 1951
Query: 200 GAAKTEPAALSSQEAEEVEEEGAPDYENLQ 229
G + E + SQEAEE + + D E L+
Sbjct: 1952 GQTQPESEVIESQEAEEEAQPESEDVEALE 1981
>gi|31652264 RNA binding motif protein 26 [Homo sapiens]
Length = 980
Score = 35.8 bits (81), Expect = 0.032
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 11/89 (12%)
Query: 59 PWPPAYPPVTSYPPLSQPDLLPIPSPQPLGGSHRTPSSRRDSDGANSVASYENEEPACED 118
P PP+ PPVT PP P+P QP G P+S S ++ P
Sbjct: 369 PLPPSLPPVTGPPP-------PLPPLQP-SGMDAPPNSATSSVPTVVTTGIHHQPPPAPP 420
Query: 119 ADEDEDDYHNPGYLVVLPDSTPATSTAAP 147
+ D Y GY P++ T+T+ P
Sbjct: 421 SLFTADTYDTDGY---NPEAPSITNTSRP 446
>gi|40353729 Ras and Rab interactor 3 [Homo sapiens]
Length = 985
Score = 35.4 bits (80), Expect = 0.042
Identities = 45/177 (25%), Positives = 64/177 (36%), Gaps = 15/177 (8%)
Query: 32 LPGSYDSTSSDSLY-PRGIQFKRPHT-VAPWPPAYPPVTSYPPLSQPDLLPIPSPQPLGG 89
LP + D+TS S + PR P + P PA PPV P L+ P+P+ P+
Sbjct: 262 LPPTSDATSPTSRWAPRRPPPPPPVLPLQPCSPAQPPVL--PALAPAPACPLPTSPPVPA 319
Query: 90 SHRTPSSRRDSDGANSVASYENEEPACEDADED--EDDYHNPGYLVVLPDSTPA------ 141
H TP + D N E C A ++ PG PA
Sbjct: 320 PHVTPHAPGPPDHPNQPPMMTCERLPCPTAGLGPLREEAMKPGAASSPLQQVPAPPLPAK 379
Query: 142 --TSTAAPSAPALSTPGIRDSAFSMESIDDYVNVPESGESAEASLDGSREYVNVSQE 196
TA P + D + M + D +++P G S + D RE Q+
Sbjct: 380 KNLPTAPPRRRVSERVSLEDQSPGMAAEGDQLSLPPQGTS-DGPEDTPRESTEQGQD 435
>gi|155030232 proline, glutamic acid and leucine rich protein 1
[Homo sapiens]
Length = 1130
Score = 35.0 bits (79), Expect = 0.055
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 54 PHTVAPWPPAYPPVTSYPPLSQPDLLPIPSPQPLGGSHRTPSSRRDSDGANSVASYENEE 113
P + P PP PPV L P L+P +P G P+ D N +S E EE
Sbjct: 836 PGPLPPPPPPPPPVPGPVTLPPPQLVPEGTP----GGGGPPALEEDLTVININSSDEEEE 891
Query: 114 PACEDADEDEDD 125
E+ +E+E++
Sbjct: 892 EEEEEEEEEEEE 903
Score = 30.0 bits (66), Expect = 1.8
Identities = 27/91 (29%), Positives = 34/91 (37%), Gaps = 21/91 (23%)
Query: 54 PHTVAPWPPAYPPVTSYPPLSQPDLLPIPSPQPLG--GSHRTPSSRRDSDGANSVASYEN 111
P P PP PP PP+ P LP P P G G P+ D N +S E
Sbjct: 833 PAAPGPLPPPPPPP---PPVPGPVTLPPPQLVPEGTPGGGGPPALEEDLTVININSSDEE 889
Query: 112 EEPA----------------CEDADEDEDDY 126
EE E+ +EDE++Y
Sbjct: 890 EEEEEEEEEEEEEEEEEEEDFEEEEEDEEEY 920
Score = 30.0 bits (66), Expect = 1.8
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 58 APWPPAYPPVTSYPPLSQPDLLPIPSPQP 86
AP PP PP PP S P + P P P+P
Sbjct: 976 APPPPTLPPALP-PPESPPKVQPEPEPEP 1003
>gi|41281612 zinc finger protein 828 [Homo sapiens]
Length = 812
Score = 35.0 bits (79), Expect = 0.055
Identities = 51/193 (26%), Positives = 72/193 (37%), Gaps = 24/193 (12%)
Query: 33 PGSYDSTSSDSLYPRGIQFKRPHTVAPWPPAYPPVTSYPPLSQPDLLPIPSPQPLGGSHR 92
PGS+ S PR + + PW PA P P +S PIPS P G
Sbjct: 309 PGSWKPGPPGS--PRPWKSNPSASSGPWKPAKPA----PSVSPGPWKPIPSVSP-GPWKP 361
Query: 93 TPSSRRDSDGANSVASYENEEPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAPS-APA 151
TPS S ++SV+ + P A + P P +P A P +P
Sbjct: 362 TPSVSSASWKSSSVSPSSWKSPP---ASPESWKSGPPELRKTAPTLSPEHWKAVPPVSPE 418
Query: 152 LSTPGIRDSAFSMESIDDYVNVPESGESAEASLDGSREYVNVSQELHPGAAKTEPAALSS 211
L PG + + P +G GS + +S P KT PA+L
Sbjct: 419 LRKPG--------PPLSPEIRSP-AGSPELRKPSGSPDLWKLS----PDQRKTSPASLDF 465
Query: 212 QEAEEVEEEGAPD 224
E+++ G+PD
Sbjct: 466 PESQKSSRGGSPD 478
>gi|4759166 secreted phosphoprotein 1 isoform b [Homo sapiens]
Length = 300
Score = 34.7 bits (78), Expect = 0.071
Identities = 50/205 (24%), Positives = 75/205 (36%), Gaps = 24/205 (11%)
Query: 37 DSTSSDSLYPRGIQFKRPHTVAPWPPAYPPVTSYPPLSQPDLLPIPSPQPLGGSHRTPSS 96
DS SS+ + + K P VA W + P Q L P P SH
Sbjct: 23 DSGSSEE---KQLYNKYPDAVATW------LNPDPSQKQNLLAPQTLPSKSNESHDHMDD 73
Query: 97 RRDSDGANSVASYENEEPACEDADEDEDDYH----------NPGYLVVLPDSTPATSTAA 146
D D + V S ++ + D +D DD H + + P PAT
Sbjct: 74 MDDEDDDDHVDSQDSIDSNDSDDVDDTDDSHQSDESHHSDESDELVTDFPTDLPATEVFT 133
Query: 147 PSAPALST-PGIRDS-AFSMESIDDYVNVPESGESAEASLDGSREYVNVSQELHPGAAKT 204
P P + T G DS + + S P+ + +A+ + ++ S+EL+ GA K
Sbjct: 134 PVVPTVDTYDGRGDSVVYGLRSKSKKFRRPDI-QYPDATDEDITSHME-SEELN-GAYKA 190
Query: 205 EPAALSSQEAEEVEEEGAPDYENLQ 229
P A + + G YE Q
Sbjct: 191 IPVAQDLNAPSDWDSRGKDSYETSQ 215
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 34.7 bits (78), Expect = 0.071
Identities = 49/190 (25%), Positives = 68/190 (35%), Gaps = 29/190 (15%)
Query: 54 PHTVAPWPPAYPPVTSY--------PPLSQPDLLPIPSPQPLGGSHRTPSSRRDSDGANS 105
P + P PP P+ + P P LP+ P PL + SD A
Sbjct: 1014 PILMEPLPPQCSPLLQHSLVPQNSPPSQCSPPALPLSVPSPLSPIGKVVGV---SDEA-- 1068
Query: 106 VASYENEEPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAPS-APALST-PGIRDSAFS 163
E E E E E P LP S APS APAL G+ +
Sbjct: 1069 ----ELHEMETEKVSEPECPALEPSATSPLPSPMGDLSCPAPSPAPALDDFSGLGEDTAP 1124
Query: 164 MESIDDYVNVPESGE---SAEASLDGSREYVNVSQ-------ELHPGAAKTEPAALSSQE 213
++ ID + PE G+ S + L GS ++ + E++P +T +E
Sbjct: 1125 LDGIDAPGSQPEPGQTPGSLASELKGSPVLLDPEELAPVTPMEVYPECKQTAGQGSPCEE 1184
Query: 214 AEEVEEEGAP 223
EE AP
Sbjct: 1185 QEEPRAPVAP 1194
Score = 28.9 bits (63), Expect = 3.9
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 57 VAPWPPAYP----PVTSYPPLSQPDLLPIPSPQP 86
+AP PP++P P + P +QP L P P P P
Sbjct: 2358 LAPSPPSHPDIFRPGSYTDPYAQPPLTPRPQPPP 2391
Score = 28.1 bits (61), Expect = 6.7
Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 21/132 (15%)
Query: 33 PGSYDSTSSDSLYPRGIQFKRPHTVAPW-PPAYPPVTSYPPLSQPDL------LPIPSPQ 85
PG + +T P G +P T P+ P P + + P + P+ SP
Sbjct: 2223 PGEFHTT------PPGTPRHQPSTPDPFLKPRCPSLDNLAVPESPGVGGGKASEPLLSPP 2276
Query: 86 PLGGSHRTPSSRRDSDGANSVASYENEEPACEDADEDEDDYHNPGYLVVLPD-----STP 140
P G S + +++ GA+S SY P D H G + PD TP
Sbjct: 2277 PFGESRKALEVKKEELGASS-PSY--GPPNLGFVDSPSSGTHLGGLELKTPDVFKAPLTP 2333
Query: 141 ATSTAAPSAPAL 152
S P +P L
Sbjct: 2334 RASQVEPQSPGL 2345
>gi|154426272 hypothetical protein LOC54540 [Homo sapiens]
Length = 789
Score = 34.7 bits (78), Expect = 0.071
Identities = 43/199 (21%), Positives = 69/199 (34%), Gaps = 43/199 (21%)
Query: 54 PHTVAPWPPAYPPVTSYPPLSQPD--------------------LLPIPSPQPLGGSHRT 93
PHT P ++ P TS P L P LLP PS QPL +HR
Sbjct: 188 PHTPGPCQSSHLPSTSMPLLKMPPPFSGCSHPCSGHCGGHCSGPLLPPPSSQPLPSTHRD 247
Query: 94 PSSRRDSDGANSVASYENEEPACEDADEDEDDYHNPGYLVVLPDSTPATSTAAPSAPALS 153
P + + +A + ++ +E+D S++ S+ S
Sbjct: 248 PGCKGHKFAHSGLACQLPQPCEADEGLGEEED-----------------SSSERSSCTSS 290
Query: 154 TPGIRDSAFSMESIDDYVNVPESGESAEASLDGSREYVNVSQELHPG-AAKTEPAALSSQ 212
+ RD F D G +A + SR Y + ++L + E +
Sbjct: 291 STHQRDGKFC-----DCCYCEFFGHNAPPAAPTSRNYTEIREKLRSRLTRRKEELPMKGG 345
Query: 213 EAEEVEEEGAPDYENLQEL 231
+ E A D+ ++ EL
Sbjct: 346 TLGGIPGEPAVDHRDVDEL 364
>gi|222352122 hypothetical protein LOC284297 [Homo sapiens]
Length = 1573
Score = 34.3 bits (77), Expect = 0.093
Identities = 27/99 (27%), Positives = 38/99 (38%), Gaps = 9/99 (9%)
Query: 59 PWPPAYPP----VTSYPPLSQPDLLPIPSPQPLGGSHRTPSSRRDSDGANSVASYENEEP 114
PWP PP + PP P P SP P G + + SSR + + + ++ P
Sbjct: 988 PWPERRPPRPAATRTAPPTPSPG--PSASPGPPGPALTSDSSRELTPHSALTSEATSDAP 1045
Query: 115 ACEDADEDEDDYHNPGYLVVLPD---STPATSTAAPSAP 150
D NP ++ PD STP +S P
Sbjct: 1046 DTSPPTPDPASRTNPDLILTSPDFALSTPDSSVVPALTP 1084
>gi|38788219 zinc finger protein 428 [Homo sapiens]
Length = 188
Score = 34.3 bits (77), Expect = 0.093
Identities = 21/72 (29%), Positives = 25/72 (34%)
Query: 61 PPAYPPVTSYPPLSQPDLLPIPSPQPLGGSHRTPSSRRDSDGANSVASYENEEPACEDAD 120
PP PP P + P P P + LG P + A E EE
Sbjct: 105 PPGTPPCRLCCPATAPQEAPAPEGRALGEEEEEPPRAGEGRPAGREEEEEEEEEGTYHCT 164
Query: 121 EDEDDYHNPGYL 132
E ED + N G L
Sbjct: 165 ECEDSFDNLGEL 176
>gi|149363685 hypothetical protein LOC23379 [Homo sapiens]
Length = 2266
Score = 34.3 bits (77), Expect = 0.093
Identities = 31/103 (30%), Positives = 43/103 (41%), Gaps = 15/103 (14%)
Query: 23 MALCVHCHRLPGSYDSTSSDSLYPRGIQ-----FKRPHTVAPWPPAYPPVTSYPPLSQPD 77
+ + V HR GS + D + +Q FK P PP PV S PP+S P
Sbjct: 304 LEVLVQSHRDGGSTEFVDHDHFFDEDLQAAIDFFKLP------PPLLSPVPSPPPMSSPH 357
Query: 78 LLPIPS---PQPLGGSHRTPSSRRDSDGANSVASYENEEPACE 117
+PS P+ G + T SS DS + A +E+ E
Sbjct: 358 PGSLPSSFAPETYFGEY-TDSSDNDSVQLRNSAECVSEDDTTE 399
>gi|11386183 WAS protein family, member 2 [Homo sapiens]
Length = 498
Score = 34.3 bits (77), Expect = 0.093
Identities = 32/102 (31%), Positives = 37/102 (36%), Gaps = 18/102 (17%)
Query: 33 PGSYDSTSSDSLYPRGIQFKRPHTVAPWPPAYPPVTSY-----PPLSQP--DLLPIPSPQ 85
PG+ S S P P AP PP PP Y PPLSQP P P P
Sbjct: 344 PGTPPPPSPPSFPPH------PDFAAPPPPPPPPAADYPTLPPPPLSQPTGGAPPPPPPP 397
Query: 86 PLGGSHRTPSSRRDSDGA-----NSVASYENEEPACEDADED 122
P G P + D A + ++ PA DA D
Sbjct: 398 PPPGPPPPPFTGADGQPAIPPPLSDTTKPKSSLPAVSDARSD 439
Score = 28.5 bits (62), Expect = 5.1
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 52 KRPHTVAP-WPPAYPPVTSYPPLSQPDLLPIPSPQP 86
KR V+P PP PP+ S PP +P P P+P P
Sbjct: 290 KRSSVVSPSHPPPAPPLGS-PPGPKPGFAPPPAPPP 324
>gi|217035107 pre-mRNA cleavage factor I, 59 kDa subunit isoform 3
[Homo sapiens]
Length = 462
Score = 34.3 bits (77), Expect = 0.093
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 38 STSSDSLYPRGIQFKRPHTVAPW---PPAYPPVTSYPPLSQPDLLPIPSPQPLGGSHRTP 94
+T S++L P + +P +V P+ PP+ P+ PP PIP P PL S P
Sbjct: 193 ATPSENLVPSSARVDKPPSVLPYFNRPPSALPLMGLPPP------PIPPPPPLSSSFGVP 246
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.129 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,327,588
Number of Sequences: 37866
Number of extensions: 658718
Number of successful extensions: 5256
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 333
Number of HSP's that attempted gapping in prelim test: 4430
Number of HSP's gapped (non-prelim): 1029
length of query: 232
length of database: 18,247,518
effective HSP length: 99
effective length of query: 133
effective length of database: 14,498,784
effective search space: 1928338272
effective search space used: 1928338272
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.