Guide to the Human Genome
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Name: KIAA0947 Sequence: fasta or formatted (2266aa) NCBI GI: 149363685
Description:

hypothetical protein LOC23379

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0        136           3
 C cysteine            2.3         53           2
 D aspartate           5.1        116           3
 E glutamate           8.7        198           3
 F phenylalanine       2.6         60           2
 G glycine             5.8        131           2
 H histidine           2.3         52           2
 I isoleucine          4.3         97           3
 K lysine              6.7        152           3
 L leucine             8.8        200           4
 M methionine          1.4         31           2
 N asparagine          4.4         99           3
 P proline             6.3        143           3
 Q glutamine           5.0        113           2
 R arginine            4.0         90           2
 S serine             12.0        271           4
 T threonine           7.2        164           2
 V valine              5.0        113           2
 W tryptophan          0.9         20           1
 Y tyrosine            1.2         27           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC23379 
MUC17                 0.009   mucin 17 
KIAA0754              0.009   hypothetical protein LOC643314 
SIK2                  0.008   SNF1-like kinase 2 
WASF2                 0.008   WAS protein family, member 2 
LOC100294238          0.008   PREDICTED: hypothetical protein 
LOC100294204          0.008   PREDICTED: hypothetical protein 
LOC729792             0.008   PREDICTED: hypothetical protein 
LOC729792             0.007   PREDICTED: hypothetical protein 
LOC729792             0.007   PREDICTED: hypothetical protein 
LOC100294249          0.007   PREDICTED: hypothetical protein XP_002344067 
LOC100294136          0.007   PREDICTED: hypothetical protein 
LOC100294091          0.007   PREDICTED: hypothetical protein 
LOC730401             0.007   PREDICTED: hypothetical protein 
LOC100294501          0.007   PREDICTED: hypothetical protein 
GCC2                  0.007   GRIP and coiled-coil domain-containing 2 
WIPF3                 0.007   WAS/WASL interacting protein family, member 3 [Homo...
MUC16                 0.007   mucin 16 
WNK2                  0.006   WNK lysine deficient protein kinase 2 
CEP120                0.006   coiled-coil domain containing 100 
PRR12                 0.006   proline rich 12 
PRG4                  0.006   proteoglycan 4 isoform D 
PRG4                  0.006   proteoglycan 4 isoform C 
PRG4                  0.006   proteoglycan 4 isoform B 
PRG4                  0.006   proteoglycan 4 isoform A 
EEA1                  0.006   early endosome antigen 1, 162kD 
MYH9                  0.006   myosin, heavy polypeptide 9, non-muscle 
CCDC88A               0.006   coiled-coil domain containing 88A isoform 2 
MUC7                  0.006   mucin 7, secreted precursor 
MUC7                  0.006   mucin 7, secreted precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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