Guide to the Human Genome
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Name: CPSF7 Sequence: fasta or formatted (462aa) NCBI GI: 217035107
Description:

pre-mRNA cleavage factor I, 59 kDa subunit isoform 3

Referenced in:

Polyadenylation

Other entries for this name:
alt prot [471aa] pre-mRNA cleavage factor I, 59 kDa subunit isoform 2
alt prot [514aa] pre-mRNA cleavage factor I, 59 kDa subunit isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         36           2
 C cysteine            0.4          2           1
 D aspartate           6.5         30           2
 E glutamate           5.8         27           2
 F phenylalanine       2.4         11           2
 G glycine             4.5         21           1
 H histidine           3.7         17           2
 I isoleucine          4.1         19           1
 K lysine              3.5         16           1
 L leucine             6.7         31           2
 M methionine          1.1          5           1
 N asparagine          4.3         20           2
 P proline            12.8         59           5
 Q glutamine           3.0         14           2
 R arginine            8.9         41           2
 S serine             11.7         54           3
 T threonine           3.2         15           2
 V valine              6.1         28           3
 W tryptophan          0.4          2           2
 Y tyrosine            3.0         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   pre-mRNA cleavage factor I, 59 kDa subunit isoform ... 
CPSF7                 0.992   pre-mRNA cleavage factor I, 59 kDa subunit isoform ...
CPSF7                 0.992   pre-mRNA cleavage factor I, 59 kDa subunit isoform ...
CPSF6                 0.405   cleavage and polyadenylation specific factor 6, 68 ...
CCNK                  0.057   cyclin K isoform 1 
WASF2                 0.052   WAS protein family, member 2 
FMN2                  0.051   formin 2 
DIAPH1                0.048   diaphanous 1 isoform 2 
DIAPH1                0.048   diaphanous 1 isoform 1 
WASL                  0.047   Wiskott-Aldrich syndrome gene-like protein 
SF3B4                 0.046   splicing factor 3b, subunit 4 
ENAH                  0.044   enabled homolog isoform a 
ENAH                  0.044   enabled homolog isoform b 
DIAPH2                0.044   diaphanous 2 isoform 12C 
DIAPH2                0.044   diaphanous 2 isoform 156 
SETD1B                0.044   SET domain containing 1B 
FMN1                  0.042   formin 1 
FIP1L1                0.042   FIP1 like 1 isoform 2 
TCERG1                0.042   transcription elongation regulator 1 isoform 2 [Homo...
TCERG1                0.042   transcription elongation regulator 1 isoform 1 [Homo...
FIP1L1                0.041   FIP1 like 1 isoform 3 
WBP11                 0.041   WW domain binding protein 11 
RBM12                 0.039   RNA binding motif protein 12 
RBM12                 0.039   RNA binding motif protein 12 
WAS                   0.038   Wiskott-Aldrich syndrome protein 
DAZAP1                0.038   DAZ associated protein 1 isoform a 
DAZAP1                0.038   DAZ associated protein 1 isoform b 
PRR12                 0.038   proline rich 12 
GLTSCR1               0.038   glioma tumor suppressor candidate region gene 1 [Ho...
WIPF2                 0.038   WIRE protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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