Guide to the Human Genome
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Name: KRTAP1-4 Sequence: fasta or formatted (126aa) NCBI GI: 239751304
Description:

PREDICTED: keratin associated protein 1-4

Referenced in:

Keratins

Other entries for this name:
alt mRNA [126aa] PREDICTED: keratin associated protein 1-4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.2          4           1
 C cysteine           24.6         31           3
 D aspartate           0.8          1           1
 E glutamate           4.0          5           1
 F phenylalanine       0.0          0           0
 G glycine            12.7         16           3
 H histidine           4.0          5           2
 I isoleucine          2.4          3           1
 K lysine              0.8          1           1
 L leucine             2.4          3           1
 M methionine          0.8          1           1
 N asparagine          0.0          0           0
 P proline             8.7         11           2
 Q glutamine           4.8          6           1
 R arginine            3.2          4           1
 S serine             14.3         18           2
 T threonine           7.1          9           1
 V valine              2.4          3           1
 W tryptophan          0.8          1           1
 X unknown             0.8          1           1
 Y tyrosine            2.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: keratin associated protein 1-4 
KRTAP1-4              1.000   PREDICTED: keratin associated protein 1-4 
KRTAP1-3              0.847   keratin associated protein 1-3 
KRTAP1-1              0.829   keratin associated protein 1-1 
KRTAP1-5              0.740   keratin associated protein 1.5 
KRTAP4-3              0.327   keratin associated protein 4-3 
KRTAP4-8              0.320   PREDICTED: keratin associated protein 4-8 isoform 3...
KRTAP4-8              0.320   PREDICTED: keratin associated protein 4-8 isoform 1...
LOC100134267          0.320   PREDICTED: similar to keratin associated protein 4-...
LOC100134267          0.320   PREDICTED: similar to keratin associated protein 4-...
KRTAP4-12             0.320   keratin associated protein 4-12 
KRTAP4-9              0.320   keratin associated protein 4-9 
KRTAP4-9              0.317   PREDICTED: keratin associated protein 4-9 isoform 2...
KRTAP4-4              0.317   keratin associated protein 4.4 
KRTAP4-9              0.317   PREDICTED: keratin associated protein 4-9 isoform 1...
KRTAP4-5              0.313   keratin associated protein 4-5 
KRTAP4-11             0.310   keratin associated protein 4-11 
KRTAP4-8              0.310   PREDICTED: keratin associated protein 4-8 isoform 2...
LOC100134267          0.310   PREDICTED: similar to keratin associated protein 4-...
KRTAP4-8              0.310   PREDICTED: keratin associated protein 4-8 
KRTAP4-8              0.306   PREDICTED: keratin associated protein 4.8 
KRTAP4-8              0.306   keratin associated protein 4.8 
KRTAP4-7              0.295   keratin associated protein 4-7 
KRTAP4-7              0.295   PREDICTED: keratin associated protein 4-7 
LOC728318             0.288   PREDICTED: hypothetical protein 
LOC728318             0.288   PREDICTED: hypothetical protein 
LOC728318             0.288   PREDICTED: hypothetical protein 
KRTAP4-2              0.285   keratin associated protein 4-2 
KRTAP9-2              0.274   keratin associated protein 9.2 
KRTAP9-8              0.267   keratin associated protein 9.8 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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