Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: DEFB114 Sequence: fasta or formatted (69aa) NCBI GI: 82734219
Description:

beta-defensin 114

Referenced in:

Additional Host Defense Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.9          2           1
 C cysteine           11.6          8           2
 D aspartate           7.2          5           2
 E glutamate           7.2          5           2
 F phenylalanine       5.8          4           1
 G glycine             1.4          1           1
 H histidine           1.4          1           1
 I isoleucine          7.2          5           1
 K lysine              7.2          5           1
 L leucine            10.1          7           1
 M methionine          2.9          2           1
 N asparagine          1.4          1           1
 P proline             2.9          2           1
 Q glutamine           1.4          1           1
 R arginine            8.7          6           1
 S serine              2.9          2           1
 T threonine           7.2          5           1
 V valine              2.9          2           1
 W tryptophan          0.0          0           0
 Y tyrosine            7.2          5           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   beta-defensin 114 
DEFB131               0.102   defensin, beta 131 
LOC100128174          0.078   PREDICTED: hypothetical protein 
LOC100128174          0.078   PREDICTED: similar to defensin, beta 131 
LOC100128174          0.078   PREDICTED: similar to defensin, beta 131 
DEFB105A              0.078   defensin, beta 105A precursor 
DEFB105B              0.078   defensin, beta 105B precursor 
LOC100129216          0.078   PREDICTED: similar to defensin, beta 131 
LOC100129216          0.078   PREDICTED: similar to defensin, beta 131 
LOC100129216          0.078   PREDICTED: similar to defensin, beta 131 
LOC100287066          0.078   PREDICTED: hypothetical protein XP_002342880 
DEFB106A              0.078   defensin, beta 106A precursor 
DEFB106B              0.078   defensin, beta 106B precursor 
DEFB112               0.070   beta-defensin 112 
DEFB103A              0.070   defensin, beta 103A precursor 
DEFB103B              0.070   beta-defensin 103B precursor 
DEFB123               0.055   defensin, beta 123 precursor 
DEFB111               0.055   beta-defensin 111 
DEFB115               0.039   beta-defensin 115 
DEFB121               0.039   defensin, beta 121 
DEFB110               0.039   beta-defensin 110 
DEFB133               0.039   PREDICTED: defensin, beta 133 
DEFB133               0.039   PREDICTED: defensin, beta 133 
DEFB133               0.039   PREDICTED: beta-defensin 133 
LTBP2                 0.031   latent transforming growth factor beta binding protei...
NR6A1                 0.031   nuclear receptor subfamily 6, group A, member 1 isof...
NR6A1                 0.031   nuclear receptor subfamily 6, group A, member 1 isof...
DEFB129               0.031   beta defensin 129 precursor 
SPAG11B               0.023   sperm associated antigen 11B isoform E precursor [H...
SPAG11B               0.023   sperm associated antigen 11B isoform D preproprotei...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press