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Search of human proteins with 57634536
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|57634536 La ribonucleoprotein domain family, member 4B [Homo
sapiens]
(738 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|57634536 La ribonucleoprotein domain family, member 4B [Homo ... 1484 0.0
gi|40353738 c-Mpl binding protein isoform a [Homo sapiens] 421 e-117
gi|40353740 c-Mpl binding protein isoform b [Homo sapiens] 420 e-117
gi|40353736 c-Mpl binding protein isoform c [Homo sapiens] 253 4e-67
gi|61102725 la related protein isoform 2 [Homo sapiens] 55 2e-07
gi|39725634 la related protein isoform 1 [Homo sapiens] 55 2e-07
gi|30061565 La ribonucleoprotein domain family member 2 isoform ... 53 1e-06
gi|30061569 La ribonucleoprotein domain family member 2 isoform ... 53 1e-06
gi|30061567 La ribonucleoprotein domain family member 2 isoform ... 53 1e-06
gi|120587027 ubiquitin specific peptidase 31 [Homo sapiens] 49 2e-05
gi|109809739 La ribonucleoprotein domain family, member 7 [Homo ... 48 3e-05
gi|109809741 La ribonucleoprotein domain family, member 7 [Homo ... 48 3e-05
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens] 47 5e-05
gi|163965366 nascent polypeptide-associated complex alpha subuni... 47 6e-05
gi|47933339 RNA binding motif protein 15 [Homo sapiens] 44 5e-04
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 44 5e-04
gi|189181724 proteoglycan 4 isoform D [Homo sapiens] 43 0.001
gi|189181722 proteoglycan 4 isoform C [Homo sapiens] 43 0.001
gi|189181720 proteoglycan 4 isoform B [Homo sapiens] 43 0.001
gi|67190163 proteoglycan 4 isoform A [Homo sapiens] 43 0.001
gi|193083183 synaptopodin 2 isoform a [Homo sapiens] 43 0.001
gi|153792780 additional sex combs like 2 [Homo sapiens] 43 0.001
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 43 0.001
gi|119943102 CREB binding protein isoform b [Homo sapiens] 43 0.001
gi|119943104 CREB binding protein isoform a [Homo sapiens] 43 0.001
gi|58530845 zyxin [Homo sapiens] 43 0.001
gi|4508047 zyxin [Homo sapiens] 43 0.001
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 42 0.002
gi|157074225 nuclear pore complex interacting protein-like 3 [Ho... 42 0.002
gi|149773456 hypothetical protein LOC643314 [Homo sapiens] 42 0.003
>gi|57634536 La ribonucleoprotein domain family, member 4B [Homo
sapiens]
Length = 738
Score = 1484 bits (3841), Expect = 0.0
Identities = 738/738 (100%), Positives = 738/738 (100%)
Query: 1 MTSDQDAKVVAEPQTQRVQEGKDSAHLMNGPISQTTSQTSSIPPLSQVPATKVSELNPNA 60
MTSDQDAKVVAEPQTQRVQEGKDSAHLMNGPISQTTSQTSSIPPLSQVPATKVSELNPNA
Sbjct: 1 MTSDQDAKVVAEPQTQRVQEGKDSAHLMNGPISQTTSQTSSIPPLSQVPATKVSELNPNA 60
Query: 61 EVWGAPVLHLEASSAADGVSAAWEEVAGHHADRGPQGSDANGDGDQGHENAALPDPQESD 120
EVWGAPVLHLEASSAADGVSAAWEEVAGHHADRGPQGSDANGDGDQGHENAALPDPQESD
Sbjct: 61 EVWGAPVLHLEASSAADGVSAAWEEVAGHHADRGPQGSDANGDGDQGHENAALPDPQESD 120
Query: 121 PADMNALALGPSEYDSLPENSETGGNESQPDSQEDPREVLKKTLEFCLSRENLASDMYLI 180
PADMNALALGPSEYDSLPENSETGGNESQPDSQEDPREVLKKTLEFCLSRENLASDMYLI
Sbjct: 121 PADMNALALGPSEYDSLPENSETGGNESQPDSQEDPREVLKKTLEFCLSRENLASDMYLI 180
Query: 181 SQMDSDQYVPITTVANLDHIKKLSTDVDLIVEVLRSLPLVQVDEKGEKVRPNQNRCIVIL 240
SQMDSDQYVPITTVANLDHIKKLSTDVDLIVEVLRSLPLVQVDEKGEKVRPNQNRCIVIL
Sbjct: 181 SQMDSDQYVPITTVANLDHIKKLSTDVDLIVEVLRSLPLVQVDEKGEKVRPNQNRCIVIL 240
Query: 241 REISESTPVEEVEALFKGDNLPKFINCEFAYNDNWFITFETEADAQQAYKYLREEVKTFQ 300
REISESTPVEEVEALFKGDNLPKFINCEFAYNDNWFITFETEADAQQAYKYLREEVKTFQ
Sbjct: 241 REISESTPVEEVEALFKGDNLPKFINCEFAYNDNWFITFETEADAQQAYKYLREEVKTFQ 300
Query: 301 GKPIKARIKAKAIAINTFLPKNGFRPLDVSLYAQQRYATSFYFPPMYSPQQQFPLYSLIT 360
GKPIKARIKAKAIAINTFLPKNGFRPLDVSLYAQQRYATSFYFPPMYSPQQQFPLYSLIT
Sbjct: 301 GKPIKARIKAKAIAINTFLPKNGFRPLDVSLYAQQRYATSFYFPPMYSPQQQFPLYSLIT 360
Query: 361 PQTWSATHSYLDPPLVTPFPNTGFINGFTSPAFKPAASPLTSLRQYPPRSRNPSKSHLRH 420
PQTWSATHSYLDPPLVTPFPNTGFINGFTSPAFKPAASPLTSLRQYPPRSRNPSKSHLRH
Sbjct: 361 PQTWSATHSYLDPPLVTPFPNTGFINGFTSPAFKPAASPLTSLRQYPPRSRNPSKSHLRH 420
Query: 421 AIPSAERGPGLLESPSIFNFTADRLINGVRSPQTRQAGQTRTRIQNPSAYAKREAGPGRV 480
AIPSAERGPGLLESPSIFNFTADRLINGVRSPQTRQAGQTRTRIQNPSAYAKREAGPGRV
Sbjct: 421 AIPSAERGPGLLESPSIFNFTADRLINGVRSPQTRQAGQTRTRIQNPSAYAKREAGPGRV 480
Query: 481 EPGSLESSPGLGRGRKNSFGYRKKREEKFTSSQTQSPTPPKPPSPSFELGLSSFPPLPGA 540
EPGSLESSPGLGRGRKNSFGYRKKREEKFTSSQTQSPTPPKPPSPSFELGLSSFPPLPGA
Sbjct: 481 EPGSLESSPGLGRGRKNSFGYRKKREEKFTSSQTQSPTPPKPPSPSFELGLSSFPPLPGA 540
Query: 541 AGNLKTEDLFENRLSSLIIGPSKERTLSADASVNTLPVVVSREPSVPASCAVSATYERSP 600
AGNLKTEDLFENRLSSLIIGPSKERTLSADASVNTLPVVVSREPSVPASCAVSATYERSP
Sbjct: 541 AGNLKTEDLFENRLSSLIIGPSKERTLSADASVNTLPVVVSREPSVPASCAVSATYERSP 600
Query: 601 SPAHLPDDPKVAEKQRETHSVDRLPSALTATACKSVQVNGAATELRKPSYAEICQRTSKE 660
SPAHLPDDPKVAEKQRETHSVDRLPSALTATACKSVQVNGAATELRKPSYAEICQRTSKE
Sbjct: 601 SPAHLPDDPKVAEKQRETHSVDRLPSALTATACKSVQVNGAATELRKPSYAEICQRTSKE 660
Query: 661 PPSSPLQPQKEQKPNTVGCGKEEKKLAEPAERYREPPALKSTPGAPRDQRRPAGGRPSPS 720
PPSSPLQPQKEQKPNTVGCGKEEKKLAEPAERYREPPALKSTPGAPRDQRRPAGGRPSPS
Sbjct: 661 PPSSPLQPQKEQKPNTVGCGKEEKKLAEPAERYREPPALKSTPGAPRDQRRPAGGRPSPS 720
Query: 721 AMGKRLSREQSTPPKSPQ 738
AMGKRLSREQSTPPKSPQ
Sbjct: 721 AMGKRLSREQSTPPKSPQ 738
>gi|40353738 c-Mpl binding protein isoform a [Homo sapiens]
Length = 724
Score = 421 bits (1081), Expect = e-117
Identities = 282/744 (37%), Positives = 404/744 (54%), Gaps = 83/744 (11%)
Query: 50 ATKVSELNPNAEVWG--APVLHLEASSAADGVSAAWEEVAGHHADRGPQGSDANGDGDQG 107
A+K + LNPNA+VW AP + +A+ G ++W E+A ++ + D +
Sbjct: 9 ASKGTGLNPNAKVWQEIAPG-NTDATPVTHGTESSWHEIAATSGAHPEGNAELSEDICKE 67
Query: 108 HE---NAALPDPQESDPAD--MNALALGPSEYDSLPENSETGGNESQPDSQEDPREVLKK 162
+E +++ + + + + + LGP + + + G + S ED +E LKK
Sbjct: 68 YEVMYSSSCETTRNTTGIEESTDGMILGPEDLSY--QIYDVSGESNSAVSTEDLKECLKK 125
Query: 163 TLEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDVDLIVEVLRSLPLVQV 222
LEFC SRENL+ D+YLISQMDSDQ++PI TVAN++ IKKL+TD DLI+EVLRS P+VQV
Sbjct: 126 QLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQV 185
Query: 223 DEKGEKVRPNQNRCIVILREISESTPVEEVEALFKGDNLPKFINCEFAYNDNWFITFETE 282
DEKGEKVRP+ RCIVILREI E+TP+EEV+ LFK +N PK I+CEFA+N NW+ITF+++
Sbjct: 186 DEKGEKVRPSHKRCIVILREIPETTPIEEVKGLFKSENCPKVISCEFAHNSNWYITFQSD 245
Query: 283 ADAQQAYKYLREEVKTFQGKPIKARIKAKAIAINTFLPKNGFRPLDVSLYA-----QQRY 337
DAQQA+KYLREEVKTFQGKPI RIK AINTF KNG+R +D S+Y+ Q +Y
Sbjct: 246 TDAQQAFKYLREEVKTFQGKPIMVRIK----AINTFFAKNGYRLMDSSIYSHPIQTQAQY 301
Query: 338 ATSFYFPPMYSPQQQFPLYSLITPQTWSATHS-YLDPPLVTPFPNTGFINGFTSP-AFKP 395
A+ + P+Y+P QQ+ +YS++ PQ+WS + Y + PL PFPN F+NGF SP ++K
Sbjct: 302 ASPVFMQPVYNPHQQYSVYSIV-PQSWSPNPTPYFETPL-APFPNGSFVNGFNSPGSYKT 359
Query: 396 AASPLTSLRQYPPRSRNP---SKSHLRHAIP-SAERGPGLLESPSIFNFTADRLINGVRS 451
A+ + R + P S H+ S G G L S NF A+R +
Sbjct: 360 NAAAMNMGRPFQKNRVKPQFRSSGGSEHSTEGSVSLGDGQLNRYSSRNFPAER-----HN 414
Query: 452 PQTRQAGQTRTRIQNPSAYAKREAGPGRVEPGSLESSPGLGRGRKNSFGYRKKREEKFTS 511
P T Q +T +Q ++ + +E + GRGR+ F R++RE+ S
Sbjct: 415 P-TVTGHQEQTYLQKETSTLQ------------VEQNGDYGRGRRTLFRGRRRREDDRIS 461
Query: 512 SQTQSPTPPKPPSPSFELGLSSFPPLPGAAGNLKTEDLFENRLSSLIIGPSKER-----T 566
S K P+P F+L S+FPPLPG++ + E + ENR+S ++ G KE+ T
Sbjct: 462 RPHPSTAESKAPTPKFDLLASNFPPLPGSSSRMPGELVLENRMSDVVKGVYKEKDNEELT 521
Query: 567 LSADASVNTLPVVVSREP---SVPASCAVSAT-YERSPSPAHLPDDPKVAEKQRETHSVD 622
+S + S + S + CA T + L +D V + ++
Sbjct: 522 ISCPVPADEQTECTSAQQLNMSTSSPCAAELTALSTTQQEKDLIEDSSVQKDGLNQTTIP 581
Query: 623 RLP-------SALTATACKSVQVNGAAT----ELRKPSYAEICQRTSKEPPSSPLQPQKE 671
P A TA+ C + +N A E RK SYAE+CQ+ KEP S +QP +E
Sbjct: 582 VSPPSTTKPSRASTASPCNN-NINAATAVALQEPRKLSYAEVCQKPPKEPSSVLVQPLRE 640
Query: 672 QKPNTVGCGKEEKKLA--EPAERYREPPALKST---------------PGAPRDQRRPAG 714
+ N V K E A E+ E P +++ G R+QRR
Sbjct: 641 LRSNVVSPTKNEDNGAPENSVEKPHEKPEARASKDYSGFRGNIIPRGAAGKIREQRRQFS 700
Query: 715 GRPSPSAMGKRLSREQSTPPKSPQ 738
R P + +R +EQ PP+SP+
Sbjct: 701 HRAIPQGVTRRNGKEQYVPPRSPK 724
>gi|40353740 c-Mpl binding protein isoform b [Homo sapiens]
Length = 730
Score = 420 bits (1080), Expect = e-117
Identities = 283/750 (37%), Positives = 399/750 (53%), Gaps = 89/750 (11%)
Query: 50 ATKVSELNPNAEVWG--APVLHLEASSAADGVSAAWEEVAGHHADRGPQGSDANGDGDQG 107
A+K + LNPNA+VW AP + +A+ G ++W E+A G+ +
Sbjct: 9 ASKGTGLNPNAKVWQEIAPG-NTDATPVTHGTESSWHEIAATSGAHPEVSVFNTGNAELS 67
Query: 108 HENAALPDPQESDPADM-----------NALALGPSEYDSLPENSETGGNESQPDSQEDP 156
+ + S + + + LGP + + + G + S ED
Sbjct: 68 EDICKEYEVMYSSSCETTRNTTGIEESTDGMILGPEDLSY--QIYDVSGESNSAVSTEDL 125
Query: 157 REVLKKTLEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDVDLIVEVLRS 216
+E LKK LEFC SRENL+ D+YLISQMDSDQ++PI TVAN++ IKKL+TD DLI+EVLRS
Sbjct: 126 KECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRS 185
Query: 217 LPLVQVDEKGEKVRPNQNRCIVILREISESTPVEEVEALFKGDNLPKFINCEFAYNDNWF 276
P+VQVDEKGEKVRP+ RCIVILREI E+TP+EEV+ LFK +N PK I+CEFA+N NW+
Sbjct: 186 SPMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKGLFKSENCPKVISCEFAHNSNWY 245
Query: 277 ITFETEADAQQAYKYLREEVKTFQGKPIKARIKAKAIAINTFLPKNGFRPLDVSLYA--- 333
ITF+++ DAQQA+KYLREEVKTFQGKPI ARIK AINTF KNG+R +D S+Y+
Sbjct: 246 ITFQSDTDAQQAFKYLREEVKTFQGKPIMARIK----AINTFFAKNGYRLMDSSIYSHPI 301
Query: 334 --QQRYATSFYFPPMYSPQQQFPLYSLITPQTWSATHS-YLDPPLVTPFPNTGFINGFTS 390
Q +YA+ + P+Y+P QQ+ +YS++ PQ+WS + Y + PL PFPN F+NGF S
Sbjct: 302 QTQAQYASPVFMQPVYNPHQQYSVYSIV-PQSWSPNPTPYFETPL-APFPNGSFVNGFNS 359
Query: 391 P-AFKPAASPLTSLRQYPPRSRNP---SKSHLRHAIP-SAERGPGLLESPSIFNFTADRL 445
P ++K A+ + R + P S H+ S G G L S NF A+R
Sbjct: 360 PGSYKTNAAAMNMGRPFQKNRVKPQFRSSGGSEHSTEGSVSLGDGQLNRYSSRNFPAER- 418
Query: 446 INGVRSPQTRQAGQTRTRIQNPSAYAKREAGPGRVEPGSLESSPGLGRGRKNSFGYRKKR 505
+P T Q +T +Q ++ + +E + GRGR+ F R++R
Sbjct: 419 ----HNP-TVTGHQEQTYLQKETSTLQ------------VEQNGDYGRGRRTLFRGRRRR 461
Query: 506 EEKFTSSQTQSPTPPKPPSPSFELGLSSFPPLPGAAGNLKTEDLFENRLSSLIIGPSKER 565
E+ S S K P+P F+L S+FPPLPG++ + E + ENR+S ++ G KE+
Sbjct: 462 EDDRISRPHPSTAESKAPTPKFDLLASNFPPLPGSSSRMPGELVLENRMSDVVKGVYKEK 521
Query: 566 -----TLSADASVNTLPVVVSREP---SVPASCAVSAT-YERSPSPAHLPDDPKVAEKQR 616
T+S + S + S + CA T + L +D V +
Sbjct: 522 DNEELTISCPVPADEQTECTSAQQLNMSTSSPCAAELTALSTTQQEKDLIEDSSVQKDGL 581
Query: 617 ETHSVDRLP-------SALTATACKSVQVNGAAT----ELRKPSYAEICQRTSKEPPSSP 665
++ P A TA+ C + +N A E RK SYAE+CQ+ KEP S
Sbjct: 582 NQTTIPVSPPSTTKPSRASTASPCNN-NINAATAVALQEPRKLSYAEVCQKPPKEPSSVL 640
Query: 666 LQPQKEQKPNTVGCGKEEKKLA--EPAERYREPPALKST---------------PGAPRD 708
+QP +E + N V K E A E+ E P +++ G R+
Sbjct: 641 VQPLRELRSNVVSPTKNEDNGAPENSVEKPHEKPEARASKDYSGFRGNIIPRGAAGKIRE 700
Query: 709 QRRPAGGRPSPSAMGKRLSREQSTPPKSPQ 738
QRR R P + +R +EQ PP+SP+
Sbjct: 701 QRRQFSHRAIPQGVTRRNGKEQYVPPRSPK 730
>gi|40353736 c-Mpl binding protein isoform c [Homo sapiens]
Length = 653
Score = 253 bits (646), Expect = 4e-67
Identities = 135/264 (51%), Positives = 183/264 (69%), Gaps = 10/264 (3%)
Query: 50 ATKVSELNPNAEVWG--APVLHLEASSAADGVSAAWEEVAGHHADRGPQGSDANGDGDQG 107
A+K + LNPNA+VW AP + +A+ G ++W E+A ++ + D +
Sbjct: 9 ASKGTGLNPNAKVWQEIAPG-NTDATPVTHGTESSWHEIAATSGAHPEGNAELSEDICKE 67
Query: 108 HE---NAALPDPQESDPAD--MNALALGPSEYDSLPENSETGGNESQPDSQEDPREVLKK 162
+E +++ + + + + + LGP + + + G + S ED +E LKK
Sbjct: 68 YEVMYSSSCETTRNTTGIEESTDGMILGPEDLSY--QIYDVSGESNSAVSTEDLKECLKK 125
Query: 163 TLEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDVDLIVEVLRSLPLVQV 222
LEFC SRENL+ D+YLISQMDSDQ++PI TVAN++ IKKL+TD DLI+EVLRS P+VQV
Sbjct: 126 QLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQV 185
Query: 223 DEKGEKVRPNQNRCIVILREISESTPVEEVEALFKGDNLPKFINCEFAYNDNWFITFETE 282
DEKGEKVRP+ RCIVILREI E+TP+EEV+ LFK +N PK I+CEFA+N NW+ITF+++
Sbjct: 186 DEKGEKVRPSHKRCIVILREIPETTPIEEVKGLFKSENCPKVISCEFAHNSNWYITFQSD 245
Query: 283 ADAQQAYKYLREEVKTFQGKPIKA 306
DAQQA+KYLREEVKTFQGKPI A
Sbjct: 246 TDAQQAFKYLREEVKTFQGKPIMA 269
Score = 128 bits (322), Expect = 2e-29
Identities = 117/409 (28%), Positives = 174/409 (42%), Gaps = 65/409 (15%)
Query: 374 PLVTPFPNTGFINGFTSP-AFKPAASPLTSLRQYPPRSRNP---SKSHLRHAIP-SAERG 428
P++ PFPN F+NGF SP ++K A+ + R + P S H+ S G
Sbjct: 266 PIMAPFPNGSFVNGFNSPGSYKTNAAAMNMGRPFQKNRVKPQFRSSGGSEHSTEGSVSLG 325
Query: 429 PGLLESPSIFNFTADRLINGVRSPQTRQAGQTRTRIQNPSAYAKREAGPGRVEPGSL--E 486
G L S NF A+R NP+ +E + E +L E
Sbjct: 326 DGQLNRYSSRNFPAER--------------------HNPTVTGHQEQTYLQKETSTLQVE 365
Query: 487 SSPGLGRGRKNSFGYRKKREEKFTSSQTQSPTPPKPPSPSFELGLSSFPPLPGAAGNLKT 546
+ GRGR+ F R++RE+ S S K P+P F+L S+FPPLPG++ +
Sbjct: 366 QNGDYGRGRRTLFRGRRRREDDRISRPHPSTAESKAPTPKFDLLASNFPPLPGSSSRMPG 425
Query: 547 EDLFENRLSSLIIGPSKER-----TLSADASVNTLPVVVSREP---SVPASCAVSAT-YE 597
E + ENR+S ++ G KE+ T+S + S + S + CA T
Sbjct: 426 ELVLENRMSDVVKGVYKEKDNEELTISCPVPADEQTECTSAQQLNMSTSSPCAAELTALS 485
Query: 598 RSPSPAHLPDDPKVAEKQRETHSVDRLP-------SALTATACKSVQVNGAAT----ELR 646
+ L +D V + ++ P A TA+ C + +N A E R
Sbjct: 486 TTQQEKDLIEDSSVQKDGLNQTTIPVSPPSTTKPSRASTASPCNN-NINAATAVALQEPR 544
Query: 647 KPSYAEICQRTSKEPPSSPLQPQKEQKPNTVGCGKEEKKLA--EPAERYREPPALKST-- 702
K SYAE+CQ+ KEP S +QP +E + N V K E A E+ E P +++
Sbjct: 545 KLSYAEVCQKPPKEPSSVLVQPLRELRSNVVSPTKNEDNGAPENSVEKPHEKPEARASKD 604
Query: 703 -------------PGAPRDQRRPAGGRPSPSAMGKRLSREQSTPPKSPQ 738
G R+QRR R P + +R +EQ PP+SP+
Sbjct: 605 YSGFRGNIIPRGAAGKIREQRRQFSHRAIPQGVTRRNGKEQYVPPRSPK 653
>gi|61102725 la related protein isoform 2 [Homo sapiens]
Length = 1096
Score = 55.1 bits (131), Expect = 2e-07
Identities = 27/74 (36%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 153 QEDPREVLKKTLEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDVDLIVE 212
QE ++ +K+ +E+ S +NL D +L +MD+D ++PIT +A+ ++ L+TD+ LI
Sbjct: 400 QELLKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFA 459
Query: 213 VLRSLPLVQ-VDEK 225
L+ +V+ VDEK
Sbjct: 460 ALKDSKVVEIVDEK 473
>gi|39725634 la related protein isoform 1 [Homo sapiens]
Length = 1019
Score = 55.1 bits (131), Expect = 2e-07
Identities = 27/74 (36%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 153 QEDPREVLKKTLEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDVDLIVE 212
QE ++ +K+ +E+ S +NL D +L +MD+D ++PIT +A+ ++ L+TD+ LI
Sbjct: 323 QELLKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFA 382
Query: 213 VLRSLPLVQ-VDEK 225
L+ +V+ VDEK
Sbjct: 383 ALKDSKVVEIVDEK 396
>gi|30061565 La ribonucleoprotein domain family member 2 isoform 2
[Homo sapiens]
Length = 522
Score = 52.8 bits (125), Expect = 1e-06
Identities = 27/79 (34%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 157 REVLKKTLEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDVDLIVEVLRS 216
+E +K+ +E+ S ENL D +L +MD ++PI+ +A ++ L+T+++LI+E L+
Sbjct: 216 KEYIKRQIEYYFSVENLERDFFLRGKMDEQGFLPISLIAGFQRVQALTTNLNLILEALKD 275
Query: 217 LPLVQ-VDEK-GEKVRPNQ 233
V+ VDEK +K+ P +
Sbjct: 276 STEVEIVDEKMRKKIEPEK 294
>gi|30061569 La ribonucleoprotein domain family member 2 isoform 3
[Homo sapiens]
Length = 358
Score = 52.8 bits (125), Expect = 1e-06
Identities = 27/79 (34%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 157 REVLKKTLEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDVDLIVEVLRS 216
+E +K+ +E+ S ENL D +L +MD ++PI+ +A ++ L+T+++LI+E L+
Sbjct: 216 KEYIKRQIEYYFSVENLERDFFLRGKMDEQGFLPISLIAGFQRVQALTTNLNLILEALKD 275
Query: 217 LPLVQ-VDEK-GEKVRPNQ 233
V+ VDEK +K+ P +
Sbjct: 276 STEVEIVDEKMRKKIEPEK 294
>gi|30061567 La ribonucleoprotein domain family member 2 isoform 1
[Homo sapiens]
Length = 914
Score = 52.8 bits (125), Expect = 1e-06
Identities = 27/79 (34%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 157 REVLKKTLEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDVDLIVEVLRS 216
+E +K+ +E+ S ENL D +L +MD ++PI+ +A ++ L+T+++LI+E L+
Sbjct: 216 KEYIKRQIEYYFSVENLERDFFLRGKMDEQGFLPISLIAGFQRVQALTTNLNLILEALKD 275
Query: 217 LPLVQ-VDEK-GEKVRPNQ 233
V+ VDEK +K+ P +
Sbjct: 276 STEVEIVDEKMRKKIEPEK 294
>gi|120587027 ubiquitin specific peptidase 31 [Homo sapiens]
Length = 1352
Score = 48.5 bits (114), Expect = 2e-05
Identities = 91/399 (22%), Positives = 149/399 (37%), Gaps = 56/399 (14%)
Query: 373 PPLVTPFPNTGFI------NGFTSPAFKPAASPLT--SLRQYPPRS--RNPSKSHLRHAI 422
PPL PF N I + S K +P SL + P + R+PS
Sbjct: 977 PPLSGPFDNNNQIAYVDQSDSVDSSPVKEVKAPSHPGSLAKKPESTTKRSPSSKGTSEPE 1036
Query: 423 PSAERG-PGLLESPSIFNFTADRLINGVRSPQTRQAGQTRTRIQNPSAYAKREAGPGRVE 481
S +G P L S + T+ V+ + + ++R++ + S + R + P +
Sbjct: 1037 KSLRKGRPALASQESSLSSTSPSSPLPVKV--SLKPSRSRSKADSSSRGSGRHSSPAPAQ 1094
Query: 482 PGSLESSPGLGRGRKNSFGYRKKREEKFTSSQTQSPTPPKPPSPSFELGLSSFPPLPGAA 541
P ESSP ++S +++K S+ T + + S S FPP
Sbjct: 1095 PKK-ESSPK----SQDSVSSPSPQKQKSASALTYTASSTSAKKASGPATRSPFPP----- 1144
Query: 542 GNLKTEDLFENRLSSLIIGPSKERTLSADASVNTLPVVVSREPS-------VPASCAVSA 594
G +T D +R S S + ++ + N+ V +R V +S S
Sbjct: 1145 GKSRTSDHSLSREGSRQSLGSDRASATSTSKPNSPRVSQARAGEGRGAGKHVRSSSMASL 1204
Query: 595 TYERSPSPAHLPDDPKVAEK----------QRETHSVDRLPSALTATACKSVQVNGAATE 644
+ + L D K +K Q+ET R + L TA S + G++ +
Sbjct: 1205 RSPSTSIKSGLKRDSKSEDKGLSFFKSALRQKET----RRSTDLGKTALLSKKAGGSSVK 1260
Query: 645 LRKPSYAEICQRTSKEPPSSPLQPQKEQKPNTVGCGKEEKKLAEPAERYREPPALKSTPG 704
+C+ T + QP Q+PN GKE+ +PA + + +
Sbjct: 1261 -------SVCKNTGDDEAERGHQPPASQQPNANTTGKEQLVTKDPASAKHSLLSARKSKS 1313
Query: 705 APRDQRRPA--GGRPSPSAMGKRLSREQST---PPKSPQ 738
+ D P+ GGR S K+LS T P + PQ
Sbjct: 1314 SQLDSGVPSSPGGRQSAEKSSKKLSSSMQTSARPSQKPQ 1352
>gi|109809739 La ribonucleoprotein domain family, member 7 [Homo
sapiens]
Length = 582
Score = 48.1 bits (113), Expect = 3e-05
Identities = 57/218 (26%), Positives = 91/218 (41%), Gaps = 61/218 (27%)
Query: 141 SETGGNES--QPDSQEDPREVLKKT--------------LEFCLSRENLASDMYLISQMD 184
+E+G E + +S E +EV KK ++F NL D +L Q++
Sbjct: 3 TESGNQEKVMEEESTEKKKEVEKKKRSRVKQVLADIAKQVDFWFGDANLHKDRFLREQIE 62
Query: 185 S--DQYVPITTVANLDHIKKLSTDVDLIVEVLRSLPLVQVDEKGEKVRPNQNRCIVILRE 242
D YV I+ + + + +KKL+TD LI LRS +V++D +G ++R +
Sbjct: 63 KSRDGYVDISLLVSFNKMKKLTTDGKLIARALRSSAVVELDLEGTRIRRK--------KP 114
Query: 243 ISESTPVEEVEALFKGDNLPKFINCEFA-----------------YNDNW------FITF 279
+ E P +E E + LPK +N + Y F+ F
Sbjct: 115 LGE-RPKDEDERTVYVELLPKNVNHSWIERVFGKCGNVVYISIPHYKSTGDPKGFAFVEF 173
Query: 280 ETEADAQQAYKYLR---EEV--------KTFQGKPIKA 306
ET+ A +A ++L EE KT + KPI A
Sbjct: 174 ETKEQAAKAIEFLNNPPEEAPRKPGIFPKTVKNKPIPA 211
>gi|109809741 La ribonucleoprotein domain family, member 7 [Homo
sapiens]
Length = 582
Score = 48.1 bits (113), Expect = 3e-05
Identities = 57/218 (26%), Positives = 91/218 (41%), Gaps = 61/218 (27%)
Query: 141 SETGGNES--QPDSQEDPREVLKKT--------------LEFCLSRENLASDMYLISQMD 184
+E+G E + +S E +EV KK ++F NL D +L Q++
Sbjct: 3 TESGNQEKVMEEESTEKKKEVEKKKRSRVKQVLADIAKQVDFWFGDANLHKDRFLREQIE 62
Query: 185 S--DQYVPITTVANLDHIKKLSTDVDLIVEVLRSLPLVQVDEKGEKVRPNQNRCIVILRE 242
D YV I+ + + + +KKL+TD LI LRS +V++D +G ++R +
Sbjct: 63 KSRDGYVDISLLVSFNKMKKLTTDGKLIARALRSSAVVELDLEGTRIRRK--------KP 114
Query: 243 ISESTPVEEVEALFKGDNLPKFINCEFA-----------------YNDNW------FITF 279
+ E P +E E + LPK +N + Y F+ F
Sbjct: 115 LGE-RPKDEDERTVYVELLPKNVNHSWIERVFGKCGNVVYISIPHYKSTGDPKGFAFVEF 173
Query: 280 ETEADAQQAYKYLR---EEV--------KTFQGKPIKA 306
ET+ A +A ++L EE KT + KPI A
Sbjct: 174 ETKEQAAKAIEFLNNPPEEAPRKPGIFPKTVKNKPIPA 211
>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
Length = 953
Score = 47.4 bits (111), Expect = 5e-05
Identities = 75/338 (22%), Positives = 126/338 (37%), Gaps = 60/338 (17%)
Query: 409 RSRNPSKSHLRHAIPSAERGPGLLESPSIFNFTADRLINGVRSPQTRQAGQTRTRIQNPS 468
RS++P K PS R + S + R + S + ++R+R + S
Sbjct: 521 RSKSPKKKLGVSVSPSRARRRRKTSASSASASNSSRSSSRSSSYSGSGSSRSRSRSSSYS 580
Query: 469 AYAKREAGPGRVEPGSLESSPGLGRGRKNSFGYRKKREEKFTSSQTQSPTPPKPPSPSFE 528
+Y+ R + R +SF + R F+SS + SPT P P PS
Sbjct: 581 SYSSRSS-------------------RHSSFSGSRSRSRSFSSSPSPSPT-PSPHRPSIR 620
Query: 529 LGLSSFPPLPGAAGNLKTEDLFENRLSSLIIGPSKERTLSADASVNTLPVVVSREPSVPA 588
PP PG AG E + P+ + A+ T PV +P P
Sbjct: 621 TKGEPAPP-PGKAG--------EKSVKKPAPPPAPPQ-----ATKTTAPVPEPTKPGDPR 666
Query: 589 SCAVSATYERSP--------SPAHLPDDPKVAEKQRETHSVDRLPSALTATACKSVQVNG 640
R+P S + + + + SV + S +AT+ S +
Sbjct: 667 EARRKERPARTPPRRRTLSGSGSGSGSSYSGSSSRSRSLSVSSVSSVSSATSSSSSAHSV 726
Query: 641 AATELRKPSYAEICQRTSKEPPSSPLQPQKEQKPNTVGCGKEEKKLAEPAERYREPPALK 700
+ ++ + + +S+ P +P Q +KE+ GK +K+ E+ +
Sbjct: 727 DSEDMYADLASPVSSASSRSP--APAQTRKEK-------GKSKKEDGVKEEKRKR----D 773
Query: 701 STPGAPRDQRRPAGGRPSPSAMGKRLSREQSTPPKSPQ 738
S+ P+ + PAGG+ S ++ S Q PP PQ
Sbjct: 774 SSTQPPKSAKPPAGGKSS-----QQPSTPQQAPPGQPQ 806
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 47.0 bits (110), Expect = 6e-05
Identities = 89/385 (23%), Positives = 119/385 (30%), Gaps = 46/385 (11%)
Query: 373 PPLVTPFPNTGFINGFTSPAFKPAASPLTSLRQYPPRSRNPSKSHLRHAIPSAERGPGLL 432
PP VTP SP PAA+P PP + PS A P + P
Sbjct: 1011 PPAVTP----------PSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTP 1060
Query: 433 ES--PSIFNFTADRLINGVRSPQTRQAGQTRTRIQNPSAYAKREAGPGRVEP----GSLE 486
+ PS A + G +P + PS K P P G L
Sbjct: 1061 AATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSP--KGAPMPPAATPPSPKGGLA 1118
Query: 487 SSPGLGRGRKNSFGYRKKREEKFTSSQTQSPTPPKPPSPSFELGLSSFPPL--------- 537
+ P G + + T +PT P PS + GL++ PP
Sbjct: 1119 TPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAAT 1178
Query: 538 -PGAAGNLKTEDLFENRLSSLIIGPSKERTLSADASVNTLPVVVSREPSVPASCAVSATY 596
P G L T + PS + L+ + + PS A +
Sbjct: 1179 PPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPK 1238
Query: 597 ERSPSPAHLPDDPKVAEKQRETHSVDRLPSALTATACKSVQVNGAATELRK--PSYAEIC 654
+PA P PK P+A T + K G AT K P+ A +
Sbjct: 1239 GAPTTPAATPPSPKGGPATPPPKGAPTPPAA-TPPSLKG----GLATPPHKGAPNPAVVT 1293
Query: 655 QRTSK-----EPPSSPLQPQKEQKPNTVGCGKEEKKLAEPAERYREPPALKSTPGAPRDQ 709
+ K PP P P+ G P PP+ K TP P
Sbjct: 1294 PPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATT 1353
Query: 710 RRPAGGRPSPSAMGKRLSREQSTPP 734
GG +PS S+E TPP
Sbjct: 1354 PSSKGGPTTPS------SKEGPTPP 1372
Score = 32.3 bits (72), Expect = 1.6
Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 18/128 (14%)
Query: 24 SAHLMNGPISQTTSQTSSIPPLSQVPATKVSELNPNAEVWGAPVLHL--EASSAADGVSA 81
+A GP QT +++ PP+ P+ K P + V AP+L + ++S A G A
Sbjct: 1697 TAPTRKGP--QTKKSSATSPPICPDPSAKNGSKGPLSTVAPAPLLPVQKDSSKTAKGKDA 1754
Query: 82 AWEEVAGHHADRGPQG---SDANGDGDQGHENAALPDPQESD----PADMNALALGPSEY 134
+ H+ +GP S A+ LP P+ + P+ +L L PS
Sbjct: 1755 S-------HSPKGPLAPPESKASTPLTAAAFEKVLPKPESASVSAAPSPPVSLPLAPSPV 1807
Query: 135 DSLPENSE 142
+LP +
Sbjct: 1808 PTLPPKQQ 1815
Score = 30.0 bits (66), Expect = 8.1
Identities = 103/425 (24%), Positives = 143/425 (33%), Gaps = 79/425 (18%)
Query: 344 PPMYSPQQQF-PLYSLI-TPQTWSATHSYLDPPLVTPFPNTGFINGFT-SPAFKPAASPL 400
P SPQ PL +L+ P+ + S PP TP P T ++G + + A P AS
Sbjct: 709 PVAPSPQNTCAPLATLVLAPEIPKSVPSPSLPPAGTP-PGTKKVDGISHTSALAPVAS-- 765
Query: 401 TSLRQYPPRSRNPSKSHLRHAIPSAERGP--GLLESPSIFNFTADRLINGVRSPQTRQAG 458
S ++ P S + ++ +G L +SPS + SPQT++
Sbjct: 766 -SPKECPTEDSGASAT-------ASSKGTLTYLADSPSPLGVSV--------SPQTKRP- 808
Query: 459 QTRTRIQNPSAYAKREAGPGRVEPGSLESSPGLGRGRKNSFGYRKKREEKFTSSQTQSPT 518
T+ P + P V P P +NS ++ ++ T T SPT
Sbjct: 809 PTKKGSAGPDTPIGNLSSP--VSPVEASFLP------ENSLSFQGSKDSPAT---THSPT 857
Query: 519 PPKP---PSPSFELGLS----SFPP----------LP-GAAGNLKTEDLFENRLSSLIIG 560
PP P P+PS LS + PP LP G LS
Sbjct: 858 PPSPKGAPTPSAVTPLSPKGVTLPPKETPTPSVVNLPFPKEGPATPAPKQAPALSMTSSS 917
Query: 561 PSKERT------LSADASVNTLPVVVSREPSVPASCAVSATYERSPS-PAHLPDDPKVAE 613
P K R + A S P + P P + + + +P+ PA P PK
Sbjct: 918 PKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGP 977
Query: 614 KQRETHSVDRLPSALTATACKSVQVNGAATELRKPSYAEICQRTSKEPPSSPLQPQKEQK 673
P+A + G AT PS + PPS P
Sbjct: 978 ATPSPKGAPTPPAATPPS-----PKGGPAT----PSPKGAPTPPAVTPPSPKGSPAATPF 1028
Query: 674 PNTVGCGKEEKKLAEPAERYREPPALKSTPGAPRDQR----RPAGGRPSPSAMGKRLSRE 729
P G A P P A GAP P GG +PS G +
Sbjct: 1029 PK----GASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAP-TPP 1083
Query: 730 QSTPP 734
+TPP
Sbjct: 1084 AATPP 1088
>gi|47933339 RNA binding motif protein 15 [Homo sapiens]
Length = 977
Score = 43.9 bits (102), Expect = 5e-04
Identities = 42/139 (30%), Positives = 54/139 (38%), Gaps = 30/139 (21%)
Query: 408 PRSRNPSKSHLRHAIPSAERGPGLLESPSIFNFTADRLINGVRSPQTRQAGQTRTRIQNP 467
P S P K RH PS +R P L S +N DR +R ++ P
Sbjct: 657 PESDRPRK---RHCAPSPDRSPELSSSRDRYNSDNDR--------------SSRLLLERP 699
Query: 468 SAYAKREAGPGRVEPGSLESSPGLGRGRKNSFGYRKKREEKFTSSQTQSPTPPKPPSPSF 527
S P R GSLE S G R RKNS + R+ + T +PT K P
Sbjct: 700 S--------PIRDRRGSLEKSQGDKRDRKNSASAERDRKHR-----TTAPTEGKSPLKKE 746
Query: 528 ELGLSSFPPLPGAAGNLKT 546
+ S P A+ LK+
Sbjct: 747 DRSDGSAPSTSTASSKLKS 765
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 43.9 bits (102), Expect = 5e-04
Identities = 112/508 (22%), Positives = 180/508 (35%), Gaps = 80/508 (15%)
Query: 280 ETEADAQQAYKYLREEVK-----TFQGKPIKARIKAKAIAINTFLPKNGFRPLDVSLYAQ 334
++E A Q +L E+K F+ P A ++ ++ + ++V A
Sbjct: 1244 KSEEPAGQILSHLSSELKEMSTSNFESSPEVEERPAVSLTLDQSQSQASLEAVEVPSMA- 1302
Query: 335 QRYATSFYFPPMYSPQQQFPLYSLITPQTWSATHSYLDPPLVTPFPNTGFINGFTSPAFK 394
S + P +SP+ + S + ++ + + + + NTGF +
Sbjct: 1303 -----SSWGGPHFSPEHKELSNSPLRENSFGSPLEFRNSGPLGTEMNTGFSSEVKEDLNG 1357
Query: 395 P-----AASPLTSLRQYPPRSRNPSKSHLRHAIPSAERGPGLLESPSIFNFTADRL---- 445
P P +++ RS S S L P A G+ + SI + D +
Sbjct: 1358 PFLNQLETDPSLDMKEQSTRSSGHSSSELS---PDAVEKAGMSSNQSISSPVLDAVPRTP 1414
Query: 446 ----INGVRSPQTRQAGQTRT---RIQNPSAYAKREAGPGRVEPGSLE-SSPGL------ 491
+ SP+ + G RT R ++ S+ R+ G G SL SSPG+
Sbjct: 1415 SRERSSSASSPEMKD-GLPRTPSRRSRSGSSPGLRD-GSGTPSRHSLSGSSPGMKDIPRT 1472
Query: 492 -GRGRKNSFGYRKKREEKFTSSQTQSPTPPKPPSPSFELGLSSFPPLPGAAGNLKTED-- 548
RGR E QT P P SP EL P +G+ + D
Sbjct: 1473 PSRGRSEC----DSSPEPKALPQTPRPRSRSPSSP--ELNNKCLTPQRERSGSESSVDQK 1526
Query: 549 ------LFENRLSS----LIIGPS------KERTLSADASVNTLPVVVSRE-----PSVP 587
L + S L + PS E S D+ T + R P V
Sbjct: 1527 TVARTPLGQRSRSGSSQELDVKPSASPQERSESDSSPDSKAKTRTPLRQRSRSGSSPEVD 1586
Query: 588 ASCAVSATYERSPSPAHLPDDPKVAEKQRETHSVDRLPSALTATACKSVQVNGAATELRK 647
+ +S RS S + D P+ A + + P A A +G++++ R
Sbjct: 1587 SKSRLSPRRSRSGSSPEVKDKPRAAPRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRG 1646
Query: 648 PSYAEICQRTSKEPPSSPLQPQKEQKPNTVGCGKEEKKLAEPAERYREPPALKSTPGAPR 707
PS S SSP P K + + + EP + R PP +S+ +P
Sbjct: 1647 PS-----PEGSSSTESSPEHPPKSRTAR-----RGSRSSPEPKTKSRTPPRRRSSRSSPE 1696
Query: 708 DQRRPAGGRPSPSAMGKRLSREQSTPPK 735
R+ R S SA +R + TPP+
Sbjct: 1697 LTRKARLSRRSRSASSSPETRSR-TPPR 1723
Score = 38.1 bits (87), Expect = 0.030
Identities = 89/394 (22%), Positives = 135/394 (34%), Gaps = 64/394 (16%)
Query: 359 ITPQTWSATHSYLDPPLVTPFPNTGFINGFTSPAFKPAASPLTSLRQYPPRSRNPSKSHL 418
+TPQ S S DP L + P+ +G + P K + P RQ P RS +P + +
Sbjct: 865 VTPQRRSCFESSPDPELKSRTPSRHSCSGSSPPRVKSSTPP----RQSPSRSSSP-QPKV 919
Query: 419 RHAIPSAERGPGLLESPSIFNFTADRLINGVRSPQTRQAGQTRTRIQNPSAYAKREAGPG 478
+ I +R SPS S T + R+R +P + + P
Sbjct: 920 KAIISPRQRSHSGSSSPS-------------PSRVTSRTTPRRSRSVSPCSNVESRLLPR 966
Query: 479 RVEPGSLESSPGLGRGRKNSFGYRKKREEKFTSSQTQSPTP-PKPPSPSFELGLSSFPPL 537
GS SSP + K E S + S +P PK + + PP
Sbjct: 967 YSHSGS--SSPDT----------KVKPETPPRQSHSGSISPYPKVKAQT--------PPG 1006
Query: 538 PGAAGNLKTEDLFENRLSSLIIGPSKERTLSADASVNTLPVVVSREPSVPASCAVSATYE 597
P +G+ K+ E SL+ +L A +T P S ++ +
Sbjct: 1007 PSLSGS-KSPCPQEKSKDSLVQSCPGSLSLCAGVKSSTPP-----GESYFGVSSLQLKGQ 1060
Query: 598 RSPSPAHLPDDPKVAEKQRETHSVDRLPSALTATACKSVQVNGAATELRKPS-------- 649
SP H D +Q + S + T+ + + TEL S
Sbjct: 1061 SQTSPDHRSDTSSPEVRQSHSESPSLQSKSQTSPKGGRSRSSSPVTELASRSPIRQDRGE 1120
Query: 650 -YAEICQRTSKEPPSSPLQPQKEQKPNTVG---CGKEEKKLAEPAERYREPPALKSTPGA 705
A ++ P S Q P G+ + AE E+ PP +T
Sbjct: 1121 FSASPMLKSGMSPEQSRFQSDSSSYPTVDSNSLLGQSRLETAESKEKMALPPQEDATASP 1180
Query: 706 PRDQRR----PAGGRPSPSAMGKRLSREQSTPPK 735
PR + + P RP S + K R TPP+
Sbjct: 1181 PRQKDKFSPFPVQDRPESSLVFKDTLR---TPPR 1211
Score = 37.0 bits (84), Expect = 0.066
Identities = 75/357 (21%), Positives = 120/357 (33%), Gaps = 37/357 (10%)
Query: 404 RQYPPRSRNPSKSHLRHAIPSAERGPGLLESPSIFNFTADRLINGVRSPQTRQAGQTRT- 462
R P+S+ SK R S P + + + + RS A +T T
Sbjct: 230 RSPTPKSKRKSKDKKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTT 289
Query: 463 ----RIQNPSAYAKREAGPGRVEPGSLE----SSPGLGRGRKNSFGYRKKREEKFTSSQT 514
R +P++ + E EPG+ SSP + +S K +++K S+
Sbjct: 290 ALAGRSPSPASGRRGEGDAPFSEPGTTSTQRPSSPETATKQPSSPYEDKDKDKKEKSATR 349
Query: 515 QSPTP------PKPPSPSFELGLSSFPPLPGAAGNLKTEDLFENRLSSLIIGPSKE---- 564
SP+P P+PP+P+ PL + L LS + P E
Sbjct: 350 PSPSPERSSTGPEPPAPT---------PLLAERHGGSPQPLATTPLSQEPVNPPSEASPT 400
Query: 565 RTLSADASVNTLPVVVSREPSVPASCAVSATYERSPSPAHLPDDPKVAEKQRETHSVDRL 624
R S S LP S E S P+ + S S P+ PK A +
Sbjct: 401 RDRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHASSS----PESPKPAPAPGSHREISSS 456
Query: 625 PSALTATACKSVQVNGAATELRKPSYAEICQRTSKEPPSSPLQPQKEQKPNTVGCGKEEK 684
P++ + ++ + + + T+K S P K +
Sbjct: 457 PTSKNRSHGRAKRDKSHSHTPSRRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRS 516
Query: 685 KLAEPAERYREP-----PALKSTPGAPRDQRRPAGGRPSPSAMGKRLSREQSTPPKS 736
+ A+ R R P PG R + GR + G+ SR +T +S
Sbjct: 517 RSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRS 573
Score = 32.3 bits (72), Expect = 1.6
Identities = 40/170 (23%), Positives = 62/170 (36%), Gaps = 22/170 (12%)
Query: 581 SREPSVPASCAV-------SATYERSPSPA------HLPDDPKVAEKQRETHSVDRLPSA 627
S EP PA A+ S++ R PSP P+ P + R P
Sbjct: 1621 SPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTESSPEHPPKSRTARRGSRSSPEPKT 1680
Query: 628 LTATACKSVQVNGAATELRKPSYAEICQRTSKEPPSSPLQPQKEQKPNTVGCGKEEKKLA 687
+ T + + RK + + S P + P + ++ +V
Sbjct: 1681 KSRTPPRRRSSRSSPELTRKARLSRRSRSASSSPETRSRTPPRHRRSPSVSS-------P 1733
Query: 688 EPAERYREPPALKSTPGAPRDQRRPAGGR-PSPSAMGKRLSREQSTPPKS 736
EPAE+ R +S +PR + GR PSP G + SR +S K+
Sbjct: 1734 EPAEKSRSSRRRRSA-SSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKT 1782
>gi|189181724 proteoglycan 4 isoform D [Homo sapiens]
Length = 1270
Score = 43.1 bits (100), Expect = 0.001
Identities = 74/351 (21%), Positives = 122/351 (34%), Gaps = 23/351 (6%)
Query: 373 PPLVTPFPNTGFINGFTSPAFKPAASPLTSLRQYPPRSRNPSKSHLRHAIPSAERGPGLL 432
P P P T T+P KPA P T P + P+ + + P+ + P
Sbjct: 335 PTTKEPAPTTPKEPAPTAPK-KPA--PTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPT 391
Query: 433 ESPSIFNFTADRLINGVRSPQTRQAGQTRTRIQNPSAYAKREAGPGRVEPGSLESSPGLG 492
+ S T + +S T + T + P+ +E P + P
Sbjct: 392 TTKSAPTTTKEPAPTTTKSAPTTPKEPSPTTTKEPAPTTPKEPAP------TTPKKPAPT 445
Query: 493 RGRKNSFGYRKKREEKFTSSQTQSPTPPKPPSPSFELGLSSFPPLPGAAGNLKTEDLFEN 552
++ + +E T+++ +PT PK P+P+ + P P E L
Sbjct: 446 TPKEPA--PTTPKEPAPTTTKKPAPTTPKEPAPTTPK--ETAPTTPKKLTPTTPEKLAPT 501
Query: 553 RLSSLIIGPSKERTLSADASVNTLPVVVSRE-PSVPASCAVSATYERSPSPAHLPDDPKV 611
P+ L+ P P+ P + A + E +P+ P P
Sbjct: 502 TPEKP--APTTPEELAPTTPEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTTPKEPA-PTT 558
Query: 612 AEKQRETHSVDRLPSALTATACKSVQVNGAATELRKPSYAEICQRTSKEPPSSPLQPQKE 671
++ T + P+ TA +++ A T +KP+ E+ T+KEP S+
Sbjct: 559 PKEPAPTTPKETAPTTPKGTAPTTLK-EPAPTTPKKPAPKELAPTTTKEPTSTTCDKPAP 617
Query: 672 QKPNTVGCGKEEKKLAEPAERYREPPALKSTPG-APRDQRRPAGGRPSPSA 721
P G EPA + PA + G AP + PA P A
Sbjct: 618 TTPK----GTAPTTPKEPAPTTPKEPAPTTPKGTAPTTLKEPAPTTPKKPA 664
Score = 34.7 bits (78), Expect = 0.33
Identities = 75/361 (20%), Positives = 127/361 (35%), Gaps = 40/361 (11%)
Query: 397 ASPLTSLRQYPPRSRNPSKSHLRHAIPSAERGPGLLESPSIFNFTADRLINGVRSPQ-TR 455
++P T P ++ P+ + + P+ + P + S + + P T
Sbjct: 254 SAPTTPKEPAPTTTKEPAPTTPKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTT 313
Query: 456 QAGQTRTRIQNPSAYAKREAGPGRVEPG-SLESSPGLGRGRKNSFGYRKK------REEK 508
T + P+ +E P EP + P +K + K+ +E
Sbjct: 314 PKEPAPTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPA 373
Query: 509 FTSSQTQSPTPPKPPSPSF--ELGLSSFPPLPGAAGNLKTEDLFENRLSSLIIGPSKERT 566
T+++ SPT PK P+P+ ++ P P + T + ++ P+ +
Sbjct: 374 PTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPSPTTTKEPAPTTPKE 433
Query: 567 LSADASVNTLPVVVSREPSVPASCAVSATYERSPSPAHLPDDPKVAEKQRETHSVDRLPS 626
+ P +EP+ + T + P+P PK + P
Sbjct: 434 PAPTTPKKPAP-TTPKEPAPTTPKEPAPTTTKKPAPT----TPKEPAPTTPKETAPTTPK 488
Query: 627 ALTATACKSVQVNGAATELRKPSYA---EICQRTSKEP-PSSPLQP----QKEQKPNTVG 678
LT T + + A T KP+ E+ T +EP P++P +P K PNT
Sbjct: 489 KLTPTTPEKL----APTTPEKPAPTTPEELAPTTPEEPTPTTPEEPAPTTPKAAAPNTP- 543
Query: 679 CGKEEKKLAEPAERYREPPALKSTP--GAPRDQRRPAGGRPSPSAMGKRLSREQSTPPKS 736
EPA + PA +TP AP + A P +A L T PK
Sbjct: 544 --------KEPAPTTPKEPA-PTTPKEPAPTTPKETAPTTPKGTA-PTTLKEPAPTTPKK 593
Query: 737 P 737
P
Sbjct: 594 P 594
>gi|189181722 proteoglycan 4 isoform C [Homo sapiens]
Length = 1311
Score = 43.1 bits (100), Expect = 0.001
Identities = 74/351 (21%), Positives = 122/351 (34%), Gaps = 23/351 (6%)
Query: 373 PPLVTPFPNTGFINGFTSPAFKPAASPLTSLRQYPPRSRNPSKSHLRHAIPSAERGPGLL 432
P P P T T+P KPA P T P + P+ + + P+ + P
Sbjct: 376 PTTKEPAPTTPKEPAPTAPK-KPA--PTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPT 432
Query: 433 ESPSIFNFTADRLINGVRSPQTRQAGQTRTRIQNPSAYAKREAGPGRVEPGSLESSPGLG 492
+ S T + +S T + T + P+ +E P + P
Sbjct: 433 TTKSAPTTTKEPAPTTTKSAPTTPKEPSPTTTKEPAPTTPKEPAP------TTPKKPAPT 486
Query: 493 RGRKNSFGYRKKREEKFTSSQTQSPTPPKPPSPSFELGLSSFPPLPGAAGNLKTEDLFEN 552
++ + +E T+++ +PT PK P+P+ + P P E L
Sbjct: 487 TPKEPA--PTTPKEPAPTTTKKPAPTTPKEPAPTTPK--ETAPTTPKKLTPTTPEKLAPT 542
Query: 553 RLSSLIIGPSKERTLSADASVNTLPVVVSRE-PSVPASCAVSATYERSPSPAHLPDDPKV 611
P+ L+ P P+ P + A + E +P+ P P
Sbjct: 543 TPEKP--APTTPEELAPTTPEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTTPKEPA-PTT 599
Query: 612 AEKQRETHSVDRLPSALTATACKSVQVNGAATELRKPSYAEICQRTSKEPPSSPLQPQKE 671
++ T + P+ TA +++ A T +KP+ E+ T+KEP S+
Sbjct: 600 PKEPAPTTPKETAPTTPKGTAPTTLK-EPAPTTPKKPAPKELAPTTTKEPTSTTCDKPAP 658
Query: 672 QKPNTVGCGKEEKKLAEPAERYREPPALKSTPG-APRDQRRPAGGRPSPSA 721
P G EPA + PA + G AP + PA P A
Sbjct: 659 TTPK----GTAPTTPKEPAPTTPKEPAPTTPKGTAPTTLKEPAPTTPKKPA 705
Score = 34.7 bits (78), Expect = 0.33
Identities = 75/361 (20%), Positives = 127/361 (35%), Gaps = 40/361 (11%)
Query: 397 ASPLTSLRQYPPRSRNPSKSHLRHAIPSAERGPGLLESPSIFNFTADRLINGVRSPQ-TR 455
++P T P ++ P+ + + P+ + P + S + + P T
Sbjct: 295 SAPTTPKEPAPTTTKEPAPTTPKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTT 354
Query: 456 QAGQTRTRIQNPSAYAKREAGPGRVEPG-SLESSPGLGRGRKNSFGYRKK------REEK 508
T + P+ +E P EP + P +K + K+ +E
Sbjct: 355 PKEPAPTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPA 414
Query: 509 FTSSQTQSPTPPKPPSPSF--ELGLSSFPPLPGAAGNLKTEDLFENRLSSLIIGPSKERT 566
T+++ SPT PK P+P+ ++ P P + T + ++ P+ +
Sbjct: 415 PTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPSPTTTKEPAPTTPKE 474
Query: 567 LSADASVNTLPVVVSREPSVPASCAVSATYERSPSPAHLPDDPKVAEKQRETHSVDRLPS 626
+ P +EP+ + T + P+P PK + P
Sbjct: 475 PAPTTPKKPAP-TTPKEPAPTTPKEPAPTTTKKPAPT----TPKEPAPTTPKETAPTTPK 529
Query: 627 ALTATACKSVQVNGAATELRKPSYA---EICQRTSKEP-PSSPLQP----QKEQKPNTVG 678
LT T + + A T KP+ E+ T +EP P++P +P K PNT
Sbjct: 530 KLTPTTPEKL----APTTPEKPAPTTPEELAPTTPEEPTPTTPEEPAPTTPKAAAPNTP- 584
Query: 679 CGKEEKKLAEPAERYREPPALKSTP--GAPRDQRRPAGGRPSPSAMGKRLSREQSTPPKS 736
EPA + PA +TP AP + A P +A L T PK
Sbjct: 585 --------KEPAPTTPKEPA-PTTPKEPAPTTPKETAPTTPKGTA-PTTLKEPAPTTPKK 634
Query: 737 P 737
P
Sbjct: 635 P 635
>gi|189181720 proteoglycan 4 isoform B [Homo sapiens]
Length = 1363
Score = 43.1 bits (100), Expect = 0.001
Identities = 74/351 (21%), Positives = 122/351 (34%), Gaps = 23/351 (6%)
Query: 373 PPLVTPFPNTGFINGFTSPAFKPAASPLTSLRQYPPRSRNPSKSHLRHAIPSAERGPGLL 432
P P P T T+P KPA P T P + P+ + + P+ + P
Sbjct: 428 PTTKEPAPTTPKEPAPTAPK-KPA--PTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPT 484
Query: 433 ESPSIFNFTADRLINGVRSPQTRQAGQTRTRIQNPSAYAKREAGPGRVEPGSLESSPGLG 492
+ S T + +S T + T + P+ +E P + P
Sbjct: 485 TTKSAPTTTKEPAPTTTKSAPTTPKEPSPTTTKEPAPTTPKEPAP------TTPKKPAPT 538
Query: 493 RGRKNSFGYRKKREEKFTSSQTQSPTPPKPPSPSFELGLSSFPPLPGAAGNLKTEDLFEN 552
++ + +E T+++ +PT PK P+P+ + P P E L
Sbjct: 539 TPKEPA--PTTPKEPAPTTTKKPAPTTPKEPAPTTPK--ETAPTTPKKLTPTTPEKLAPT 594
Query: 553 RLSSLIIGPSKERTLSADASVNTLPVVVSRE-PSVPASCAVSATYERSPSPAHLPDDPKV 611
P+ L+ P P+ P + A + E +P+ P P
Sbjct: 595 TPEKP--APTTPEELAPTTPEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTTPKEPA-PTT 651
Query: 612 AEKQRETHSVDRLPSALTATACKSVQVNGAATELRKPSYAEICQRTSKEPPSSPLQPQKE 671
++ T + P+ TA +++ A T +KP+ E+ T+KEP S+
Sbjct: 652 PKEPAPTTPKETAPTTPKGTAPTTLK-EPAPTTPKKPAPKELAPTTTKEPTSTTCDKPAP 710
Query: 672 QKPNTVGCGKEEKKLAEPAERYREPPALKSTPG-APRDQRRPAGGRPSPSA 721
P G EPA + PA + G AP + PA P A
Sbjct: 711 TTPK----GTAPTTPKEPAPTTPKEPAPTTPKGTAPTTLKEPAPTTPKKPA 757
Score = 34.7 bits (78), Expect = 0.33
Identities = 75/361 (20%), Positives = 127/361 (35%), Gaps = 40/361 (11%)
Query: 397 ASPLTSLRQYPPRSRNPSKSHLRHAIPSAERGPGLLESPSIFNFTADRLINGVRSPQ-TR 455
++P T P ++ P+ + + P+ + P + S + + P T
Sbjct: 347 SAPTTPKEPAPTTTKEPAPTTPKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTT 406
Query: 456 QAGQTRTRIQNPSAYAKREAGPGRVEPG-SLESSPGLGRGRKNSFGYRKK------REEK 508
T + P+ +E P EP + P +K + K+ +E
Sbjct: 407 PKEPAPTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPA 466
Query: 509 FTSSQTQSPTPPKPPSPSF--ELGLSSFPPLPGAAGNLKTEDLFENRLSSLIIGPSKERT 566
T+++ SPT PK P+P+ ++ P P + T + ++ P+ +
Sbjct: 467 PTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPSPTTTKEPAPTTPKE 526
Query: 567 LSADASVNTLPVVVSREPSVPASCAVSATYERSPSPAHLPDDPKVAEKQRETHSVDRLPS 626
+ P +EP+ + T + P+P PK + P
Sbjct: 527 PAPTTPKKPAP-TTPKEPAPTTPKEPAPTTTKKPAPT----TPKEPAPTTPKETAPTTPK 581
Query: 627 ALTATACKSVQVNGAATELRKPSYA---EICQRTSKEP-PSSPLQP----QKEQKPNTVG 678
LT T + + A T KP+ E+ T +EP P++P +P K PNT
Sbjct: 582 KLTPTTPEKL----APTTPEKPAPTTPEELAPTTPEEPTPTTPEEPAPTTPKAAAPNTP- 636
Query: 679 CGKEEKKLAEPAERYREPPALKSTP--GAPRDQRRPAGGRPSPSAMGKRLSREQSTPPKS 736
EPA + PA +TP AP + A P +A L T PK
Sbjct: 637 --------KEPAPTTPKEPA-PTTPKEPAPTTPKETAPTTPKGTA-PTTLKEPAPTTPKK 686
Query: 737 P 737
P
Sbjct: 687 P 687
>gi|67190163 proteoglycan 4 isoform A [Homo sapiens]
Length = 1404
Score = 43.1 bits (100), Expect = 0.001
Identities = 74/351 (21%), Positives = 122/351 (34%), Gaps = 23/351 (6%)
Query: 373 PPLVTPFPNTGFINGFTSPAFKPAASPLTSLRQYPPRSRNPSKSHLRHAIPSAERGPGLL 432
P P P T T+P KPA P T P + P+ + + P+ + P
Sbjct: 469 PTTKEPAPTTPKEPAPTAPK-KPA--PTTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPT 525
Query: 433 ESPSIFNFTADRLINGVRSPQTRQAGQTRTRIQNPSAYAKREAGPGRVEPGSLESSPGLG 492
+ S T + +S T + T + P+ +E P + P
Sbjct: 526 TTKSAPTTTKEPAPTTTKSAPTTPKEPSPTTTKEPAPTTPKEPAP------TTPKKPAPT 579
Query: 493 RGRKNSFGYRKKREEKFTSSQTQSPTPPKPPSPSFELGLSSFPPLPGAAGNLKTEDLFEN 552
++ + +E T+++ +PT PK P+P+ + P P E L
Sbjct: 580 TPKEPA--PTTPKEPAPTTTKKPAPTTPKEPAPTTPK--ETAPTTPKKLTPTTPEKLAPT 635
Query: 553 RLSSLIIGPSKERTLSADASVNTLPVVVSRE-PSVPASCAVSATYERSPSPAHLPDDPKV 611
P+ L+ P P+ P + A + E +P+ P P
Sbjct: 636 TPEKP--APTTPEELAPTTPEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTTPKEPA-PTT 692
Query: 612 AEKQRETHSVDRLPSALTATACKSVQVNGAATELRKPSYAEICQRTSKEPPSSPLQPQKE 671
++ T + P+ TA +++ A T +KP+ E+ T+KEP S+
Sbjct: 693 PKEPAPTTPKETAPTTPKGTAPTTLK-EPAPTTPKKPAPKELAPTTTKEPTSTTCDKPAP 751
Query: 672 QKPNTVGCGKEEKKLAEPAERYREPPALKSTPG-APRDQRRPAGGRPSPSA 721
P G EPA + PA + G AP + PA P A
Sbjct: 752 TTPK----GTAPTTPKEPAPTTPKEPAPTTPKGTAPTTLKEPAPTTPKKPA 798
Score = 34.7 bits (78), Expect = 0.33
Identities = 75/361 (20%), Positives = 127/361 (35%), Gaps = 40/361 (11%)
Query: 397 ASPLTSLRQYPPRSRNPSKSHLRHAIPSAERGPGLLESPSIFNFTADRLINGVRSPQ-TR 455
++P T P ++ P+ + + P+ + P + S + + P T
Sbjct: 388 SAPTTPKEPAPTTTKEPAPTTPKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTT 447
Query: 456 QAGQTRTRIQNPSAYAKREAGPGRVEPG-SLESSPGLGRGRKNSFGYRKK------REEK 508
T + P+ +E P EP + P +K + K+ +E
Sbjct: 448 PKEPAPTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAPTTPKEPA 507
Query: 509 FTSSQTQSPTPPKPPSPSF--ELGLSSFPPLPGAAGNLKTEDLFENRLSSLIIGPSKERT 566
T+++ SPT PK P+P+ ++ P P + T + ++ P+ +
Sbjct: 508 PTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPSPTTTKEPAPTTPKE 567
Query: 567 LSADASVNTLPVVVSREPSVPASCAVSATYERSPSPAHLPDDPKVAEKQRETHSVDRLPS 626
+ P +EP+ + T + P+P PK + P
Sbjct: 568 PAPTTPKKPAP-TTPKEPAPTTPKEPAPTTTKKPAPT----TPKEPAPTTPKETAPTTPK 622
Query: 627 ALTATACKSVQVNGAATELRKPSYA---EICQRTSKEP-PSSPLQP----QKEQKPNTVG 678
LT T + + A T KP+ E+ T +EP P++P +P K PNT
Sbjct: 623 KLTPTTPEKL----APTTPEKPAPTTPEELAPTTPEEPTPTTPEEPAPTTPKAAAPNTP- 677
Query: 679 CGKEEKKLAEPAERYREPPALKSTP--GAPRDQRRPAGGRPSPSAMGKRLSREQSTPPKS 736
EPA + PA +TP AP + A P +A L T PK
Sbjct: 678 --------KEPAPTTPKEPA-PTTPKEPAPTTPKETAPTTPKGTA-PTTLKEPAPTTPKK 727
Query: 737 P 737
P
Sbjct: 728 P 728
>gi|193083183 synaptopodin 2 isoform a [Homo sapiens]
Length = 1261
Score = 43.1 bits (100), Expect = 0.001
Identities = 86/388 (22%), Positives = 128/388 (32%), Gaps = 53/388 (13%)
Query: 373 PPLVTPFPNTGFINGFTSPAFKPAASPLTSLRQYPP-RSRNPSKSHLRHAIPSAERGPGL 431
PP V P P + P SP + Q P + NPSK + +I A+
Sbjct: 756 PPPVAPKPAVKSSSSQPVTPVSPVWSPGVAPTQPPAFPTSNPSKGTVVSSIKIAQPSYPP 815
Query: 432 LESPSIFNFTADRLINGVRSPQTRQAGQTRTRIQNPSAYAKREAGPGRVEPGSLESSPGL 491
S N + PQ A Q T S PG V P + PG+
Sbjct: 816 ARPASTLNVAGP-----FKGPQAAVASQNYTPKPTVSTPTVNAVQPGAVGPSN--ELPGM 868
Query: 492 GRGRKNSFGYRKKREEKFT---------SSQTQSPTPPKPPSPSFELGLSSFPPLPGAAG 542
F R+ R EK+ +++ QSPTP P S + + + PP+
Sbjct: 869 SGRGAQLFAKRQSRMEKYVVDSDTVQAHAARAQSPTPSLPASWKYSSNVRAPPPVAYNPI 928
Query: 543 NLKTEDLFENRLSSLIIGPSKERTLSADASVNTLPVVVSREPSVPASCAVSATYERSPSP 602
+ + L + PSK +N L V+ + + AS T++ +
Sbjct: 929 HSPSYPLAALKSQPSAAQPSKMGKKKGKKPLNALDVMKHQPYQLNASL---FTFQPPDAK 985
Query: 603 AHLPDDPKVAEKQRETHSVDRLPSALTATACKSVQ---VNGAATELRKPS-YAEICQRTS 658
LP V P + A + +VQ V PS +AE S
Sbjct: 986 DGLPQKSSVKVNSALAMKQALPPRPVNAASPTNVQASSVYSVPAYTSPPSFFAEASSPVS 1045
Query: 659 KEP-----PSSPLQ------------PQKEQKPNTVGCGKEEKKLAEPAERYREPPALKS 701
P P+SP Q P+ K + V + + L+ P PP + +
Sbjct: 1046 ASPVPVGIPTSPKQESASSSYFVAPRPKFSAKKSGVTIQESGRSLSLPGRSV--PPPIST 1103
Query: 702 TP----------GAPRDQRRPAGGRPSP 719
+P P D A RP+P
Sbjct: 1104 SPWVYQPTYSYSSKPTDGLEKANKRPTP 1131
Score = 30.4 bits (67), Expect = 6.2
Identities = 57/262 (21%), Positives = 94/262 (35%), Gaps = 44/262 (16%)
Query: 451 SPQTRQAGQTRTRIQNPSAYAKREAGPGR----VEPGSLESSPGLGR-GRKNSFGYRKK- 504
+P Q ++ ++Y ++E R V +E S GLG ++N F +
Sbjct: 517 TPSREQDAAQTDGLRTTTSYQRKEEESVRTQSSVSKSYIEVSHGLGHVPQQNGFSGTSET 576
Query: 505 ----------REEKFTSSQTQSPTPPKPPSPSFELGLSSFPPLPGAAGNLKTEDLFENRL 554
R K P P P+ + ++ FP P + D F +
Sbjct: 577 ANIQRMVPMNRTAKPFPGSVNQPATPFSPTRNMTSPIADFPAPPPYSAVTPPPDAFSRGV 636
Query: 555 SSLIIGPS------KERTLSADASVNTLPVVVSREP--SVPA---SCAVSATYERSPSPA 603
SS I GP+ + S A ++ + SR+ SVPA A + P
Sbjct: 637 SSPIAGPAQPPPWPQPAPWSQPAFYDSSERIASRDERISVPAKRTGILQEAKRRSTTKPM 696
Query: 604 HLPDDPKV------------AEKQRETHS-VDRLPS----ALTATACKSVQVNGAATELR 646
+PKV +E +R T + D P +L A AC +Q + A +
Sbjct: 697 FTFKEPKVSPNPELLSLLQNSEGKRGTGAGGDSGPEEDYLSLGAEACNFMQSSSAKQKTP 756
Query: 647 KPSYAEICQRTSKEPPSSPLQP 668
P + ++S P +P+ P
Sbjct: 757 PPVAPKPAVKSSSSQPVTPVSP 778
>gi|153792780 additional sex combs like 2 [Homo sapiens]
Length = 1435
Score = 43.1 bits (100), Expect = 0.001
Identities = 46/176 (26%), Positives = 66/176 (37%), Gaps = 25/176 (14%)
Query: 506 EEKFTSSQTQ---------SPTPPKPPSPSFELGLSSFPPLPGAAGNLKTEDLFENRLSS 556
E K T SQ Q TPP PP+P+ G + P P L E L R ++
Sbjct: 755 ETKTTPSQAQPHSVSGAQLQQTPPVPPTPAVS-GACTSVPSPAHIEKLDNEKLNPTRATA 813
Query: 557 LII------GPSKERTLSADASVNTLPVVVSREPSVPASCAVSATYERSPSPAHLPDDPK 610
+ GPS R A + T P ++S + P CA T E P+ +P
Sbjct: 814 TVASVSHPQGPSSCRQEKAPSP--TGPALIS--GASPVHCAADGTVELKAGPSKNIPNPS 869
Query: 611 VAEKQRETHSVDRLPSALTATACKSVQVNGAATELRKPSYAEICQRTSKEPPSSPL 666
+ K + +P A+T + S+ +L P + PPSS L
Sbjct: 870 ASSKTDAS-----VPVAVTPSPLTSLLTTATLEKLPVPQVSATTAPAGSAPPSSTL 920
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 42.7 bits (99), Expect = 0.001
Identities = 86/374 (22%), Positives = 123/374 (32%), Gaps = 77/374 (20%)
Query: 373 PPLVTPFPNTGFINGFTSPAFKPAASPLTSLRQYPPRSRNPSKSHLRHAIPSAERGPGLL 432
PPL TP P SP+ P+ L S PP PS + P + P L
Sbjct: 335 PPLATPLPLAP-----PSPSAPPSLQTLPSPPATPPSQAPPSMT-----TPPMQAPPSLQ 384
Query: 433 ESPSIFNFTADRLINGVRSPQTRQAGQTRTRIQNPSAYAKREAGPGRVEPGSLESSPGLG 492
P I Q + +PS +A P + SL+++ LG
Sbjct: 385 TIPPI---------------------QVPHSLTSPSL----QAPPSPLALSSLQATTSLG 419
Query: 493 RGR---KNSFGYRKKREEK--FTSSQTQSPTPPKPPSPSFELGLSSFPPLPGAAGNLKTE 547
+SF R+ + TS + TPP P L L + PPL
Sbjct: 420 SPTLQATHSFLTMSPRQTQASLTSPSRPASTPPDSPPLQAPLSLPASPPL---------- 469
Query: 548 DLFENRLSSLIIGPSKERTLSADASVNTLPVVVSREPSVPASCAVSATYERSPSPAHLPD 607
+ LS + S T+ + L + S P P S + E S A P
Sbjct: 470 ---QTSLSPAVSPLSSPLTIH---PLQALSSLASHSPQAPLSSLIMPPLETQSSLA--PP 521
Query: 608 DPKVAEKQRETHSVDRLPSALTATACKSVQVNGAATELRKPSYAEICQRTSKEPPSSPLQ 667
+ T ++ LPS L ++ L P C + P SPL
Sbjct: 522 SLQTPPASLTTPPLENLPS-LAPPPLQTASAPLTTPHLETPPCPAPC---PLQAPPSPLT 577
Query: 668 PQKEQKPNTVGCGKEEKKLAEPAERYREPPALKSTP--GAPRDQRRPAGGRP--SPSAMG 723
+ P+++ A P + PPAL S P G P P P +P +
Sbjct: 578 TPPPETPSSI---------ATPPP--QAPPALASPPLQGLPSPPLSPLATPPPQAPPXLA 626
Query: 724 KRLSREQSTPPKSP 737
+ +PP SP
Sbjct: 627 LPPLQAPPSPPASP 640
Score = 37.4 bits (85), Expect = 0.050
Identities = 91/401 (22%), Positives = 126/401 (31%), Gaps = 58/401 (14%)
Query: 344 PPMYSP-QQQFPLYSLITPQTWSATHSYLDPPLVTPFPNTGFINGFTSPAFKPAASPLTS 402
PP +P Q P L TP + + PP P + + G SP P A+P
Sbjct: 561 PPCPAPCPLQAPPSPLTTPPPETPSSIATPPPQAPPALASPPLQGLPSPPLSPLATPPP- 619
Query: 403 LRQYPPRSRNPSKSHLRHAIPSAERGPGLLESPSIFNFTADRLINGVRSPQTRQAGQT-- 460
Q PP P S P SP N A L+ SP Q
Sbjct: 620 --QAPPXLALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPF 677
Query: 461 ---RTRIQNPSAYAKREAGPGRVEPGSLESSPGLGRGRKNSFGYRKKREEKFTSSQTQSP 517
+ +PSA +A P P L+ P + + S
Sbjct: 678 SPPASPPVSPSATPPSQAPPSLAAP-PLQVPP----------------SPPASPPMSPSA 720
Query: 518 TPPKPPSPSFELGLSSFPPLPGAAGNLKTEDLFENRLSSLIIGPSKERTLSADASVNTLP 577
TPP P PP P A+ + R+ L+ P + S AS+ P
Sbjct: 721 TPPPQAPPPLAAPPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQVPPSPPASLPMSP 780
Query: 578 VVVSREPSVPASCAVSATYERSPSPAHLPDDPKVAEKQRETHSVDRLPSALTATACKSVQ 637
+ P P + A +P LP P Q LP + AT
Sbjct: 781 -LAKPPPQAPPALA-------TPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAP 832
Query: 638 VNGAATELRKPSYAEICQRTSKEPPSSPLQPQKEQKPNTVGCGKEEKKLAEPAERYREPP 697
AA L+ P PP+SP Q ++P T G + ++ P
Sbjct: 833 PVLAAPLLQVP----------PSPPASPTL-QAPRRPPTPG---PDTSVSGPR------L 872
Query: 698 ALKSTPGAPRDQRRPAGGRPSPSAMGKRLSREQSTPPKSPQ 738
L PG P P PS + G L+ S+ +P+
Sbjct: 873 TLALAPGPP----PPPSRSPSSTLSGPDLAGHSSSATSTPE 909
Score = 32.7 bits (73), Expect = 1.2
Identities = 87/367 (23%), Positives = 110/367 (29%), Gaps = 79/367 (21%)
Query: 383 GFINGFTSPAFKPAASPLTSL--RQYPPRSRNPSKSHLRHAIPSAERGPGLLESPSIFNF 440
G I G T P P A P S P SR P+ A P+ PG + SP
Sbjct: 63 GGIGGATIPESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSP----- 117
Query: 441 TADRLINGVRSPQTRQA--GQTRTRIQNPSAYAKREAGPGRVEPGSLESSPGLGRGRKNS 498
G S TR GQ RI A+ G+ S+ G R
Sbjct: 118 -------GRASGTTRPGPLGQKGLRIS-----AEETVARGKATEAPKRSALSAGARR--- 162
Query: 499 FGYRKKREEKFTSSQTQSPTPPKPPSPSF---------ELGLSSFPPLPGAAGNLKTEDL 549
T PT P PSP+ E+GL P P A TE
Sbjct: 163 --------------DTSGPT-PGTPSPAMARRSRAAGTEVGLPR--PAPSARPRPPTE-- 203
Query: 550 FENRLSSLIIGPSKERTLSADASVNTLPVVVSREPSVPASCAVSATYERSPSPAHLPDDP 609
GP K + +++ S R PS A+ S S L
Sbjct: 204 ----------GPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPA 253
Query: 610 KVAEKQRETHSVDRLPSALTATACKSVQVNGAATELRKPSYAEICQRTSKEPPSSPLQPQ 669
+ R T R P+ + K +Q LR P R P PL
Sbjct: 254 RSGPSARGT---PRAPAHPSQPKPKGLQA------LRPPQVTP--PRKDAAPALGPLSSS 302
Query: 670 KEQKPNTVGCGKEEKKLAEPAERYREPPALKSTPGAPRDQRRPAGGRPSPSAMG--KRLS 727
P+ G + + P + P P P P PSPSA + L
Sbjct: 303 PLATPSPSG---TKARPVPPPDNAATPLPATLPPSPPLATPLPL-APPSPSAPPSLQTLP 358
Query: 728 REQSTPP 734
+TPP
Sbjct: 359 SPPATPP 365
Score = 32.3 bits (72), Expect = 1.6
Identities = 62/284 (21%), Positives = 93/284 (32%), Gaps = 37/284 (13%)
Query: 399 PLTSLRQYPPRS--RNPSKSHLRHAI----PSAERGP---GLLESPSI--FNFTADRLIN 447
P S R PP R S H+ P+A R P G L+ P+ + +A L +
Sbjct: 192 PAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSS 251
Query: 448 GVRS-PQTRQAGQTRTRIQNPSAYAKREAGPGRVEPGSLESSPGLGRGRKNSFGYRKKRE 506
RS P R + P + P +V P +++P LG +
Sbjct: 252 PARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSG 311
Query: 507 EKFTS----SQTQSPTPPK-PPSPSFELGLSSFPPLPGAAGNLKTEDLFENRLSSLIIGP 561
K +P P PPSP L PP P A +L+T + P
Sbjct: 312 TKARPVPPPDNAATPLPATLPPSPPLATPLPLAPPSPSAPPSLQT-----------LPSP 360
Query: 562 SKERTLSADASVNTLPVVVSREPSVPASCAVSATYERSPSPAHLPDDPKVAEKQRETHSV 621
A S+ T P + PS+ + + + P P + T S+
Sbjct: 361 PATPPSQAPPSMTTPP--MQAPPSLQTIPPIQVPHSLTSPSLQAPPSPLALSSLQATTSL 418
Query: 622 DRLPSALTATACKSVQVNGAATELRKPSYAEICQRTSKEPPSSP 665
P+ + ++ L PS R + PP SP
Sbjct: 419 GS-PTLQATHSFLTMSPRQTQASLTSPS------RPASTPPDSP 455
>gi|119943102 CREB binding protein isoform b [Homo sapiens]
Length = 2404
Score = 42.7 bits (99), Expect = 0.001
Identities = 78/347 (22%), Positives = 122/347 (35%), Gaps = 32/347 (9%)
Query: 374 PLVTPFPNTGFINGFTSPAFKPAASPLTSLRQYP--PRSRNPSKSHLRHAIPSAERG--P 429
PL P G S F P + L Q P PR+ +P + H++ G P
Sbjct: 669 PLSLPVNRMQVSQGMNS--FNPMSLGNVQLPQAPMGPRAASP----MNHSVQMNSMGSVP 722
Query: 430 GLLESPSIFNFTADRLINGVRSPQTRQAGQTRTRIQN--PSAYAKREAGPGRVEPGSLES 487
G+ SPS + + + + Q++ QN PS+ G G+ P
Sbjct: 723 GMAISPSRMPQPPNMMGAHTNNMMAQAPAQSQFLPQNQFPSSSGAMSVGMGQ-PPAQTGV 781
Query: 488 SPGL--GRGRKNSFGYRKKREEKFTSSQ-TQSPTPPKPPSPSFELGLSSF---------P 535
S G G N + + TQSP P PP S G+ S P
Sbjct: 782 SQGQVPGAALPNPLNMLGPQASQLPCPPVTQSPLHPTPPPASTAAGMPSLQHTTPPGMTP 841
Query: 536 PLPGAAGNLKTEDLFENRLSSLIIG--PSKERTLSADASVNTLPVVVSREPSVPA---SC 590
P P A T + + G PS +T S V+ +P P S
Sbjct: 842 PQPAAPTQPSTPVSSSGQTPTPTPGSVPSATQTQSTPTVQAAAQAQVTPQPQTPVQPPSV 901
Query: 591 AVSATYERSPSPAHLPDDPKVAEKQRETHSVDRLPS-ALTATACKSVQVNGAATELRKPS 649
A + ++ P+P H P Q +R+P+ + A+A + Q G + +
Sbjct: 902 ATPQSSQQQPTPVH-AQPPGTPLSQAAASIDNRVPTPSSVASAETNSQQPGPDVPVLEMK 960
Query: 650 YAEICQRTSKEPPSSPLQPQKEQKPNTVGCGKEEKKLAEPAERYREP 696
+ T +P S +P+ E + + K+ + AE+ EP
Sbjct: 961 TETQAEDTEPDPGESKGEPRSEMMEEDLQGASQVKEETDIAEQKSEP 1007
>gi|119943104 CREB binding protein isoform a [Homo sapiens]
Length = 2442
Score = 42.7 bits (99), Expect = 0.001
Identities = 78/347 (22%), Positives = 122/347 (35%), Gaps = 32/347 (9%)
Query: 374 PLVTPFPNTGFINGFTSPAFKPAASPLTSLRQYP--PRSRNPSKSHLRHAIPSAERG--P 429
PL P G S F P + L Q P PR+ +P + H++ G P
Sbjct: 707 PLSLPVNRMQVSQGMNS--FNPMSLGNVQLPQAPMGPRAASP----MNHSVQMNSMGSVP 760
Query: 430 GLLESPSIFNFTADRLINGVRSPQTRQAGQTRTRIQN--PSAYAKREAGPGRVEPGSLES 487
G+ SPS + + + + Q++ QN PS+ G G+ P
Sbjct: 761 GMAISPSRMPQPPNMMGAHTNNMMAQAPAQSQFLPQNQFPSSSGAMSVGMGQ-PPAQTGV 819
Query: 488 SPGL--GRGRKNSFGYRKKREEKFTSSQ-TQSPTPPKPPSPSFELGLSSF---------P 535
S G G N + + TQSP P PP S G+ S P
Sbjct: 820 SQGQVPGAALPNPLNMLGPQASQLPCPPVTQSPLHPTPPPASTAAGMPSLQHTTPPGMTP 879
Query: 536 PLPGAAGNLKTEDLFENRLSSLIIG--PSKERTLSADASVNTLPVVVSREPSVPA---SC 590
P P A T + + G PS +T S V+ +P P S
Sbjct: 880 PQPAAPTQPSTPVSSSGQTPTPTPGSVPSATQTQSTPTVQAAAQAQVTPQPQTPVQPPSV 939
Query: 591 AVSATYERSPSPAHLPDDPKVAEKQRETHSVDRLPS-ALTATACKSVQVNGAATELRKPS 649
A + ++ P+P H P Q +R+P+ + A+A + Q G + +
Sbjct: 940 ATPQSSQQQPTPVH-AQPPGTPLSQAAASIDNRVPTPSSVASAETNSQQPGPDVPVLEMK 998
Query: 650 YAEICQRTSKEPPSSPLQPQKEQKPNTVGCGKEEKKLAEPAERYREP 696
+ T +P S +P+ E + + K+ + AE+ EP
Sbjct: 999 TETQAEDTEPDPGESKGEPRSEMMEEDLQGASQVKEETDIAEQKSEP 1045
>gi|58530845 zyxin [Homo sapiens]
Length = 572
Score = 42.7 bits (99), Expect = 0.001
Identities = 52/214 (24%), Positives = 84/214 (39%), Gaps = 16/214 (7%)
Query: 506 EEKFTSSQTQSPTPPKPPSPSFELG--LSSFPPLPGAAGNLKTEDLFENRLSSLIIGPSK 563
EE F + + P PP P E G + PP P + + DL + LSSL+ +K
Sbjct: 101 EESFPPAPLEEEIFPSPPPPPEEEGGPEAPIPPPPQPREKVSSIDLEIDSLSSLLDDMTK 160
Query: 564 ERTLSADASVNTLPVVV-----SREPSVPASCAVSATYE-RSPSPAH-LPDDPKVAEKQR 616
A S +P V S+ + PA+ + +SPS + LP P A+ Q
Sbjct: 161 NDPFKARVSSGYVPPPVATPFSSKSSTKPAAGGTAPLPPWKSPSSSQPLPQVPAPAQSQT 220
Query: 617 ETH---SVDRLPSALTATACKSVQVNGAATELRKPSYAEICQRTSKEPPSSPLQPQKEQK 673
+ H P ++ V+ A T+ R P + P SP+ P+
Sbjct: 221 QFHVQPQPQPKPQVQLHVQSQTQPVSLANTQPRGPP----ASSPAPAPKFSPVTPKFTPV 276
Query: 674 PNTVGCGKEEKKLAEPAERYREPPALKSTPGAPR 707
+ G ++P ++ P AL + G+P+
Sbjct: 277 ASKFSPGAPGGSGSQPNQKLGHPEALSAGTGSPQ 310
>gi|4508047 zyxin [Homo sapiens]
Length = 572
Score = 42.7 bits (99), Expect = 0.001
Identities = 52/214 (24%), Positives = 84/214 (39%), Gaps = 16/214 (7%)
Query: 506 EEKFTSSQTQSPTPPKPPSPSFELG--LSSFPPLPGAAGNLKTEDLFENRLSSLIIGPSK 563
EE F + + P PP P E G + PP P + + DL + LSSL+ +K
Sbjct: 101 EESFPPAPLEEEIFPSPPPPPEEEGGPEAPIPPPPQPREKVSSIDLEIDSLSSLLDDMTK 160
Query: 564 ERTLSADASVNTLPVVV-----SREPSVPASCAVSATYE-RSPSPAH-LPDDPKVAEKQR 616
A S +P V S+ + PA+ + +SPS + LP P A+ Q
Sbjct: 161 NDPFKARVSSGYVPPPVATPFSSKSSTKPAAGGTAPLPPWKSPSSSQPLPQVPAPAQSQT 220
Query: 617 ETH---SVDRLPSALTATACKSVQVNGAATELRKPSYAEICQRTSKEPPSSPLQPQKEQK 673
+ H P ++ V+ A T+ R P + P SP+ P+
Sbjct: 221 QFHVQPQPQPKPQVQLHVQSQTQPVSLANTQPRGPP----ASSPAPAPKFSPVTPKFTPV 276
Query: 674 PNTVGCGKEEKKLAEPAERYREPPALKSTPGAPR 707
+ G ++P ++ P AL + G+P+
Sbjct: 277 ASKFSPGAPGGSGSQPNQKLGHPEALSAGTGSPQ 310
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 42.4 bits (98), Expect = 0.002
Identities = 89/370 (24%), Positives = 125/370 (33%), Gaps = 59/370 (15%)
Query: 399 PLTSLRQYPPRS--RNPSKSHLRHAI----PSAERGP---GLLESPSI--FNFTADRLIN 447
P S R PP R S H+ P+A R P G L+ P+ + +A L +
Sbjct: 183 PAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSS 242
Query: 448 GVRS-PQTRQAGQTRTRIQNPSAYAKREAGPGRVEPGSLESSPGLGRGRKNSFGYRKKRE 506
RS P R + P + P +V P +++P LG
Sbjct: 243 PARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALG-------------- 288
Query: 507 EKFTSSQTQSPTPPKPPSPSFELGLSSFPPLPGAAGNLKTEDLFENRLSSL-IIGPSKER 565
+SS +P+P PPSPS L + P P + T L L + PS
Sbjct: 289 -PLSSSPLATPSPSAPPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPL 347
Query: 566 TLSADASVNTLPVV----VSREPSVPASCAVSATYERSP------------SPAHLPDDP 609
+ A P + + PS PAS +S SP +P P P
Sbjct: 348 SPLATPPPQAPPALALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSP 407
Query: 610 KVAEKQRETHSVDRLPSALTATACKSVQVNGAATELRKPSYAEICQRTSKEPPSSPLQPQ 669
V S PS AT + AA L+ P PP SP
Sbjct: 408 PVQAPFSPPASPPVSPS---ATPPSQAPPSLAAPPLQVP------PSPPASPPMSPSATP 458
Query: 670 KEQKPNTVGCGKEEKKLAEPAERYREPPALKSTP--GAPRDQRRPAGGRPSPSAMGKRLS 727
Q P + +LA+P + PPAL + P P G P + +S
Sbjct: 459 PPQAPPPLAA--PPLQLAKPPP--QAPPALATPPLQALPSPPASFPGQAPFSPSASLPMS 514
Query: 728 REQSTPPKSP 737
+ PP++P
Sbjct: 515 PLATPPPQAP 524
Score = 31.6 bits (70), Expect = 2.8
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 344 PPMYSPQQQFPLYSLITPQTWSATHSYLDPPLVTPF-------PNTGFINGFTSPAFKPA 396
PP P Q SL +P T ATHS+L P ++P P + +P PA
Sbjct: 318 PPATPPSQATT--SLGSP-TLQATHSFLPSPPLSPLATPPPQAPPALALPPLQAPPSPPA 374
Query: 397 ASPLTSLRQYPPRSRNPSKSHLRHA 421
+ PL+ L P++ N HL A
Sbjct: 375 SPPLSPLATPSPQAPNALAVHLLQA 399
>gi|157074225 nuclear pore complex interacting protein-like 3 [Homo
sapiens]
Length = 678
Score = 42.4 bits (98), Expect = 0.002
Identities = 98/413 (23%), Positives = 143/413 (34%), Gaps = 82/413 (19%)
Query: 344 PPMYSPQQQFPLYSLITPQTWSATHSYLDPP--LVTPFPNTGFINGFTSPAFKPAASPLT 401
PP + P ++TP SA + PP L+TP P + N T P P +
Sbjct: 294 PPSADDNLKTPPECVLTPLPPSADDNLKTPPECLLTPLPPSADDNLKTPPECLLTPLPPS 353
Query: 402 SLRQYPPRSRNPSKSH---LRHAIPSAERGPGLLESPSIFNFTADRLINGVRSPQTRQAG 458
+L PP + + K+ L H +P + L++PS +R + + A
Sbjct: 354 ALPSAPPSADDNLKTRAECLLHPLPPS--ADDNLKTPS------ERQLTPLPPSAPPSAD 405
Query: 459 QTRTRIQNPSAYAKREAGPGRVEPGSLESSPGLGRGRKNSFGYRKKREEKFTSSQTQSPT 518
I+ P A+R GP P S + + K S + +P
Sbjct: 406 DN---IKTP---AERLRGP---LPPSADDNL------------------KTPSERQLTPL 438
Query: 519 PPKPPSPSFELGLSSFPPLPGAAGNLKTEDLFENRLSSLIIGPSKERTLSADASVNTLPV 578
PP P P A N+KT RL + PS + L + P+
Sbjct: 439 PPSAP--------------PSADDNIKTP---AERLRGPL-PPSADDNLKTPSERQLTPL 480
Query: 579 VVSREPSVPASCAVSATYERSPSPAHLPDDPKV-AEKQRETHSVDRLPSALTATACKSVQ 637
S PS + A R P P D+ K +E+Q PSA + +
Sbjct: 481 PPSAPPSADDNIKTPAERLRGPLPPSADDNLKTPSERQLTPLPPSAPPSADDNIKTPAER 540
Query: 638 VNG-----AATELRKPSYAEICQRTSKEPPSSP-------LQPQKEQKPNTVGCGKEEKK 685
+ G A L+ P A Q E P P ++P E K VG
Sbjct: 541 LRGPLPPSADDNLKTPPLA--TQEAEAEKPRKPKRQRAAEMEPPPEPKRRRVGD------ 592
Query: 686 LAEPAERYREPPALKSTPGAPRDQRRPAGGRPSPSAMGKRLSREQSTPPKSPQ 738
EP+ + + A P +P +RR G PS KR R P SP+
Sbjct: 593 -VEPSRKPKRRRAADVEPSSPEPKRRRVGD-VEPSRKPKR-RRAADVEPSSPE 642
>gi|149773456 hypothetical protein LOC643314 [Homo sapiens]
Length = 1427
Score = 41.6 bits (96), Expect = 0.003
Identities = 56/238 (23%), Positives = 84/238 (35%), Gaps = 17/238 (7%)
Query: 502 RKKREEKFTSSQTQSPTPPKPPSPSFELGLSSFPPLPGAAGNLKTEDLFENRLSSLIIGP 561
R E+ S PTP +P SP+ + P P AA E S P
Sbjct: 993 RVSTPEEPASPAAAVPTPEEPTSPAAAVPTPEEPTSPAAAVPPP-----EEPTSPAAAVP 1047
Query: 562 SKERTLSADASVNTLPVVVSREPSVPASCAVSATYERSPSPA-HLPDDPKVAEKQRETHS 620
+ E S A+V T EP+ PA+ + SP+ A P++P T
Sbjct: 1048 TPEEPTSPAAAVPT-----PEEPTSPAAAVPTPEEPTSPAAAVPTPEEPTSPAAAVPTPE 1102
Query: 621 VDRLPSALTATACKSVQVNGAATELRKPSYAEICQRTSKEPP-SSPLQPQKEQKPNTVGC 679
P+A T + A +P+ T +EP +P P E+ +
Sbjct: 1103 EPTSPAAAVPTPEEPASPAAAVPTPEEPASPAAAVPTPEEPAFPAPAVPTPEESASAAVA 1162
Query: 680 GKEEKKLAEPAERYREP---PALKSTPGAPRDQRRPAGGRPSPSAMGKRLSREQSTPP 734
++ A PA P + + + PA P+P+AM L E+ T P
Sbjct: 1163 VPTPEESASPAAAVPTPAESASFAAVVATLEEPTSPAASVPTPAAMVATL--EEFTSP 1218
Score = 40.8 bits (94), Expect = 0.005
Identities = 58/238 (24%), Positives = 82/238 (34%), Gaps = 48/238 (20%)
Query: 507 EKFTSSQTQSPTPPKPPSPSFELGLSSFPPLPGAAGNLKTEDLF--------ENRLSSLI 558
E+ TS PTP +P SP+ + P P AA E F E S+ +
Sbjct: 1102 EEPTSPAAAVPTPEEPASPAAAVPTPEEPASPAAAVPTPEEPAFPAPAVPTPEESASAAV 1161
Query: 559 IGPSKERTLSADASVNT--------LPVVVSREP-----SVPASCAVSATYERSPSPAHL 605
P+ E + S A+V T V EP SVP A+ AT E SPA
Sbjct: 1162 AVPTPEESASPAAAVPTPAESASFAAVVATLEEPTSPAASVPTPAAMVATLEEFTSPA-- 1219
Query: 606 PDDPKVAEKQRETHSVDRLPSALTATACKSVQVNGAATELRKPSYAEICQRTSKEPPSSP 665
A T+ + + A + +P+ T +EP SS
Sbjct: 1220 ---------------------ASVPTSEEPASLAAAVSNPEEPTSPAAAVPTLEEPTSSA 1258
Query: 666 ---LQPQKEQKP-NTVGCGKEEKKLAEPAERYREPPALKSTPGAPRDQRRPAGGRPSP 719
L P++ P +V +E A EP + + P PA P+P
Sbjct: 1259 AAVLTPEELSSPAASVPTPEEPASPAAAVSNLEEPASPAAAVPTPEVAAIPAASVPTP 1316
Score = 36.2 bits (82), Expect = 0.11
Identities = 54/241 (22%), Positives = 80/241 (33%), Gaps = 28/241 (11%)
Query: 507 EKFTSSQTQSPTPPKPPSPSFELGLSSFPPLPGAAGNLKTEDLF--------ENRLSSLI 558
E+ TS PTP +P SP+ + P P AA E E S
Sbjct: 1037 EEPTSPAAAVPTPEEPTSPAAAVPTPEEPTSPAAAVPTPEEPTSPAAAVPTPEEPTSPAA 1096
Query: 559 IGPSKERTLSADASVNT--------LPVVVSREPSVPASCAVSATYERSPSPA-HLPDDP 609
P+ E S A+V T V EP+ PA+ + P+PA P++
Sbjct: 1097 AVPTPEEPTSPAAAVPTPEEPASPAAAVPTPEEPASPAAAVPTPEEPAFPAPAVPTPEES 1156
Query: 610 KVAEKQRETHSVDRLPSALTATACKSVQVNGAATELRKPSYAEICQRT------SKEPPS 663
A T P+A T +S L +P+ T + E +
Sbjct: 1157 ASAAVAVPTPEESASPAAAVPTPAESASFAAVVATLEEPTSPAASVPTPAAMVATLEEFT 1216
Query: 664 SPLQ--PQKEQKPNTVGCGKEEKKLAEPA---ERYREPPALKSTPGAPRDQRRPAGGRPS 718
SP P E+ + ++ PA EP + + P + PA P+
Sbjct: 1217 SPAASVPTSEEPASLAAAVSNPEEPTSPAAAVPTLEEPTSSAAAVLTPEELSSPAASVPT 1276
Query: 719 P 719
P
Sbjct: 1277 P 1277
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.128 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,417,844
Number of Sequences: 37866
Number of extensions: 1970216
Number of successful extensions: 10389
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 410
Number of HSP's that attempted gapping in prelim test: 9312
Number of HSP's gapped (non-prelim): 1377
length of query: 738
length of database: 18,247,518
effective HSP length: 110
effective length of query: 628
effective length of database: 14,082,258
effective search space: 8843658024
effective search space used: 8843658024
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.