Guide to the Human Genome
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Name: LARP4B Sequence: fasta or formatted (738aa) NCBI GI: 57634536
Description:

La ribonucleoprotein domain family, member 4B

Referenced in:

RNA-binding Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         64           2
 C cysteine            0.9          7           1
 D aspartate           4.5         33           2
 E glutamate           7.5         55           2
 F phenylalanine       3.1         23           1
 G glycine             5.6         41           2
 H histidine           1.5         11           2
 I isoleucine          3.3         24           2
 K lysine              5.6         41           2
 L leucine             7.6         56           2
 M methionine          0.9          7           1
 N asparagine          4.1         30           1
 P proline            11.0         81           2
 Q glutamine           5.6         41           3
 R arginine            6.0         44           2
 S serine             10.6         78           2
 T threonine           5.8         43           2
 V valine              5.0         37           3
 W tryptophan          0.5          4           1
 Y tyrosine            2.4         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   La ribonucleoprotein domain family, member 4B 
LARP4                 0.271   c-Mpl binding protein isoform a 
LARP4                 0.271   c-Mpl binding protein isoform b 
LARP4                 0.156   c-Mpl binding protein isoform c 
LARP1                 0.021   la related protein isoform 2 
LARP1                 0.021   la related protein isoform 1 
LARP1B                0.019   La ribonucleoprotein domain family member 2 isoform ...
LARP1B                0.019   La ribonucleoprotein domain family member 2 isoform ...
LARP1B                0.019   La ribonucleoprotein domain family member 2 isoform ...
USP31                 0.016   ubiquitin specific peptidase 31 
LARP7                 0.016   La ribonucleoprotein domain family, member 7 
LARP7                 0.016   La ribonucleoprotein domain family, member 7 
ZC3H18                0.015   zinc finger CCCH-type containing 18 
NACA                  0.015   nascent polypeptide-associated complex alpha subuni...
RBM15                 0.013   RNA binding motif protein 15 
SRRM2                 0.013   splicing coactivator subunit SRm300 
PRG4                  0.012   proteoglycan 4 isoform D 
PRG4                  0.012   proteoglycan 4 isoform C 
PRG4                  0.012   proteoglycan 4 isoform B 
PRG4                  0.012   proteoglycan 4 isoform A 
SYNPO2                0.012   synaptopodin 2 isoform a 
ASXL2                 0.012   additional sex combs like 2 
FLJ22184              0.012   PREDICTED: hypothetical protein FLJ22184 
CREBBP                0.012   CREB binding protein isoform b 
CREBBP                0.012   CREB binding protein isoform a 
ZYX                   0.012   zyxin 
ZYX                   0.012   zyxin 
FLJ22184              0.012   PREDICTED: hypothetical protein LOC80164 
NPIPL3                0.012   nuclear pore complex interacting protein-like 3 [Ho...
KIAA0754              0.012   hypothetical protein LOC643314 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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