Guide to the Human Genome
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Name: ZYX Sequence: fasta or formatted (572aa) NCBI GI: 4508047
Description:

zyxin

Referenced in:

LIM Domain Proteins

Other entries for this name:
alt mRNA [572aa] zyxin
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         51           2
 C cysteine            3.7         21           1
 D aspartate           3.7         21           2
 E glutamate           5.9         34           3
 F phenylalanine       3.7         21           1
 G glycine             6.5         37           2
 H histidine           2.6         15           1
 I isoleucine          2.1         12           1
 K lysine              4.5         26           2
 L leucine             5.6         32           2
 M methionine          1.4          8           1
 N asparagine          2.1         12           1
 P proline            18.2        104           6
 Q glutamine           8.0         46           2
 R arginine            4.0         23           1
 S serine              7.2         41           3
 T threonine           4.2         24           1
 V valine              5.8         33           2
 W tryptophan          0.2          1           1
 Y tyrosine            1.7         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zyxin 
ZYX                   1.000   zyxin 
LPP                   0.279   LIM domain containing preferred translocation partner...
TRIP6                 0.225   thyroid receptor-interacting protein 6 
FBLIM1                0.166   filamin-binding LIM protein-1 isoform a 
LIMD1                 0.159   LIM domains containing 1 
FBLIM1                0.157   filamin-binding LIM protein-1 isoform c 
WTIP                  0.149   Wilms tumor 1 interacting protein 
JUB                   0.147   ajuba isoform 1 
FBLIM1                0.099   filamin-binding LIM protein-1 isoform b 
JUB                   0.097   ajuba isoform 2 
TGFB1I1               0.081   transforming growth factor beta 1 induced transcrip...
TGFB1I1               0.081   transforming growth factor beta 1 induced transcript...
LDB3                  0.068   LIM domain binding 3 isoform 1 
LIMS1                 0.065   LIM and senescent cell antigen-like domains 1 
PXN                   0.062   paxillin isoform 1 
LDB3                  0.062   LIM domain binding 3 isoform 2 
FHL3                  0.061   four and a half LIM domains 3 
PXN                   0.060   paxillin isoform 3 
PXN                   0.060   paxillin isoform 2 
ABLIM1                0.060   actin-binding LIM protein 1 isoform c 
ABLIM1                0.060   actin-binding LIM protein 1 isoform b 
ABLIM1                0.060   actin-binding LIM protein 1 isoform a 
LIMS2                 0.059   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.059   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.059   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.059   LIM and senescent cell antigen-like domains 2 isofor...
RAPH1                 0.059   Ras association and pleckstrin homology domains 1 is...
LPXN                  0.058   leupaxin isoform 1 
LPXN                  0.058   leupaxin isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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