Guide to the Human Genome
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Name: NUDC Sequence: fasta or formatted (331aa) NCBI GI: 5729953
Description:

nuclear distribution gene C homolog

Referenced in:

Dynein and Dynactin

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         18           2
 C cysteine            0.3          1           1
 D aspartate           6.9         23           1
 E glutamate          13.3         44           3
 F phenylalanine       3.6         12           2
 G glycine             6.0         20           2
 H histidine           2.1          7           2
 I isoleucine          3.6         12           2
 K lysine             10.3         34           2
 L leucine             8.8         29           2
 M methionine          3.6         12           2
 N asparagine          4.2         14           1
 P proline             3.0         10           1
 Q glutamine           6.3         21           2
 R arginine            6.0         20           2
 S serine              5.7         19           2
 T threonine           4.2         14           1
 V valine              4.2         14           2
 W tryptophan          1.2          4           2
 Y tyrosine            0.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nuclear distribution gene C homolog 
NUDCD3                0.173   NudC domain containing 3 
NUDCD1                0.038   NudC domain containing 1 isoform 2 
NUDCD1                0.038   NudC domain containing 1 isoform 1 
KIF21A                0.033   kinesin family member 21A 
CEP290                0.031   centrosomal protein 290kDa 
TCHH                  0.030   trichohyalin 
NUDCD2                0.030   NudC domain containing 2 
FAM9A                 0.030   family with sequence similarity 9, member A 
ZC3H18                0.028   zinc finger CCCH-type containing 18 
RDX                   0.028   radixin 
PHF3                  0.027   PHD finger protein 3 
CALR                  0.025   calreticulin precursor 
LOC100294088          0.025   PREDICTED: hypothetical protein, partial 
CCDC88B               0.024   coiled-coil domain containing 88 
LOC100289089          0.024   PREDICTED: hypothetical protein XP_002343359 
LOC728792             0.024   PREDICTED: hypothetical protein 
MAP4K4                0.024   mitogen-activated protein kinase kinase kinase kinas...
CCDC34                0.024   coiled-coil domain containing 34 isoform 1 
EIF3A                 0.022   eukaryotic translation initiation factor 3, subunit 1...
LOC100133599          0.022   PREDICTED: hypothetical protein 
LOC100286959          0.022   PREDICTED: hypothetical protein XP_002343921 
CALD1                 0.022   caldesmon 1 isoform 1 
SFRS12                0.022   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.022   splicing factor, arginine/serine-rich 12 isoform b [...
YTHDC1                0.022   splicing factor YT521-B isoform 2 
BAT2D1                0.022   HBxAg transactivated protein 2 
YTHDC1                0.022   splicing factor YT521-B isoform 1 
DNMT1                 0.022   DNA (cytosine-5-)-methyltransferase 1 isoform a [Ho...
DNMT1                 0.022   DNA (cytosine-5-)-methyltransferase 1 isoform b [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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