Guide to the Human Genome
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Name: NUDCD1 Sequence: fasta or formatted (583aa) NCBI GI: 189571677
Description:

NudC domain containing 1 isoform 1

Referenced in:

Dynein and Dynactin

Other entries for this name:
alt prot [554aa] NudC domain containing 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         32           2
 C cysteine            2.4         14           1
 D aspartate           6.5         38           2
 E glutamate           8.7         51           2
 F phenylalanine       3.8         22           2
 G glycine             4.5         26           1
 H histidine           2.6         15           1
 I isoleucine          6.5         38           3
 K lysine              6.0         35           2
 L leucine            11.1         65           3
 M methionine          2.2         13           1
 N asparagine          4.8         28           1
 P proline             4.1         24           2
 Q glutamine           4.1         24           2
 R arginine            4.3         25           2
 S serine              7.2         42           3
 T threonine           5.1         30           2
 V valine              5.1         30           2
 W tryptophan          1.5          9           1
 Y tyrosine            3.8         22           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   NudC domain containing 1 isoform 1 
NUDCD1                0.932   NudC domain containing 1 isoform 2 
NUDC                  0.021   nuclear distribution gene C homolog 
NUDCD2                0.016   NudC domain containing 2 
SUGT1                 0.010   suppressor of G2 allele of SKP1 isoform b 
SUGT1                 0.010   suppressor of G2 allele of SKP1 isoform a 
NUDCD3                0.010   NudC domain containing 3 
USP19                 0.007   ubiquitin thioesterase 19 
CCDC73                0.006   sarcoma antigen NY-SAR-79 
LOC642574             0.006   PREDICTED: IQ motif and ankyrin repeat domain-conta...
LOC642574             0.005   PREDICTED: IQ motif and ankyrin repeat domain-conta...
MYCBP2                0.005   MYC binding protein 2 
CMYA5                 0.005   cardiomyopathy associated 5 
SDF4                  0.004   stromal cell derived factor 4 isoform 1 precursor [Ho...
SYNE2                 0.004   spectrin repeat containing, nuclear envelope 2 isof...
SYNE2                 0.004   spectrin repeat containing, nuclear envelope 2 isof...
SYNE2                 0.004   spectrin repeat containing, nuclear envelope 2 isofo...
SYNE2                 0.004   spectrin repeat containing, nuclear envelope 2 isofo...
RP5-1022P6.2          0.004   hypothetical protein LOC56261 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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