Guide to the Human Genome
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Name: DNMT1 Sequence: fasta or formatted (1632aa) NCBI GI: 195927037
Description:

DNA (cytosine-5-)-methyltransferase 1 isoform a

Referenced in:

DNA Methylation

Other entries for this name:
alt prot [1616aa] DNA (cytosine-5-)-methyltransferase 1 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7        109           3
 C cysteine            2.5         41           1
 D aspartate           6.4        104           3
 E glutamate           8.9        145           3
 F phenylalanine       3.6         58           2
 G glycine             6.2        101           2
 H histidine           1.9         31           2
 I isoleucine          3.9         63           2
 K lysine              8.4        137           4
 L leucine             7.5        122           2
 M methionine          1.9         31           1
 N asparagine          3.7         61           2
 P proline             6.8        111           3
 Q glutamine           3.9         63           2
 R arginine            7.4        120           3
 S serine              6.8        111           3
 T threonine           4.7         77           3
 V valine              5.1         83           3
 W tryptophan          0.9         15           2
 Y tyrosine            3.0         49           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   DNA (cytosine-5-)-methyltransferase 1 isoform a [Ho... 
DNMT1                 0.987   DNA (cytosine-5-)-methyltransferase 1 isoform b [Homo...
NEFH                  0.015   neurofilament, heavy polypeptide 200kDa 
LOC100286959          0.014   PREDICTED: hypothetical protein XP_002343921 
PRPF38B               0.014   PRP38 pre-mRNA processing factor 38 (yeast) domain ...
SFRS12                0.014   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.014   splicing factor, arginine/serine-rich 12 isoform b [...
LOC100133599          0.014   PREDICTED: hypothetical protein 
NOLC1                 0.014   nucleolar and coiled-body phosphoprotein 1 
LOC100294088          0.013   PREDICTED: hypothetical protein, partial 
LOC100131202          0.013   PREDICTED: hypothetical protein 
LOC100133599          0.013   PREDICTED: hypothetical protein 
CALD1                 0.013   caldesmon 1 isoform 1 
TCHH                  0.013   trichohyalin 
SFRS4                 0.013   splicing factor, arginine/serine-rich 4 
SRRM2                 0.012   splicing coactivator subunit SRm300 
RBM25                 0.012   RNA binding motif protein 25 
NEFM                  0.012   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.012   neurofilament, medium polypeptide 150kDa isoform 2 ...
CHAF1A                0.012   chromatin assembly factor 1, subunit A (p150) 
ZC3H13                0.012   zinc finger CCCH-type containing 13 
MAP1B                 0.012   microtubule-associated protein 1B 
SFRS11                0.012   splicing factor, arginine/serine-rich 11 
PPIG                  0.011   peptidylprolyl isomerase G 
MYST3                 0.011   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.011   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.011   MYST histone acetyltransferase (monocytic leukemia)...
BAT2D1                0.011   HBxAg transactivated protein 2 
RGAG4                 0.011   retrotransposon gag domain containing 4 
NCL                   0.011   nucleolin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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