Guide to the Human Genome
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Name: PHF3 Sequence: fasta or formatted (2039aa) NCBI GI: 7662018
Description:

PHD finger protein 3

Referenced in:

PHD Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         92           2
 C cysteine            1.9         39           2
 D aspartate           6.0        123           2
 E glutamate           9.6        195           3
 F phenylalanine       2.8         58           2
 G glycine             4.3         88           2
 H histidine           3.1         64           2
 I isoleucine          4.0         81           2
 K lysine              9.6        196           4
 L leucine             6.8        139           3
 M methionine          2.0         40           2
 N asparagine          5.1        105           2
 P proline             6.8        138           3
 Q glutamine           5.1        104           3
 R arginine            5.2        106           3
 S serine             10.1        206           3
 T threonine           5.4        110           2
 V valine              6.0        123           3
 W tryptophan          0.5         10           1
 Y tyrosine            1.1         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PHD finger protein 3 
DIDO1                 0.051   death inducer-obliterator 1 isoform c 
DIDO1                 0.043   death inducer-obliterator 1 isoform b 
SPOCD1                0.041   SPOC domain containing 1 
ZC3H13                0.014   zinc finger CCCH-type containing 13 
RBM25                 0.014   RNA binding motif protein 25 
LOC100286959          0.012   PREDICTED: hypothetical protein XP_002343921 
LOC100289899          0.012   PREDICTED: hypothetical protein XP_002347041 
TCEA1                 0.012   transcription elongation factor A 1 isoform 1 
TCEA1                 0.012   transcription elongation factor A 1 isoform 2 
LOC100134067          0.012   PREDICTED: hypothetical protein 
DIDO1                 0.012   death inducer-obliterator 1 isoform a 
DIDO1                 0.012   death inducer-obliterator 1 isoform a 
FIP1L1                0.011   FIP1 like 1 isoform 3 
FIP1L1                0.011   FIP1 like 1 isoform 1 
TCEA3                 0.011   transcription elongation factor A (SII), 3 
LOC100131202          0.011   PREDICTED: hypothetical protein 
SFRS12                0.011   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.011   splicing factor, arginine/serine-rich 12 isoform b [...
FIP1L1                0.010   FIP1 like 1 isoform 2 
LOC100288837          0.010   PREDICTED: hypothetical protein XP_002343931, parti...
LOC100131202          0.010   PREDICTED: hypothetical protein 
RNASEN                0.010   ribonuclease III, nuclear isoform 2 
EIF3A                 0.010   eukaryotic translation initiation factor 3, subunit 1...
LOC100133599          0.009   PREDICTED: hypothetical protein 
CROP                  0.009   cisplatin resistance-associated overexpressed protei...
CROP                  0.009   cisplatin resistance-associated overexpressed protei...
LOC100133599          0.009   PREDICTED: hypothetical protein 
TCEA2                 0.009   transcription elongation factor A protein 2 isoform ...
TCEA2                 0.009   transcription elongation factor A protein 2 isoform a...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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