Guide to the Human Genome
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Name: RDX Sequence: fasta or formatted (583aa) NCBI GI: 4506467
Description:

radixin

Referenced in:

Cytoskeleton

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         49           2
 C cysteine            0.3          2           1
 D aspartate           4.5         26           2
 E glutamate          14.6         85           3
 F phenylalanine       3.3         19           2
 G glycine             2.7         16           1
 H histidine           2.1         12           1
 I isoleucine          4.8         28           1
 K lysine             11.5         67           4
 L leucine             8.6         50           2
 M methionine          2.4         14           2
 N asparagine          4.5         26           2
 P proline             4.3         25           8
 Q glutamine           7.0         41           2
 R arginine            6.2         36           3
 S serine              2.4         14           2
 T threonine           4.5         26           2
 V valine              4.5         26           2
 W tryptophan          1.2          7           1
 Y tyrosine            2.4         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   radixin 
MSN                   0.814   moesin 
EZR                   0.791   ezrin 
EZR                   0.791   ezrin 
NF2                   0.426   neurofibromin 2 isoform 1 
NF2                   0.420   neurofibromin 2 isoform 2 
NF2                   0.420   neurofibromin 2 isoform 2 
NF2                   0.420   neurofibromin 2 isoform 2 
NF2                   0.364   neurofibromin 2 isoform 5 
NF2                   0.356   neurofibromin 2 isoform 6 
NF2                   0.317   neurofibromin 2 isoform 7 
NF2                   0.317   neurofibromin 2 isoform 7 
NF2                   0.124   neurofibromin 2 isoform 8 
FRMD4B                0.115   FERM domain containing 4B 
FRMD4A                0.110   FERM domain containing 4A 
PTPN3                 0.106   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.106   protein tyrosine phosphatase, non-receptor type 3 i...
EPB41L1               0.104   erythrocyte membrane protein band 4.1-like 1 isoform...
EPB41L1               0.103   erythrocyte membrane protein band 4.1-like 1 isoform...
PTPN4                 0.101   protein tyrosine phosphatase, non-receptor type 4 [Ho...
FARP2                 0.101   FERM, RhoGEF and pleckstrin domain protein 2 
EPB41                 0.099   erythrocyte membrane protein band 4.1 (elliptocytosi...
EPB41L3               0.099   erythrocyte membrane protein band 4.1-like 3 
EPB41                 0.099   erythrocyte membrane protein band 4.1 (elliptocytosis...
FARP1                 0.098   FERM, RhoGEF, and pleckstrin domain protein 1 isoform...
PTPN13                0.097   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.097   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.097   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.097   protein tyrosine phosphatase, non-receptor type 13 is...
EPB41L4A              0.094   erythrocyte protein band 4.1-like 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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