Guide to the Human Genome
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Name: LOC100289089 Sequence: fasta or formatted (142aa) NCBI GI: 239745093
Description:

PREDICTED: hypothetical protein XP_002343359

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2          6           1
 C cysteine            0.0          0           0
 D aspartate           0.7          1           1
 E glutamate          30.3         43          21
 F phenylalanine       2.1          3           1
 G glycine             3.5          5           1
 H histidine           2.1          3           1
 I isoleucine          1.4          2           1
 K lysine              7.7         11           1
 L leucine             4.9          7           2
 M methionine          1.4          2           1
 N asparagine          2.1          3           1
 P proline             4.2          6           2
 Q glutamine           0.7          1           1
 R arginine           14.1         20           2
 S serine             11.3         16           2
 T threonine           6.3          9           1
 V valine              1.4          2           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343359 
LOC100294088          0.213   PREDICTED: hypothetical protein, partial 
KIAA0182              0.181   genetic suppressor element 1 isoform 2 
KIAA0182              0.181   genetic suppressor element 1 isoform 1 
INCENP                0.177   inner centromere protein antigens 135/155kDa isofor...
INCENP                0.177   inner centromere protein antigens 135/155kDa isofor...
MYT1                  0.173   myelin transcription factor 1 
LOC100133599          0.169   PREDICTED: hypothetical protein 
PELP1                 0.165   proline, glutamic acid and leucine rich protein 1 [...
ATRX                  0.154   transcriptional regulator ATRX isoform 2 
ATRX                  0.154   transcriptional regulator ATRX isoform 1 
TTBK1                 0.150   tau tubulin kinase 1 
CLSPN                 0.150   claspin 
LOC100286959          0.146   PREDICTED: hypothetical protein XP_002343921 
ZEB1                  0.146   zinc finger E-box binding homeobox 1 isoform a [Hom...
ZEB1                  0.146   zinc finger E-box binding homeobox 1 isoform b [Hom...
ZFHX3                 0.142   AT-binding transcription factor 1 
YTHDC1                0.142   splicing factor YT521-B isoform 2 
YTHDC1                0.142   splicing factor YT521-B isoform 1 
LOC100133599          0.142   PREDICTED: hypothetical protein 
LOC728792             0.142   PREDICTED: hypothetical protein 
SFRS12                0.138   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.138   splicing factor, arginine/serine-rich 12 isoform b [...
MAP4K4                0.138   mitogen-activated protein kinase kinase kinase kinas...
MAP4K4                0.138   mitogen-activated protein kinase kinase kinase kinas...
MAP4K4                0.138   mitogen-activated protein kinase kinase kinase kinas...
ZC3H13                0.138   zinc finger CCCH-type containing 13 
RBM25                 0.138   RNA binding motif protein 25 
CCDC108               0.138   coiled-coil domain containing 108 isoform 1 
WDR87                 0.134   NYD-SP11 protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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