Guide to the Human Genome
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Name: LOC728792 Sequence: fasta or formatted (185aa) NCBI GI: 169210053
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         13           2
 C cysteine            1.1          2           1
 D aspartate           2.7          5           1
 E glutamate          26.5         49           6
 F phenylalanine       0.5          1           1
 G glycine             5.4         10           1
 H histidine           1.1          2           1
 I isoleucine          2.2          4           1
 K lysine              8.6         16           2
 L leucine             8.1         15           2
 M methionine          1.6          3           1
 N asparagine          1.6          3           1
 P proline             3.8          7           3
 Q glutamine           4.9          9           2
 R arginine            5.4         10           1
 S serine              5.4         10           1
 T threonine           4.3          8           1
 V valine              7.0         13           1
 W tryptophan          2.2          4           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
MYT1                  0.167   myelin transcription factor 1 
PELP1                 0.137   proline, glutamic acid and leucine rich protein 1 [...
WDR87                 0.137   NYD-SP11 protein 
CDC2L2                0.120   cell division cycle 2-like 2 isoform 4 
CDC2L2                0.120   cell division cycle 2-like 2 isoform 1 
RYR1                  0.120   skeletal muscle ryanodine receptor isoform 2 
RYR1                  0.120   skeletal muscle ryanodine receptor isoform 1 
CDC2L1                0.120   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.120   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.120   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.120   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.120   cell division cycle 2-like 1 (PITSLRE proteins) isof...
YTHDC1                0.120   splicing factor YT521-B isoform 2 
YTHDC1                0.120   splicing factor YT521-B isoform 1 
RANGAP1               0.117   Ran GTPase activating protein 1 
TTBK1                 0.117   tau tubulin kinase 1 
CDC2L1                0.117   cell division cycle 2-like 1 (PITSLRE proteins) isof...
ZEB1                  0.114   zinc finger E-box binding homeobox 1 isoform a [Hom...
ZEB1                  0.114   zinc finger E-box binding homeobox 1 isoform b [Hom...
FAM9A                 0.114   family with sequence similarity 9, member A 
C12orf12              0.111   hypothetical protein LOC196477 
CENPB                 0.111   centromere protein B 
KIAA1529              0.108   hypothetical protein LOC57653 
MYST4                 0.108   MYST histone acetyltransferase (monocytic leukemia)...
MYT1L                 0.108   myelin transcription factor 1-like 
DCAF8L2               0.105   DDB1 and CUL4 associated factor 8-like 2 
CLSPN                 0.105   claspin 
EIF5B                 0.105   eukaryotic translation initiation factor 5B 
LOC100289089          0.105   PREDICTED: hypothetical protein XP_002343359 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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