Guide to the Human Genome
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Name: NUDCD2 Sequence: fasta or formatted (157aa) NCBI GI: 21687129
Description:

NudC domain containing 2

Referenced in:

Dynein and Dynactin

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7          9           2
 C cysteine            1.9          3           1
 D aspartate           5.7          9           1
 E glutamate           8.9         14           2
 F phenylalanine       4.5          7           1
 G glycine             8.9         14           2
 H histidine           0.6          1           1
 I isoleucine          3.8          6           1
 K lysine              5.7          9           1
 L leucine             7.6         12           2
 M methionine          1.9          3           1
 N asparagine          2.5          4           1
 P proline             5.1          8           2
 Q glutamine           6.4         10           1
 R arginine            5.7          9           1
 S serine              6.4         10           1
 T threonine           7.0         11           1
 V valine              6.4         10           2
 W tryptophan          3.2          5           1
 Y tyrosine            1.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   NudC domain containing 2 
NUDCD1                0.063   NudC domain containing 1 isoform 2 
NUDCD1                0.063   NudC domain containing 1 isoform 1 
NUDC                  0.063   nuclear distribution gene C homolog 
NUDCD3                0.040   NudC domain containing 3 
F5                    0.010   coagulation factor V precursor 
RTN1                  0.010   reticulon 1 isoform A 
SUMF2                 0.010   sulfatase modifying factor 2 isoform g 
SUMF2                 0.010   sulfatase modifying factor 2 isoform e precursor [H...
SUMF2                 0.010   sulfatase modifying factor 2 isoform b precursor [H...
SUMF2                 0.010   sulfatase modifying factor 2 isoform c precursor [H...
NEK8                  0.007   NIMA-related kinase 8 
TYW1                  0.007   radical S-adenosyl methionine and flavodoxin domains...
SNX11                 0.007   sorting nexin 11 
SNX11                 0.007   sorting nexin 11 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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