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Search of human proteins with 134288863
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|134288863 hypothetical protein LOC285093 [Homo sapiens]
(572 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|134288863 hypothetical protein LOC285093 [Homo sapiens] 1211 0.0
gi|13899263 transmembrane protein 7 [Homo sapiens] 92 2e-18
gi|54607029 28kD interferon responsive protein [Homo sapiens] 85 2e-16
gi|114687645 receptor transporting protein 1 [Homo sapiens] 81 3e-15
gi|51972198 receptor transporting protein 2 [Homo sapiens] 75 2e-13
gi|239757810 PREDICTED: similar to protein phosphatase 1, regula... 36 0.084
gi|58761532 protein phosphatase 1, regulatory (inhibitor) subuni... 36 0.084
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 35 0.19
gi|239755778 PREDICTED: mucin 19, oligomeric [Homo sapiens] 34 0.32
gi|239750280 PREDICTED: mucin 19, oligomeric [Homo sapiens] 34 0.32
gi|239744589 PREDICTED: mucin 19 [Homo sapiens] 34 0.32
gi|14249534 hypothetical protein LOC84915 [Homo sapiens] 34 0.41
gi|188536004 zinc finger protein 469 [Homo sapiens] 33 0.71
gi|134142824 forkhead box D2 [Homo sapiens] 33 0.92
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 32 1.2
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 32 1.2
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 32 1.2
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 32 1.2
gi|149944451 zinc finger, SWIM domain containing 5 [Homo sapiens] 32 1.2
gi|56606114 trichohyalin-like 1 [Homo sapiens] 32 1.2
gi|169211520 PREDICTED: hypothetical protein [Homo sapiens] 31 2.7
gi|7662176 ProSAPiP1 protein [Homo sapiens] 31 2.7
gi|5454106 TBP-related factor 10 [Homo sapiens] 31 3.5
gi|239745596 PREDICTED: polycystin 1-like 3 [Homo sapiens] 30 4.6
gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ... 30 4.6
gi|31559825 polycystin 1-like 3 [Homo sapiens] 30 4.6
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 30 4.6
gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo s... 30 4.6
gi|112821681 G protein-regulated inducer of neurite outgrowth 1 ... 30 4.6
gi|169204353 PREDICTED: hypothetical protein [Homo sapiens] 30 6.0
>gi|134288863 hypothetical protein LOC285093 [Homo sapiens]
Length = 572
Score = 1211 bits (3132), Expect = 0.0
Identities = 572/572 (100%), Positives = 572/572 (100%)
Query: 1 MDRAGADMWASTFTLAMAERKPQDVWVLLPEHSLVPGCLDGGGVQYLLVGLSRLQCGHCP 60
MDRAGADMWASTFTLAMAERKPQDVWVLLPEHSLVPGCLDGGGVQYLLVGLSRLQCGHCP
Sbjct: 1 MDRAGADMWASTFTLAMAERKPQDVWVLLPEHSLVPGCLDGGGVQYLLVGLSRLQCGHCP 60
Query: 61 GTWDSAHVHVLFHLWWDRASHRGLVKMRIWGQRCRLCPAPGDCQVRPPGEQPFLSRLVLH 120
GTWDSAHVHVLFHLWWDRASHRGLVKMRIWGQRCRLCPAPGDCQVRPPGEQPFLSRLVLH
Sbjct: 61 GTWDSAHVHVLFHLWWDRASHRGLVKMRIWGQRCRLCPAPGDCQVRPPGEQPFLSRLVLH 120
Query: 121 ILQDCYGDGPGPARHPREAYEGCCEACELGVCFLQKAPDPAWSANATKGNFPATAWGGTG 180
ILQDCYGDGPGPARHPREAYEGCCEACELGVCFLQKAPDPAWSANATKGNFPATAWGGTG
Sbjct: 121 ILQDCYGDGPGPARHPREAYEGCCEACELGVCFLQKAPDPAWSANATKGNFPATAWGGTG 180
Query: 181 TVSRGKPLSTPGDDLGKGGVVIAIPFSLVGTSNDQVPIAEGPAPPAGASLPVTGSCEALV 240
TVSRGKPLSTPGDDLGKGGVVIAIPFSLVGTSNDQVPIAEGPAPPAGASLPVTGSCEALV
Sbjct: 181 TVSRGKPLSTPGDDLGKGGVVIAIPFSLVGTSNDQVPIAEGPAPPAGASLPVTGSCEALV 240
Query: 241 IGQGSIFLSGDSVAMPGGKGFPVAIGDPLFHGPGLLGSSIQTFELKGFLFKGRGSLCSPV 300
IGQGSIFLSGDSVAMPGGKGFPVAIGDPLFHGPGLLGSSIQTFELKGFLFKGRGSLCSPV
Sbjct: 241 IGQGSIFLSGDSVAMPGGKGFPVAIGDPLFHGPGLLGSSIQTFELKGFLFKGRGSLCSPV 300
Query: 301 GVAQGWGPISLNNGLVPVGKHTPTVFYCVGLSASGEGSLTFPSSLTSIFTNTLSEPTDGP 360
GVAQGWGPISLNNGLVPVGKHTPTVFYCVGLSASGEGSLTFPSSLTSIFTNTLSEPTDGP
Sbjct: 301 GVAQGWGPISLNNGLVPVGKHTPTVFYCVGLSASGEGSLTFPSSLTSIFTNTLSEPTDGP 360
Query: 361 VATKEASITFPFIFTDVKDAVAEVAEGNGKEGGGQGLVPVGHDALPETNAGGLPSQVKGS 420
VATKEASITFPFIFTDVKDAVAEVAEGNGKEGGGQGLVPVGHDALPETNAGGLPSQVKGS
Sbjct: 361 VATKEASITFPFIFTDVKDAVAEVAEGNGKEGGGQGLVPVGHDALPETNAGGLPSQVKGS 420
Query: 421 LALPFPADVQGKDAFTDITEGKEKEGGLVTAGHDAPLEANAEGPITVSEGCITIPFAVFD 480
LALPFPADVQGKDAFTDITEGKEKEGGLVTAGHDAPLEANAEGPITVSEGCITIPFAVFD
Sbjct: 421 LALPFPADVQGKDAFTDITEGKEKEGGLVTAGHDAPLEANAEGPITVSEGCITIPFAVFD 480
Query: 481 VIKRKGGGHVAYGPQGNGCFSQGYYQKRQLRSRFHKARCGCRREEDERPGRACRRPHAEP 540
VIKRKGGGHVAYGPQGNGCFSQGYYQKRQLRSRFHKARCGCRREEDERPGRACRRPHAEP
Sbjct: 481 VIKRKGGGHVAYGPQGNGCFSQGYYQKRQLRSRFHKARCGCRREEDERPGRACRRPHAEP 540
Query: 541 YEDFWIWVSMTVCVFWLMCMCRLNPGIYPQQV 572
YEDFWIWVSMTVCVFWLMCMCRLNPGIYPQQV
Sbjct: 541 YEDFWIWVSMTVCVFWLMCMCRLNPGIYPQQV 572
>gi|13899263 transmembrane protein 7 [Homo sapiens]
Length = 232
Score = 91.7 bits (226), Expect = 2e-18
Identities = 48/122 (39%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Query: 7 DMWASTFTLAMAERKPQDVWVLLPEHSLVPGCLDGGGVQYLLVGLSRLQCGHCPGTWDSA 66
++W F M E KP W L P+ L+P L G +QY +R QC C W SA
Sbjct: 6 EVWKQMFQELMREVKPWHRWTLRPDKGLLPNVLKPGWMQYQQWTFARFQCSSCSRNWASA 65
Query: 67 HVHVLFHLWWDRASHRGLVKMRIWGQRCRLCPAP--GDCQVRPPGEQPFLSRLVLHILQD 124
V VLFH+ W RG VKMR++ QRC+ CP P D + L LV IL+
Sbjct: 66 QVLVLFHMNWSEEKSRGQVKMRVFTQRCKKCPQPLFEDPEFTQENISRILKNLVFRILKK 125
Query: 125 CY 126
CY
Sbjct: 126 CY 127
>gi|54607029 28kD interferon responsive protein [Homo sapiens]
Length = 246
Score = 84.7 bits (208), Expect = 2e-16
Identities = 54/158 (34%), Positives = 73/158 (46%), Gaps = 17/158 (10%)
Query: 9 WASTFTLAMAERKPQDVWVLLPEHSLVPGCLDGGGVQYLLVGLSRLQCGHCPGTWDSAHV 68
W TF + E KP+ W L + +L CL G QY +C C +W SA V
Sbjct: 8 WEQTFQELIQEAKPRATWTLKLDGNLQLDCLAQGWKQYQQRAFGWFRCSSCQRSWASAQV 67
Query: 69 HVLFHLWWDRASHRGLVKMRIWGQRCRLCPAPGDCQVRPP-----GEQPFLSRLVLHILQ 123
+L H +W+ + +G V+MR++GQRC+ C Q P LS LV HIL+
Sbjct: 68 QILCHTYWEHWTSQGQVRMRLFGQRCQKC---SWSQYEMPEFSSDSTMRILSNLVQHILK 124
Query: 124 DCYGDG----PGPARHPREAYEGC-----CEACELGVC 152
YG+G P + EG CEAC LG+C
Sbjct: 125 KYYGNGTRKSPEMPVILEVSLEGSHDTANCEACTLGIC 162
>gi|114687645 receptor transporting protein 1 [Homo sapiens]
Length = 263
Score = 80.9 bits (198), Expect = 3e-15
Identities = 62/212 (29%), Positives = 89/212 (41%), Gaps = 22/212 (10%)
Query: 7 DMWASTFTLAMAERKPQDVWVLLPEHSLVPGCLDGGGVQYLLVGLS-RLQCGHCPGTWDS 65
D W F M E KP D W L+ + +L L G QYL + S R C C TW S
Sbjct: 44 DEWKKVFYEKMEEAKPADSWDLIIDPNLKHNVLSPGWKQYLELHASGRFHCSWCWHTWQS 103
Query: 66 AHVHVLFHLWWDRASHRGLVKMRIWGQRCRLCPAP--GDCQVRPPGEQPFLSRLVLHILQ 123
+V +LFH++ DRA G V+MR++ Q C C + + + + L+ + +
Sbjct: 104 PYVVILFHMFLDRAQRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDNLITSLRE 163
Query: 124 DCYGDGPG------PARHPREAYEG-CCEACELGVCFLQKAPDPAWSANATKGNFPATAW 176
CYG+ G +R + G CEAC+ G+ W + AT
Sbjct: 164 QCYGERGGQYRIHVASRQDNRRHRGEFCEACQEGIVH--------WKPSEKLLEEEAT-- 213
Query: 177 GGTGTVSRGKPLSTPGDDLGKGGVVIAIPFSL 208
T T SR + D G G +IP+ L
Sbjct: 214 --TYTFSRAPSPTKSQDQTGSGWNFCSIPWCL 243
>gi|51972198 receptor transporting protein 2 [Homo sapiens]
Length = 225
Score = 75.1 bits (183), Expect = 2e-13
Identities = 50/155 (32%), Positives = 69/155 (44%), Gaps = 14/155 (9%)
Query: 9 WASTFTLAMAERKPQDVWVLLPEHSLVPGCLDGGGVQYLLVGLS-RLQCGHCPGTWDSAH 67
W F M KP D W L+ + +L P L G QYL S R C C TW SAH
Sbjct: 10 WKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSWCWHTWQSAH 69
Query: 68 VHVLFHLWWDRASHRGLVKMRIWGQRCRLCPAP--GDCQVRPPGEQPFLSRLVLHILQDC 125
V +LFH++ DRA G V+MR++ Q C C + + + + L+ + + C
Sbjct: 70 VVILFHMFLDRARRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDNLITSLREQC 129
Query: 126 YGDGPG---------PARHPREAYEGCCEACELGV 151
Y + G P P A CEAC+ G+
Sbjct: 130 YEEDGGQYRIHVASRPDSGPHRA--EFCEACQEGI 162
>gi|239757810 PREDICTED: similar to protein phosphatase 1,
regulatory (inhibitor) subunit 3F [Homo sapiens]
Length = 724
Score = 36.2 bits (82), Expect = 0.084
Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 26/126 (20%)
Query: 100 PGDCQVRPPGEQPFLSRLVLHILQDCYGDGPGPARHPREAYEGCCEACELGVCFLQKAPD 159
PG V PG +P + R ++ +L + A H R +++G C+ ++ ++P
Sbjct: 149 PGGAGVWVPGGRPPVLRGLVRVLNRSFEK----AVHVRASHDGWASFCDHPARYVPRSPP 204
Query: 160 PAWSANATKGNFPATAWGGTGTVSRGKPLSTPGDDLGKGGVVIAIPFSLVGTSND----Q 215
W G G G P+ PG LG G + P G D Q
Sbjct: 205 ----------------WAGAGGTGAGDPILDPGLGLGPGQASASSPDD--GGRTDRFAFQ 246
Query: 216 VPIAEG 221
+P AEG
Sbjct: 247 LPFAEG 252
>gi|58761532 protein phosphatase 1, regulatory (inhibitor) subunit
3F [Homo sapiens]
Length = 799
Score = 36.2 bits (82), Expect = 0.084
Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 26/126 (20%)
Query: 100 PGDCQVRPPGEQPFLSRLVLHILQDCYGDGPGPARHPREAYEGCCEACELGVCFLQKAPD 159
PG V PG +P + R ++ +L + A H R +++G C+ ++ ++P
Sbjct: 149 PGGAGVWVPGGRPPVLRGLVRVLNRSFEK----AVHVRASHDGWASFCDHPARYVPRSPP 204
Query: 160 PAWSANATKGNFPATAWGGTGTVSRGKPLSTPGDDLGKGGVVIAIPFSLVGTSND----Q 215
W G G G P+ PG LG G + P G D Q
Sbjct: 205 ----------------WAGAGGTGAGDPILDPGLGLGPGQASASSPDD--GGRTDRFAFQ 246
Query: 216 VPIAEG 221
+P AEG
Sbjct: 247 LPFAEG 252
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 35.0 bits (79), Expect = 0.19
Identities = 51/188 (27%), Positives = 68/188 (36%), Gaps = 38/188 (20%)
Query: 103 CQVRPPGEQPFLSRLVLHILQDCYGDGPGPARHPR--EAYEGCCEACELGVCFLQKAPD- 159
C V PG Q ++ GP R P+ + EG C ACE G P
Sbjct: 460 CSVGNPGPQGIKGKV-----------GPPGGRGPKGEKGNEGLC-ACEPGPMGPPGPPGL 507
Query: 160 ------------PAWSANATKGN-FPATAWGGTGTVSRGKPLSTPGDDLGKGGVVIAIPF 206
P W TKG+ P A G G + PG+ KG +V++
Sbjct: 508 PGRQGSKGDLGLPGWLG--TKGDPGPPGAEGPPGLPGKHGASGPPGNKGAKGDMVVS--- 562
Query: 207 SLVGTSNDQVPIAEGPAPPAGASLPVTGSCEALVIGQGSIFLSGDSV-AMPGGKGFPVAI 265
+ G ++ P PP P + + +G GD A PGGKGFP +
Sbjct: 563 RVKGHKGERGP----DGPPGFPGQPGSHGRDGHAGEKGDPGPPGDHEDATPGGKGFPGPL 618
Query: 266 GDPLFHGP 273
G P GP
Sbjct: 619 GPPGKAGP 626
>gi|239755778 PREDICTED: mucin 19, oligomeric [Homo sapiens]
Length = 598
Score = 34.3 bits (77), Expect = 0.32
Identities = 48/210 (22%), Positives = 74/210 (35%), Gaps = 36/210 (17%)
Query: 163 SANATKGNFPATAWGGTGTVSRGKPLSTPGDDLGKGGVVIAIPFSLVGTSNDQVP--IAE 220
+ GN + + T S PG ++G G+V + G+SN + +
Sbjct: 123 TTGVVSGNTISPSSFNTEATSGTSERPNPGSEIGTTGIVSGTTVA-PGSSNTEATTSLGN 181
Query: 221 GPAPPAGASLPVTGSCEALVIGQGSI---FLSGDSVAMPGGKGFPVAIGDPLFHGPGLLG 277
G AG+ + TG I GS + V + G G I + + G
Sbjct: 182 GGTTEAGSKIVTTGITTGTTIVPGSFNTKATTSTDVGVATGVGMATGITNIIS------G 235
Query: 278 SSIQTFELKGFLFKGRGSLCSPVGVAQGWGPISLNNGLVPVGKHTPTVFYCVGLSASGEG 337
S T G+ G G+ P G G P S G+++S EG
Sbjct: 236 RSQPTGSKTGYTVTGSGTTALPGGFRTGNTPGS------------------TGVTSSQEG 277
Query: 338 SLTFPSSLTSIFTNTLSEPTDGPVATKEAS 367
+ S +T I ++S P +KEAS
Sbjct: 278 TTVVSSGITGIPETSISGP------SKEAS 301
>gi|239750280 PREDICTED: mucin 19, oligomeric [Homo sapiens]
Length = 598
Score = 34.3 bits (77), Expect = 0.32
Identities = 48/210 (22%), Positives = 74/210 (35%), Gaps = 36/210 (17%)
Query: 163 SANATKGNFPATAWGGTGTVSRGKPLSTPGDDLGKGGVVIAIPFSLVGTSNDQVP--IAE 220
+ GN + + T S PG ++G G+V + G+SN + +
Sbjct: 123 TTGVVSGNTISPSSFNTEATSGTSERPNPGSEIGTTGIVSGTTVA-PGSSNTEATTSLGN 181
Query: 221 GPAPPAGASLPVTGSCEALVIGQGSI---FLSGDSVAMPGGKGFPVAIGDPLFHGPGLLG 277
G AG+ + TG I GS + V + G G I + + G
Sbjct: 182 GGTTEAGSKIVTTGITTGTTIVPGSFNTKATTSTDVGVATGVGMATGITNIIS------G 235
Query: 278 SSIQTFELKGFLFKGRGSLCSPVGVAQGWGPISLNNGLVPVGKHTPTVFYCVGLSASGEG 337
S T G+ G G+ P G G P S G+++S EG
Sbjct: 236 RSQPTGSKTGYTVTGSGTTALPGGFRTGNTPGS------------------TGVTSSQEG 277
Query: 338 SLTFPSSLTSIFTNTLSEPTDGPVATKEAS 367
+ S +T I ++S P +KEAS
Sbjct: 278 TTVVSSGITGIPETSISGP------SKEAS 301
>gi|239744589 PREDICTED: mucin 19 [Homo sapiens]
Length = 598
Score = 34.3 bits (77), Expect = 0.32
Identities = 48/210 (22%), Positives = 74/210 (35%), Gaps = 36/210 (17%)
Query: 163 SANATKGNFPATAWGGTGTVSRGKPLSTPGDDLGKGGVVIAIPFSLVGTSNDQVP--IAE 220
+ GN + + T S PG ++G G+V + G+SN + +
Sbjct: 123 TTGVVSGNTISPSSFNTEATSGTSERPNPGSEIGTTGIVSGTTVA-PGSSNTEATTSLGN 181
Query: 221 GPAPPAGASLPVTGSCEALVIGQGSI---FLSGDSVAMPGGKGFPVAIGDPLFHGPGLLG 277
G AG+ + TG I GS + V + G G I + + G
Sbjct: 182 GGTTEAGSKIVTTGITTGTTIVPGSFNTKATTSTDVGVATGVGMATGITNIIS------G 235
Query: 278 SSIQTFELKGFLFKGRGSLCSPVGVAQGWGPISLNNGLVPVGKHTPTVFYCVGLSASGEG 337
S T G+ G G+ P G G P S G+++S EG
Sbjct: 236 RSQPTGSKTGYTVTGSGTTALPGGFRTGNTPGS------------------TGVTSSQEG 277
Query: 338 SLTFPSSLTSIFTNTLSEPTDGPVATKEAS 367
+ S +T I ++S P +KEAS
Sbjct: 278 TTVVSSGITGIPETSISGP------SKEAS 301
>gi|14249534 hypothetical protein LOC84915 [Homo sapiens]
Length = 452
Score = 33.9 bits (76), Expect = 0.41
Identities = 43/184 (23%), Positives = 62/184 (33%), Gaps = 37/184 (20%)
Query: 98 PAPGDCQVRPPGEQPFLSRLVLHILQDCYGDGPGPARHPREAYEGCCEACELGVCFLQKA 157
P PG PP P + L+ + Q C G P C
Sbjct: 183 PLPGRGLPLPPSNLPSIHSLLYQLNQQCQAPGAAPP-----------------ACQGMAI 225
Query: 158 PDPAWSANATKGNFPATAWGGTGTVSRGKPLSTPGDDLGKGGVV------IAIPFSLVGT 211
P P+ + + +FP+ A+ + + G P G +LG+G A P +
Sbjct: 226 PHPSPAKHGPVPSFPSMAY----SAAAGLPDCRKGTELGQGATQALTLAGAAKPAGYADS 281
Query: 212 SNDQVPIAEGPAPPAGASLPVTGSCEALVIGQGSIFLSGDSVAMPGGKGFPVAIGDPLFH 271
D + + P PP + L GS S A GG+ + A G PL
Sbjct: 282 GLDYLLWPQKPPPPPP---------QPLRAYSGSTVASKSPEAC-GGRAYERASGSPLNC 331
Query: 272 GPGL 275
G GL
Sbjct: 332 GVGL 335
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 33.1 bits (74), Expect = 0.71
Identities = 44/144 (30%), Positives = 60/144 (41%), Gaps = 30/144 (20%)
Query: 342 PSSLTSI-FTN---TLSEPTDGPVATKEASITFPFIFTDVKDAVAEV---AEGNGKEGGG 394
PSS TS +T+ T P GP ++ S P + + + + A+ A N G
Sbjct: 188 PSSFTSTNYTSPSATPRPPAPGPPQSRGTSPLQPGSYPEYQASGADSWPPAAENSFPGAN 247
Query: 395 QGLVPVGHDALPE-TNAGGLPSQVK---------GSLALPFPADVQGKDAFTDITEGKEK 444
G+ P + +P+ + GG P V G+ PFPADV G AFT+
Sbjct: 248 FGVPPAEPEPIPKGSRPGGSPRGVSFQFPFPALHGASTKPFPADVAG-HAFTN------- 299
Query: 445 EGGLVTAGHDA----PLEANAEGP 464
G LV A H P EA GP
Sbjct: 300 -GPLVFAFHQPQGAWPEEAVGTGP 322
>gi|134142824 forkhead box D2 [Homo sapiens]
Length = 495
Score = 32.7 bits (73), Expect = 0.92
Identities = 42/177 (23%), Positives = 57/177 (32%), Gaps = 11/177 (6%)
Query: 94 CRLCPAPGDCQVRPPGEQP---FLSRLVLHILQDCYGDGPGPARHPREAYEGCCEACELG 150
C+L PG PPG F G GPGP A+ G C
Sbjct: 306 CQLSVPPGRAAAPPPGPPTASVFAGAGSAPAPAPASGSGPGPGPAGLPAFLGAELGCAKA 365
Query: 151 VCFLQKAPDPAWSANAT-----KGNFPATAWGGTGTVSRG---KPLSTPGDDLGKGGVVI 202
+P A +A + A GG G G +P + +G GG
Sbjct: 366 FYAASLSPPAAGTAAGLPTALLRQGLKTDAGGGAGGGGAGAGQRPSFSIDHIMGHGGGGA 425
Query: 203 AIPFSLVGTSNDQVPIAEGPAPPAGASLPVTGSCEALVIGQGSIFLSGDSVAMPGGK 259
A P + G+ A GP A +T A V G + GD++ G +
Sbjct: 426 APPGAGEGSPGPPFAAAAGPGGQAQVLAMLTAPALAPVAGHIRLSHPGDALLSSGSR 482
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 32.3 bits (72), Expect = 1.2
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 10/71 (14%)
Query: 222 PAPPAGASLPVTGSCEALVIGQGSIFLSGD-----SVAMPGGKGFPVAIGDPLFHGPGLL 276
P PP LP + + QG+ L G + +PG GFP A GD PGL
Sbjct: 483 PGPPGLPGLPGLHGVKGIPGRQGAAGLKGSPGSPGNTGLPGFPGFPGAQGD-----PGLK 537
Query: 277 GSSIQTFELKG 287
G +T + +G
Sbjct: 538 GEKGETLQPEG 548
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 32.3 bits (72), Expect = 1.2
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 10/71 (14%)
Query: 222 PAPPAGASLPVTGSCEALVIGQGSIFLSGD-----SVAMPGGKGFPVAIGDPLFHGPGLL 276
P PP LP + + QG+ L G + +PG GFP A GD PGL
Sbjct: 483 PGPPGLPGLPGLHGVKGIPGRQGAAGLKGSPGSPGNTGLPGFPGFPGAQGD-----PGLK 537
Query: 277 GSSIQTFELKG 287
G +T + +G
Sbjct: 538 GEKGETLQPEG 548
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 32.3 bits (72), Expect = 1.2
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 10/71 (14%)
Query: 222 PAPPAGASLPVTGSCEALVIGQGSIFLSGD-----SVAMPGGKGFPVAIGDPLFHGPGLL 276
P PP LP + + QG+ L G + +PG GFP A GD PGL
Sbjct: 483 PGPPGLPGLPGLHGVKGIPGRQGAAGLKGSPGSPGNTGLPGFPGFPGAQGD-----PGLK 537
Query: 277 GSSIQTFELKG 287
G +T + +G
Sbjct: 538 GEKGETLQPEG 548
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 32.3 bits (72), Expect = 1.2
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 10/71 (14%)
Query: 222 PAPPAGASLPVTGSCEALVIGQGSIFLSGD-----SVAMPGGKGFPVAIGDPLFHGPGLL 276
P PP LP + + QG+ L G + +PG GFP A GD PGL
Sbjct: 483 PGPPGLPGLPGLHGVKGIPGRQGAAGLKGSPGSPGNTGLPGFPGFPGAQGD-----PGLK 537
Query: 277 GSSIQTFELKG 287
G +T + +G
Sbjct: 538 GEKGETLQPEG 548
>gi|149944451 zinc finger, SWIM domain containing 5 [Homo sapiens]
Length = 1185
Score = 32.3 bits (72), Expect = 1.2
Identities = 17/50 (34%), Positives = 22/50 (44%)
Query: 217 PIAEGPAPPAGASLPVTGSCEALVIGQGSIFLSGDSVAMPGGKGFPVAIG 266
P EGP PP GA+ P + + G +G A GG+G P G
Sbjct: 134 PAEEGPQPPPGAAAPAGSAPGGVAAGASPGLGAGAGAAGCGGEGLPFRRG 183
>gi|56606114 trichohyalin-like 1 [Homo sapiens]
Length = 904
Score = 32.3 bits (72), Expect = 1.2
Identities = 37/133 (27%), Positives = 50/133 (37%), Gaps = 30/133 (22%)
Query: 334 SGEGSLTFPSSLTSIFTNTLSEPTDGPVATKEASITFPFIFTDVKDAVAEVAEGNGKEGG 393
S EGS P+SL S N+ SE + PV +G+ + G
Sbjct: 542 SDEGSSETPNSLASEEGNSSSETGELPV------------------------QGDSQSQG 577
Query: 394 GQ--GLVPVGHDALPETNAGGLPSQVKGSLALPFPA----DVQGKDAFTDITEGKEKEGG 447
Q V GH+ P+T G P + +L PA DVQ + G+ K G
Sbjct: 578 DQHGESVQGGHNNNPDTQRQGTPGEKNRALEAVVPAVRGEDVQLTEDQEQPARGEHKNQG 637
Query: 448 LVTAGHDAPLEAN 460
T G A +E N
Sbjct: 638 PGTKGPGAAVEPN 650
>gi|169211520 PREDICTED: hypothetical protein [Homo sapiens]
Length = 312
Score = 31.2 bits (69), Expect = 2.7
Identities = 38/130 (29%), Positives = 49/130 (37%), Gaps = 24/130 (18%)
Query: 191 PGDDLGKGGVVIAIPFSLVGTSNDQVPIAEGPAPPAGASLPVTG--SCEALVIGQG---- 244
PG G+GG A+P GT VP+ P PAG S P G SC G
Sbjct: 121 PGTAAGRGGCCEALPAE--GTCRRLVPLH--PRSPAGESGPGRGGGSCGPAGTAAGGKLR 176
Query: 245 ---------SIFLSGDSVAMPGGKGFPVA-----IGDPLFHGPGLLGSSIQTFELKGFLF 290
S+ L S ++ FPV + L GP ++TF LF
Sbjct: 177 ARLLRLPDCSLALGKASYSVWSPTHFPVPPLLGRLPCVLLEGPARCQRRVETFAAGAGLF 236
Query: 291 KGRGSLCSPV 300
G G+ SP+
Sbjct: 237 VGPGASPSPL 246
>gi|7662176 ProSAPiP1 protein [Homo sapiens]
Length = 673
Score = 31.2 bits (69), Expect = 2.7
Identities = 70/285 (24%), Positives = 101/285 (35%), Gaps = 64/285 (22%)
Query: 153 FLQKAPDPAWSANATKGNFPATAWGGTGTVSRGKPLSTPGDDLGKGGVVIAIPFSLVGTS 212
F K+ ++G+FP G+G SR +P P +D G + + L G+
Sbjct: 50 FAMKSVGTRTGGGGSQGSFPGPRGSGSGA-SRERPGRYPSEDKGLANSLY-LNGELRGSD 107
Query: 213 NDQVPIAEGPAPPAGASLPVTGSCEALVIGQGSIFLSGDSVAMPGGKGFPVAIGDPLFHG 272
+ V C +V GS SG S + G P +P H
Sbjct: 108 HTDV-------------------CGNVV---GS---SGGSSSSGGSDKAPPQYREPS-HP 141
Query: 273 PGLLGSSIQTFELKGFL-------------FKGRGSLCSPV--GVAQG-WGPISLNNGLV 316
P LL +S + + L F +LC P G +G GP L GL
Sbjct: 142 PKLLATSGKLDQCSEPLVRPSAFKPVVPKNFHSMQNLCPPQTNGTPEGRQGPGGLKGGLD 201
Query: 317 PVGKHTPTVFYCVGLSASGEGSLTFPSSLTSIFTNTLSEPTDGPVATKEASITFPFIFTD 376
TP GLS SG SLT + +S ++ L+ P++ + I
Sbjct: 202 KSRTMTPAGGSGSGLSDSGRNSLTSLPTYSSSYSQHLA-----PLSASTSHIN------- 249
Query: 377 VKDAVAEVAEGN-GKEGGGQGLVPVGHDALPETNAGGLPSQVKGS 420
+ A G+ G GGG G +G T+ G S GS
Sbjct: 250 -RIGTASYGSGSGGSSGGGSGYQDLG------TSDSGRASSKSGS 287
>gi|5454106 TBP-related factor 10 [Homo sapiens]
Length = 218
Score = 30.8 bits (68), Expect = 3.5
Identities = 42/180 (23%), Positives = 65/180 (36%), Gaps = 22/180 (12%)
Query: 219 AEGPAPP--AGASLPVTGSCEALVIGQGSIFLSGDSVAMPGGKGFPVAIGDPLFHGPGLL 276
A GPAPP A A+LP + + E G+ GG G A G GP L
Sbjct: 20 APGPAPPVSAPAALPSSTAAENKASPAGT----------AGGPGAGAAAGGT---GP-LA 65
Query: 277 GSSIQTFELKGFLFKGRGSLCSPVGVAQGWG---PISLNNGLVPVGKHTPTVFYCVGLSA 333
+ + E +G G P G P + N + PV TP V + + L
Sbjct: 66 ARAGEPAERRGAAPVSAGGAAPPEGAISNGVYVLPSAANGDVKPVVSSTPLVDFLMQLE- 124
Query: 334 SGEGSLTFPSSLTSIFTNTLSEPTDGPVATKEASITFPFIFTDVKDAVAEVAEGNGKEGG 393
+ + T P ++T + N P + S+ +D+ + + + G G
Sbjct: 125 --DYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCKMKGTASG 182
>gi|239745596 PREDICTED: polycystin 1-like 3 [Homo sapiens]
Length = 1731
Score = 30.4 bits (67), Expect = 4.6
Identities = 35/137 (25%), Positives = 54/137 (39%), Gaps = 9/137 (6%)
Query: 343 SSLTSIFTNTLSEPTDGPVATKEASITFPFIFTDVKDAVAEVAEGNGKEGGGQGLVPVGH 402
SS+TS T+ SEP+ P+ +T P T ++AE +EG P
Sbjct: 211 SSITSQVTSAASEPSSQPLPV-ITQLTMPVSVTHAGQSLAETTSSPKEEGH-----PNTF 264
Query: 403 DALPETNAGGLPSQVKGSLALPFPADVQGKDAFTDITEGKE--KEGGLVTAGHDAPLEAN 460
+ + + QV +A F V G A + E E ++ +T P + N
Sbjct: 265 TSYLQVSLQKASGQVIDEIAGNFSRAVHGLQALNKLQEACEFLQKLTALTPRFSKPAQVN 324
Query: 461 -AEGPITVSEGCITIPF 476
I +SE + IPF
Sbjct: 325 LINSLIYLSEELLRIPF 341
>gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo
sapiens]
Length = 1691
Score = 30.4 bits (67), Expect = 4.6
Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 8/57 (14%)
Query: 221 GPAPPAGASLPVTGSCEALVIGQGSIFLSGDSVAMPGGKGFPVAIGDPLFHGPGLLG 277
GPA P P TG E + +G G+ PG KGFP G P F G G G
Sbjct: 237 GPAGPP----PSTGELEFMGFPKGKKGSKGE----PGPKGFPGISGPPGFPGLGTTG 285
>gi|31559825 polycystin 1-like 3 [Homo sapiens]
Length = 1732
Score = 30.4 bits (67), Expect = 4.6
Identities = 35/137 (25%), Positives = 54/137 (39%), Gaps = 9/137 (6%)
Query: 343 SSLTSIFTNTLSEPTDGPVATKEASITFPFIFTDVKDAVAEVAEGNGKEGGGQGLVPVGH 402
SS+TS T+ SEP+ P+ +T P T ++AE +EG P
Sbjct: 211 SSITSQVTSAASEPSSQPLPV-ITQLTMPVSVTHAGQSLAETTSSPKEEGH-----PNTF 264
Query: 403 DALPETNAGGLPSQVKGSLALPFPADVQGKDAFTDITEGKE--KEGGLVTAGHDAPLEAN 460
+ + + QV +A F V G A + E E ++ +T P + N
Sbjct: 265 TSYLQVSLQKASGQVIDEIAGNFSRAVHGLQALNKLQEACEFLQKLTALTPRFSKPAQVN 324
Query: 461 -AEGPITVSEGCITIPF 476
I +SE + IPF
Sbjct: 325 LINSLIYLSEELLRIPF 341
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 30.4 bits (67), Expect = 4.6
Identities = 32/93 (34%), Positives = 37/93 (39%), Gaps = 4/93 (4%)
Query: 183 SRGKP--LSTPGDDLGKGGVVIAIPFSLVGTSNDQVPIAEGPAPPAGASLPVTGSCEALV 240
S GKP PG D KG + P G P GP PAGA + EA
Sbjct: 384 SDGKPGYPGKPGLDGPKGNPGLPGPKGDPGVGGP--PGLPGPVGPAGAKGMPGHNGEAGP 441
Query: 241 IGQGSIFLSGDSVAMPGGKGFPVAIGDPLFHGP 273
G I + + PG GFP + GDP GP
Sbjct: 442 RGAPGIPGTRGPIGPPGIPGFPGSKGDPGSPGP 474
>gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo
sapiens]
Length = 1690
Score = 30.4 bits (67), Expect = 4.6
Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 8/57 (14%)
Query: 221 GPAPPAGASLPVTGSCEALVIGQGSIFLSGDSVAMPGGKGFPVAIGDPLFHGPGLLG 277
GPA P P TG E + +G G+ PG KGFP G P F G G G
Sbjct: 236 GPAGPP----PSTGELEFMGFPKGKKGSKGE----PGPKGFPGISGPPGFPGLGTTG 284
>gi|112821681 G protein-regulated inducer of neurite outgrowth 1
[Homo sapiens]
Length = 1008
Score = 30.4 bits (67), Expect = 4.6
Identities = 34/117 (29%), Positives = 46/117 (39%), Gaps = 24/117 (20%)
Query: 172 PATAWGGTGTVSRGKPLSTPGDDLGKGGVVIAIPFSLVGTSNDQVPIAEGPAPP--AGAS 229
P+ T +G PLS+ K G+V S P A G A P G
Sbjct: 506 PSAVKAEPATGGKGDPLSSE-----KAGLV---------ASGKAAPTASGKAEPLAVGKE 551
Query: 230 LPVT-GSCEALVIGQGS-------IFLSGDSVAMPGGKGFPVAIGDPLFHGPGLLGS 278
PV+ G +A GQG + G +V +P GK PV++G G +GS
Sbjct: 552 DPVSKGKADAGPSGQGDSVSIGKVVSTPGKTVPVPSGKVDPVSLGKAEAIPEGKVGS 608
Score = 29.6 bits (65), Expect = 7.8
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 9/94 (9%)
Query: 177 GGTGTVSRGKPLSTPGD--DLGKGGVVIAIPFS-LVGTSNDQVPIAEGPAPPAGASLPV- 232
G T VS G PGD LG G A+ G D + + +G + P
Sbjct: 485 GKTNPVSSG-----PGDPRSLGTAGPPSAVKAEPATGGKGDPLSSEKAGLVASGKAAPTA 539
Query: 233 TGSCEALVIGQGSIFLSGDSVAMPGGKGFPVAIG 266
+G E L +G+ G + A P G+G V+IG
Sbjct: 540 SGKAEPLAVGKEDPVSKGKADAGPSGQGDSVSIG 573
>gi|169204353 PREDICTED: hypothetical protein [Homo sapiens]
Length = 214
Score = 30.0 bits (66), Expect = 6.0
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 56 CGHCPGTWDSAHVHVLFHLW-WDRASHRGLVKMRIWGQRCRLCPAPGDCQVRPPGEQPFL 114
C HCPG +H + +W W A + G R C A G C PP + L
Sbjct: 137 CSHCPGGQPGPQLHCAWTVWSW--AVPSSASRACGDGHRRSTCQAQGSCTGLPP-LRGCL 193
Query: 115 SRLV 118
SRLV
Sbjct: 194 SRLV 197
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.140 0.460
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,530,954
Number of Sequences: 37866
Number of extensions: 1662233
Number of successful extensions: 3992
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 3928
Number of HSP's gapped (non-prelim): 79
length of query: 572
length of database: 18,247,518
effective HSP length: 108
effective length of query: 464
effective length of database: 14,157,990
effective search space: 6569307360
effective search space used: 6569307360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.