Guide to the Human Genome
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Name: RTP4 Sequence: fasta or formatted (246aa) NCBI GI: 54607029
Description:

28kD interferon responsive protein

Referenced in:

Olfactory Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         14           1
 C cysteine            4.9         12           1
 D aspartate           2.8          7           1
 E glutamate           5.7         14           1
 F phenylalanine       3.7          9           1
 G glycine             6.9         17           1
 H histidine           2.0          5           1
 I isoleucine          4.1         10           1
 K lysine              6.5         16           2
 L leucine             9.8         24           3
 M methionine          2.4          6           1
 N asparagine          3.3          8           1
 P proline             4.1         10           1
 Q glutamine           8.1         20           2
 R arginine            4.1         10           1
 S serine              9.3         23           2
 T threonine           5.3         13           1
 V valine              4.9         12           2
 W tryptophan          3.7          9           1
 Y tyrosine            2.8          7           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   28kD interferon responsive protein 
RTP3                  0.295   transmembrane protein 7 
RTP2                  0.141   receptor transporting protein 2 
RTP1                  0.135   receptor transporting protein 1 
C2orf85               0.121   hypothetical protein LOC285093 
ZAR1L                 0.020   zygote arrest 1-like 
LAMA3                 0.016   laminin alpha 3 subunit isoform 1 
LAMA3                 0.016   laminin alpha 3 subunit isoform 3 
ZAR1                  0.016   zygote arrest 1 
LAMA5                 0.014   laminin alpha 5 
MTA1                  0.012   metastasis associated protein 
LOC126987             0.012   PREDICTED: similar to hCG2040319 
LOC126987             0.012   PREDICTED: similar to hCG2040319 
LOC126987             0.012   PREDICTED: similar to hCG2040319 
SEZ6L                 0.010   seizure related 6 homolog (mouse)-like precursor [Ho...
HGS                   0.010   hepatocyte growth factor-regulated tyrosine kinase su...
ZCCHC24               0.008   zinc finger, CCHC domain containing 24 
LAMA1                 0.008   laminin, alpha 1 precursor 
LAMB2                 0.006   laminin, beta 2 precursor 
KCNF1                 0.006   potassium voltage-gated channel, subfamily F, member...
SPHKAP                0.006   sphingosine kinase type 1-interacting protein isofo...
SPHKAP                0.006   sphingosine kinase type 1-interacting protein isofo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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