Guide to the Human Genome
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Name: RTP1 Sequence: fasta or formatted (263aa) NCBI GI: 114687645
Description:

receptor transporting protein 1

Referenced in:

Olfactory Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         12           1
 C cysteine            4.2         11           1
 D aspartate           3.8         10           1
 E glutamate           7.6         20           3
 F phenylalanine       4.9         13           1
 G glycine             4.6         12           2
 H histidine           3.4          9           1
 I isoleucine          4.2         11           2
 K lysine              4.6         12           2
 L leucine            10.3         27           3
 M methionine          2.3          6           1
 N asparagine          2.3          6           1
 P proline             4.6         12           1
 Q glutamine           4.2         11           1
 R arginine            7.6         20           2
 S serine              9.1         24           2
 T threonine           5.3         14           2
 V valine              4.9         13           2
 W tryptophan          4.6         12           1
 Y tyrosine            3.0          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   receptor transporting protein 1 
RTP2                  0.671   receptor transporting protein 2 
RTP3                  0.149   transmembrane protein 7 
RTP4                  0.125   28kD interferon responsive protein 
C2orf85               0.104   hypothetical protein LOC285093 
ZAR1L                 0.013   zygote arrest 1-like 
DBNL                  0.013   drebrin-like isoform c 
PSAP                  0.009   prosaposin isoform c preproprotein 
PSAP                  0.009   prosaposin isoform b preproprotein 
PSAP                  0.009   prosaposin isoform a preproprotein 
EFCAB5                0.007   EF-hand calcium binding domain 5 isoform b 
EFCAB5                0.007   EF-hand calcium binding domain 5 isoform a 
ASZ1                  0.006   ankyrin repeat, SAM and basic leucine zipper domain ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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