Guide to the Human Genome
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Name: PKD1L3 Sequence: fasta or formatted (1731aa) NCBI GI: 239745596
Description:

PREDICTED: polycystin 1-like 3

Referenced in:

Arachidonate, Prostaglandins, and Leukotrienes
Kidney
Taste Receptors

Other entries for this name:
alt prot [1731aa] PREDICTED: polycystic kidney disease 1-like 3
alt prot [1732aa] PREDICTED: polycystic kidney disease 1-like 3
alt prot [1732aa] polycystin 1-like 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         90           2
 C cysteine            2.3         40           2
 D aspartate           3.3         57           2
 E glutamate           4.8         83           2
 F phenylalanine       4.9         85           2
 G glycine             4.7         82           2
 H histidine           3.4         59           3
 I isoleucine          5.6         97           2
 K lysine              5.2         90           4
 L leucine            13.2        228           3
 M methionine          1.7         30           2
 N asparagine          4.3         75           3
 P proline             5.0         86           2
 Q glutamine           5.0         86           2
 R arginine            4.3         74           2
 S serine              9.1        158           3
 T threonine           6.4        110           2
 V valine              6.8        117           2
 W tryptophan          2.0         34           2
 X unknown             0.1          1           1
 Y tyrosine            2.8         49           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: polycystin 1-like 3 
PKD1L3                0.999   polycystin 1-like 3 
PKD1L3                0.998   PREDICTED: polycystic kidney disease 1-like 3 [Homo...
PKD1L3                0.996   PREDICTED: polycystic kidney disease 1-like 3 [Homo...
PKD1L2                0.147   polycystin 1-like 2 isoform a 
PKDREJ                0.045   receptor for egg jelly-like protein precursor 
PKD1                  0.044   polycystin 1 isoform 2 precursor 
PKD1                  0.044   polycystin 1 isoform 1 precursor 
PKD1L1                0.028   polycystin-1L1 
PKD2                  0.017   polycystin 2 
LOXHD1                0.016   lipoxygenase homology domains 1 isoform 1 
LOXHD1                0.016   lipoxygenase homology domains 1 isoform 2 
LOXHD1                0.016   lipoxygenase homology domains 1 isoform 3 
PKD2L1                0.014   polycystic kidney disease 2-like 1 
PKD2L2                0.012   polycystic kidney disease 2-like 2 
LOC100293597          0.010   PREDICTED: similar to hCG2036697 
LOC100291435          0.010   PREDICTED: hypothetical protein XP_002347033 
LOC100287651          0.010   PREDICTED: hypothetical protein XP_002342894 
GPR97                 0.006   G protein-coupled receptor 97 
ALOX5                 0.006   arachidonate 5-lipoxygenase 
GPR113                0.006   G-protein coupled receptor 113 isoform 1 
GPR113                0.006   G-protein coupled receptor 113 isoform 2 
GPR113                0.006   G-protein coupled receptor 113 isoform 3 
KCNB2                 0.005   potassium voltage-gated channel, Shab-related subfam...
DENND5A               0.005   RAB6 interacting protein 1 
DENND5B               0.005   DENN/MADD domain containing 5B 
KCNB1                 0.005   potassium voltage-gated channel, Shab-related subfami...
GPR56                 0.005   G protein-coupled receptor 56 isoform b precursor [...
GPR56                 0.005   G protein-coupled receptor 56 isoform c precursor [...
GPR56                 0.005   G protein-coupled receptor 56 isoform b precursor [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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