Guide to the Human Genome
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Name: CARD17 Sequence: fasta or formatted (110aa) NCBI GI: 55925612
Description:

caspase recruitment domain family, member 17

Referenced in:

BCL2 Pathways, Caspases, and Programmed Cell Death

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3          8           1
 C cysteine            3.6          4           1
 D aspartate           4.5          5           1
 E glutamate           9.1         10           2
 F phenylalanine       0.9          1           1
 G glycine             8.2          9           1
 H histidine           1.8          2           1
 I isoleucine          8.2          9           1
 K lysine              6.4          7           1
 L leucine            11.8         13           2
 M methionine          1.8          2           1
 N asparagine          2.7          3           1
 P proline             2.7          3           1
 Q glutamine           4.5          5           1
 R arginine            4.5          5           1
 S serine              7.3          8           1
 T threonine           7.3          8           2
 V valine              6.4          7           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.9          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   caspase recruitment domain family, member 17 
CASP1                 0.750   caspase 1 isoform alpha precursor 
CARD16                0.677   caspase-1 dominant-negative inhibitor pseudo-ICE iso...
CASP1                 0.661   caspase 1 isoform beta precursor 
CARD16                0.630   caspase-1 dominant-negative inhibitor pseudo-ICE iso...
CARD18                0.354   ICEBERG caspase-1 inhibitor 
NLRC4                 0.083   caspase recruitment domain protein 12 
CASP1                 0.073   caspase 1 isoform epsilon 
CARD8                 0.073   caspase recruitment domain family, member 8 
CASP4                 0.062   caspase 4 isoform alpha precursor 
CASP1                 0.057   caspase 1 isoform gamma precursor 
CASP1                 0.057   caspase 1 isoform delta 
CASP5                 0.052   caspase 5 isoform b precursor 
NOD2                  0.042   nucleotide-binding oligomerization domain containing...
CASP5                 0.042   caspase 5 isoform f precursor 
CASP5                 0.042   caspase 5 isoform a precursor 
CARD6                 0.036   caspase recruitment domain family, member 6 
RIPK2                 0.031   receptor-interacting serine-threonine kinase 2 
LYST                  0.026   lysosomal trafficking regulator 
DNAH5                 0.021   dynein, axonemal, heavy chain 5 
SH3BP5                0.021   SH3-domain binding protein 5 (BTK-associated) isofo...
SH3BP5                0.021   SH3-domain binding protein 5 (BTK-associated) isofo...
NOD1                  0.016   nucleotide-binding oligomerization domain containing ...
TCEANC                0.010   TFIIS central domain-containing protein 1 
RGPD8                 0.010   PREDICTED: RANBP2-like and GRIP domain containing 8...
AKAP9                 0.010   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.010   A-kinase anchor protein 9 isoform 3 
RGPD5                 0.010   RANBP2-like and GRIP domain containing 5 isoform 1 [...
RGPD6                 0.010   RANBP2-like and GRIP domain containing 6 
CDC25C                0.010   cell division cycle 25C isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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