Guide to the Human Genome
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Name: CARD16 Sequence: fasta or formatted (197aa) NCBI GI: 62953113
Description:

caspase-1 dominant-negative inhibitor pseudo-ICE isoform 1

Referenced in:

BCL2 Pathways, Caspases, and Programmed Cell Death

Other entries for this name:
alt prot [97aa] caspase-1 dominant-negative inhibitor pseudo-ICE isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         11           2
 C cysteine            3.0          6           1
 D aspartate           3.6          7           1
 E glutamate           8.1         16           2
 F phenylalanine       3.0          6           1
 G glycine             5.6         11           1
 H histidine           2.0          4           1
 I isoleucine          7.1         14           2
 K lysine              7.6         15           1
 L leucine            12.7         25           3
 M methionine          3.0          6           1
 N asparagine          3.6          7           1
 P proline             3.6          7           1
 Q glutamine           6.1         12           1
 R arginine            6.1         12           1
 S serine              5.6         11           2
 T threonine           6.1         12           1
 V valine              3.6          7           1
 W tryptophan          2.0          4           1
 Y tyrosine            2.0          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   caspase-1 dominant-negative inhibitor pseudo-ICE iso... 
CASP1                 0.543   caspase 1 isoform beta precursor 
CASP1                 0.508   caspase 1 isoform alpha precursor 
CARD16                0.412   caspase-1 dominant-negative inhibitor pseudo-ICE iso...
CARD17                0.322   caspase recruitment domain family, member 17 
CARD18                0.205   ICEBERG caspase-1 inhibitor 
CASP1                 0.096   caspase 1 isoform gamma precursor 
CASP1                 0.096   caspase 1 isoform delta 
CASP4                 0.053   caspase 4 isoform alpha precursor 
CARD8                 0.043   caspase recruitment domain family, member 8 
CASP1                 0.037   caspase 1 isoform epsilon 
NLRC4                 0.035   caspase recruitment domain protein 12 
BIRC2                 0.032   baculoviral IAP repeat-containing protein 2 
BIRC3                 0.027   baculoviral IAP repeat-containing protein 3 
BIRC3                 0.027   baculoviral IAP repeat-containing protein 3 
CASP5                 0.027   caspase 5 isoform b precursor 
CASP5                 0.024   caspase 5 isoform f precursor 
CASP5                 0.024   caspase 5 isoform a precursor 
DNAH5                 0.019   dynein, axonemal, heavy chain 5 
NOD2                  0.019   nucleotide-binding oligomerization domain containing...
CARD6                 0.016   caspase recruitment domain family, member 6 
IFNAR1                0.013   interferon-alpha receptor 1 precursor 
SF3A2                 0.011   splicing factor 3a, subunit 2 
TMCO5A                0.008   transmembrane and coiled-coil domains 5A 
ZNF830                0.008   coiled-coil domain containing 16 
LOC100130599          0.008   PREDICTED: hypothetical protein 
LOC100130599          0.008   PREDICTED: similar to Keratin-associated protein 10...
METTL6                0.008   methyltransferase like 6 
MAX                   0.005   MAX protein isoform b 
MAX                   0.005   MAX protein isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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