NOD1 31992

Name: NOD1	Sequence: fasta or formatted (953aa)		NCBI GI: 5174617
Description: nucleotide-binding oligomerization domain containing 1		Referenced in: BCL2 Pathways, Caspases, and Programmed Cell Death Pyrin and Associated Functions
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.6 63 3 C cysteine 2.9 28 1 D aspartate 4.4 42 2 E glutamate 6.5 62 2 F phenylalanine 5.6 53 3 G glycine 5.7 54 2 H histidine 2.7 26 2 I isoleucine 3.5 33 2 K lysine 5.0 48 2 L leucine 15.5 148 3 M methionine 1.7 16 1 N asparagine 4.0 38 3 P proline 4.0 38 2 Q glutamine 5.7 54 2 R arginine 5.5 52 2 S serine 6.8 65 2 T threonine 5.1 49 2 V valine 5.5 52 3 W tryptophan 1.0 10 1 Y tyrosine 2.3 22 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 nucleotide-binding oligomerization domain containing ... NOD2 0.224 nucleotide-binding oligomerization domain containing... NLRC3 0.087 NOD3 protein NLRP12 0.075 NLR family, pyrin domain containing 12 isoform 2 [Ho... NLRP3 0.065 NLR family, pyrin domain containing 3 isoform a [Ho... NLRP3 0.065 NLR family, pyrin domain containing 3 isoform a [Hom... NLRP3 0.060 NLR family, pyrin domain containing 3 isoform c [Ho... NLRP3 0.059 NLR family, pyrin domain containing 3 isoform d [Ho... NLRC5 0.057 nucleotide-binding oligomerization domains 27 [Homo... NLRP14 0.056 NLR family, pyrin domain containing 14 NLRP3 0.054 NLR family, pyrin domain containing 3 isoform b [Hom... NLRP7 0.051 NACHT, leucine rich repeat and PYD containing 7 isof... CIITA 0.050 class II transactivator NLRP4 0.047 NLR family, pyrin domain containing 4 NLRP1 0.046 NLR family, pyrin domain containing 1 isoform 2 [Homo... NLRP1 0.046 NLR family, pyrin domain containing 1 isoform 4 [Hom... NLRP1 0.046 NLR family, pyrin domain containing 1 isoform 5 [Hom... NLRP1 0.046 NLR family, pyrin domain containing 1 isoform 3 [Hom... NLRP1 0.046 NLR family, pyrin domain containing 1 isoform 1 [Hom... NLRP7 0.046 NACHT, leucine rich repeat and PYD containing 7 iso... NLRP7 0.046 NACHT, leucine rich repeat and PYD containing 7 isof... NLRX1 0.044 NLR family member X1 isoform 1 NLRX1 0.040 NLR family member X1 isoform 2 NLRP6 0.039 NLR family, pyrin domain containing 6 NLRP5 0.037 NACHT, LRR and PYD containing protein 5 NLRP2 0.034 NLR family, pyrin domain containing 2 LRRC34 0.034 leucine rich repeat containing 34 RNH1 0.034 ribonuclease/angiogenin inhibitor RNH1 0.034 ribonuclease/angiogenin inhibitor RNH1 0.034 ribonuclease/angiogenin inhibitor Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.