Guide to the Human Genome
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Name: RGPD6 Sequence: fasta or formatted (1765aa) NCBI GI: 182765478
Description:

RANBP2-like and GRIP domain containing 6

Referenced in:

Ran and Rag

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6        116           2
 C cysteine            1.3         23           1
 D aspartate           5.4         96           3
 E glutamate           8.9        157           3
 F phenylalanine       3.9         69           1
 G glycine             5.3         94           2
 H histidine           2.0         36           2
 I isoleucine          3.7         65           2
 K lysine              8.3        146           2
 L leucine            10.5        185           3
 M methionine          1.5         26           2
 N asparagine          4.4         77           2
 P proline             4.2         75           2
 Q glutamine           4.3         76           2
 R arginine            4.8         85           2
 S serine              9.6        169           4
 T threonine           5.1         90           3
 V valine              5.9        105           2
 W tryptophan          1.4         24           2
 Y tyrosine            2.9         51           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RANBP2-like and GRIP domain containing 6 
RGPD5                 1.000   RANBP2-like and GRIP domain containing 5 isoform 1 [...
RGPD8                 0.996   PREDICTED: RANBP2-like and GRIP domain containing 8...
RGPD3                 0.950   RANBP2-like and GRIP domain containing 3 
RGPD4                 0.943   RANBP2-like and GRIP domain containing 4 
RGPD1                 0.929   RANBP2-like and GRIP domain containing 1 
RGPD2                 0.533   RANBP2-like and GRIP domain containing 2 
RGPD5                 0.495   RANBP2-like and GRIP domain containing 5 isoform 2 [...
RGPD7                 0.495   RANBP2-like and GRIP domain containing 7 
RANBP2                0.490   RAN binding protein 2 
GCC2                  0.062   GRIP and coiled-coil domain-containing 2 
RGPD8                 0.034   PREDICTED: RANBP2-like and GRIP domain containing 8...
RANBP1                0.034   RAN binding protein 1 
LOC389842             0.032   PREDICTED: similar to RAN binding protein 1 
LOC389842             0.032   PREDICTED: similar to RAN binding protein 1 
LOC389842             0.025   PREDICTED: similar to RAN binding protein 1 
GCC1                  0.008   Golgi coiled-coil protein 1 
RANBP3                0.007   RAN binding protein 3 isoform RANBP3-a 
RANBP3                0.007   RAN binding protein 3 isoform RANBP3-b 
RANBP3                0.007   RAN binding protein 3 isoform RANBP3-d 
ZC3H13                0.007   zinc finger CCCH-type containing 13 
RANBP3L               0.006   RAN binding protein 3-like isoform 1 
RANBP3L               0.006   RAN binding protein 3-like isoform 2 
NUP153                0.005   nucleoporin 153kDa 
FTSJ3                 0.005   FtsJ homolog 3 
SYCP1                 0.004   synaptonemal complex protein 1 
ANKRD62               0.004   PREDICTED: ankyrin repeat domain 62 isoform 1 [Homo...
C15orf42              0.004   leucine-rich repeat kinase 1 
RB1CC1                0.004   Rb1-inducible coiled coil protein 1 isoform 2 [Homo...
RB1CC1                0.004   Rb1-inducible coiled coil protein 1 isoform 1 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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